RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 CCDC144AA2RUR9 1427 aa12.6□□□□□ -0.39
TDP1-202ENST00000393452 ZFYVE16Q7Z3T8 1539 aa12.6□□□□□ -0.39
TDP1-202ENST00000393452 BCORL1Q5H9F3 1711 aa12.6□□□□□ -0.39
TDP1-202ENST00000393452 FANCAO15360 1455 aa12.59□□□□□ -0.39
TDP1-202ENST00000393452 ASXL2Q76L83 1435 aa12.58□□□□□ -0.39
TDP1-202ENST00000393452 ARID4BQ4LE39 1312 aaPredicted RBP12.58□□□□□ -0.39
TDP1-202ENST00000393452 SPAG9O60271 1321 aaKnown RBP12.58□□□□□ -0.4
TDP1-202ENST00000393452 ZNF326Q5BKZ1 582 aaKnown RBP12.58□□□□□ -0.4
TDP1-202ENST00000393452 INO80Q9ULG1 1556 aaPredicted RBP12.58□□□□□ -0.4
TDP1-202ENST00000393452 DCAF11Q8TEB1 546 aa12.57□□□□□ -0.4
TDP1-202ENST00000393452 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.57□□□□□ -0.4
TDP1-202ENST00000393452 DEPDC5O75140 1603 aa12.56□□□□□ -0.4
TDP1-202ENST00000393452 AFAP1Q8N556 730 aa12.56□□□□□ -0.4
TDP1-202ENST00000393452 PRKRIP1Q9H875 184 aaPredicted RBP12.56□□□□□ -0.4
TDP1-202ENST00000393452 TRPM1Q7Z4N2 1603 aa12.56□□□□□ -0.4
TDP1-202ENST00000393452 PRAG1Q86YV5 1406 aa12.56□□□□□ -0.4
TDP1-202ENST00000393452 ATP7AQ04656 1500 aa12.55□□□□□ -0.4
TDP1-202ENST00000393452 A2MP01023 1474 aa12.54□□□□□ -0.4
TDP1-202ENST00000393452 CARD11Q9BXL7 1154 aa12.54□□□□□ -0.4
TDP1-202ENST00000393452 KDM2AQ9Y2K7 1162 aa12.54□□□□□ -0.4
TDP1-202ENST00000393452 RIMBP3CA6NJZ7 1639 aa12.54□□□□□ -0.4
TDP1-202ENST00000393452 RIMBP3BA6NNM3 1639 aa12.54□□□□□ -0.4
TDP1-202ENST00000393452 RIMBP3Q9UFD9 1639 aa12.54□□□□□ -0.4
TDP1-202ENST00000393452 ADGRL1O94910 1474 aa12.54□□□□□ -0.4
TDP1-202ENST00000393452 E9PCH4 1651 aa12.53□□□□□ -0.4
TDP1-202ENST00000393452 SCAPERQ9BY12 1400 aa12.53□□□□□ -0.4
TDP1-202ENST00000393452 VWDEQ8N2E2 1590 aa12.52□□□□□ -0.4
TDP1-202ENST00000393452 GPRASP1Q5JY77 1395 aa12.52□□□□□ -0.4
TDP1-202ENST00000393452 DHX29Q7Z478 1369 aaKnown RBP12.52□□□□□ -0.41
TDP1-202ENST00000393452 LAMC1P11047 1609 aa12.52□□□□□ -0.41
TDP1-202ENST00000393452 ROCK2O75116 1388 aaKnown RBP12.51□□□□□ -0.41
TDP1-202ENST00000393452 EIF2AK4Q9P2K8 1649 aaKnown RBP12.51□□□□□ -0.41
TDP1-202ENST00000393452 SUPT16HQ9Y5B9 1047 aaKnown RBP12.51□□□□□ -0.41
TDP1-202ENST00000393452 TET3O43151 1660 aa12.51□□□□□ -0.41
TDP1-202ENST00000393452 PTPRTO14522 1441 aa12.5□□□□□ -0.41
TDP1-202ENST00000393452 TRPM2O94759 1503 aa12.5□□□□□ -0.41
TDP1-202ENST00000393452 SPHKAPQ2M3C7 1700 aa12.49□□□□□ -0.41
TDP1-202ENST00000393452 ST20-MTHFSA0A0A6YYL1 179 aa12.49□□□□□ -0.41
TDP1-202ENST00000393452 PRDM15P57071 1507 aaPredicted RBP12.49□□□□□ -0.41
TDP1-202ENST00000393452 KIDINS220Q9ULH0 1771 aa12.49□□□□□ -0.41
TDP1-202ENST00000393452 NPM1P06748 294 aaKnown RBP eCLIP12.48□□□□□ -0.41
TDP1-202ENST00000393452 RGL3Q3MIN7 710 aa12.48□□□□□ -0.41
TDP1-202ENST00000393452 CCDC184Q52MB2 194 aa12.48□□□□□ -0.41
TDP1-202ENST00000393452 MROH1Q8NDA8 1641 aa12.48□□□□□ -0.41
TDP1-202ENST00000393452 ZNF518AQ6AHZ1 1483 aa12.47□□□□□ -0.41
TDP1-202ENST00000393452 CFAP74Q9C0B2 1584 aa12.47□□□□□ -0.41
TDP1-202ENST00000393452 CEP152O94986 1710 aa12.47□□□□□ -0.41
TDP1-202ENST00000393452 RNF17Q9BXT8 1623 aaKnown RBP12.46□□□□□ -0.42
TDP1-202ENST00000393452 KANK1Q14678 1352 aa12.45□□□□□ -0.42
TDP1-202ENST00000393452 NBPF1Q3BBV0 1214 aa12.45□□□□□ -0.42
TDP1-202ENST00000393452 NEURL4Q96JN8 1562 aa12.45□□□□□ -0.42
TDP1-202ENST00000393452 CLTCL1P53675 1640 aa12.45□□□□□ -0.42
TDP1-202ENST00000393452 CD109Q6YHK3 1445 aa12.45□□□□□ -0.42
TDP1-202ENST00000393452 HNRNPUQ00839 825 aaKnown RBP eCLIP12.44□□□□□ -0.42
TDP1-202ENST00000393452 MRS2Q9HD23 443 aa12.44□□□□□ -0.42
TDP1-202ENST00000393452 KIF3BO15066 747 aa12.43□□□□□ -0.42
TDP1-202ENST00000393452 STAC3Q96MF2 364 aa12.43□□□□□ -0.42
TDP1-202ENST00000393452 POGZQ7Z3K3 1410 aa12.43□□□□□ -0.42
TDP1-202ENST00000393452 MADDQ8WXG6 1647 aa12.43□□□□□ -0.42
TDP1-202ENST00000393452 MLH3Q9UHC1 1453 aa12.42□□□□□ -0.42
TDP1-202ENST00000393452 LMTK2Q8IWU2 1503 aa12.42□□□□□ -0.42
TDP1-202ENST00000393452 COL17A1Q9UMD9 1497 aaPredicted RBP12.41□□□□□ -0.42
TDP1-202ENST00000393452 POLR3GLQ9BT43 218 aa12.41□□□□□ -0.42
TDP1-202ENST00000393452 EFCAB6Q5THR3 1501 aa12.41□□□□□ -0.42
TDP1-202ENST00000393452 TESK2Q96S53 571 aa12.41□□□□□ -0.42
TDP1-202ENST00000393452 CYB5RLQ6IPT4 315 aa12.4□□□□□ -0.42
TDP1-202ENST00000393452 KTN1Q86UP2 1357 aaKnown RBP12.4□□□□□ -0.42
TDP1-202ENST00000393452 HECW2Q9P2P5 1572 aa12.4□□□□□ -0.42
TDP1-202ENST00000393452 NEO1Q92859 1461 aa12.39□□□□□ -0.43
TDP1-202ENST00000393452 MYT1LQ9UL68 1186 aa12.39□□□□□ -0.43
TDP1-202ENST00000393452 FRMPD1Q5SYB0 1578 aa12.39□□□□□ -0.43
TDP1-202ENST00000393452 PPRC1Q5VV67 1664 aaKnown RBP12.39□□□□□ -0.43
TDP1-202ENST00000393452 IQGAP1P46940 1657 aa12.39□□□□□ -0.43
TDP1-202ENST00000393452 FAM9BQ8IZU0 186 aa12.38□□□□□ -0.43
TDP1-202ENST00000393452 KIAA1210Q9ULL0 1709 aa12.38□□□□□ -0.43
TDP1-202ENST00000393452 ZBED9Q6R2W3 1325 aa12.37□□□□□ -0.43
TDP1-202ENST00000393452 FKBP8Q14318 412 aa12.37□□□□□ -0.43
TDP1-202ENST00000393452 KIF1BO60333 1816 aa12.37□□□□□ -0.43
TDP1-202ENST00000393452 DISP3Q9P2K9 1392 aa12.37□□□□□ -0.43
TDP1-202ENST00000393452 ABCA6Q8N139 1617 aa12.36□□□□□ -0.43
TDP1-202ENST00000393452 RALBP1Q15311 655 aa12.35□□□□□ -0.43
TDP1-202ENST00000393452 MYOM2P54296 1465 aa12.35□□□□□ -0.43
TDP1-202ENST00000393452 PER1O15534 1290 aaPredicted RBP12.35□□□□□ -0.43
TDP1-202ENST00000393452 NEFLP07196 543 aa12.35□□□□□ -0.43
TDP1-202ENST00000393452 MAP3K4Q9Y6R4 1608 aa12.35□□□□□ -0.43
TDP1-202ENST00000393452 IFT172Q9UG01 1749 aa12.34□□□□□ -0.43
TDP1-202ENST00000393452 UGGT1Q9NYU2 1555 aa12.34□□□□□ -0.43
TDP1-202ENST00000393452 BRD4O60885 1362 aaPredicted RBP12.34□□□□□ -0.43
TDP1-202ENST00000393452 SCAF11Q99590 1463 aaKnown RBP12.33□□□□□ -0.43
TDP1-202ENST00000393452 TMF1P82094 1093 aa12.33□□□□□ -0.44
TDP1-202ENST00000393452 MYBBP1AQ9BQG0 1328 aaKnown RBP12.33□□□□□ -0.44
TDP1-202ENST00000393452 WASHC2CQ9Y4E1 1318 aa12.33□□□□□ -0.44
TDP1-202ENST00000393452 PARD3Q8TEW0 1356 aa12.33□□□□□ -0.44
TDP1-202ENST00000393452 PNISRQ8TF01 805 aaKnown RBP12.33□□□□□ -0.44
TDP1-202ENST00000393452 RICTORQ6R327 1708 aa12.32□□□□□ -0.44
TDP1-202ENST00000393452 GLI2P10070 1586 aa12.32□□□□□ -0.44
TDP1-202ENST00000393452 MROH2AA6NES4 1674 aa12.32□□□□□ -0.44
TDP1-202ENST00000393452 NRXN1Q9ULB1 1477 aa12.32□□□□□ -0.44
TDP1-202ENST00000393452 NPATQ14207 1427 aa12.32□□□□□ -0.44
TDP1-202ENST00000393452 DIP2CQ9Y2E4 1556 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms