RNA–Protein interactions for RNA: ENST00000379236.3

TNFRSF4-201, Transcript of TNF receptor superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF4, Length 1,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4-201ENST00000379236 DMRT2Q9Y5R5 561 aa38.33■■■■□ 3.73
TNFRSF4-201ENST00000379236 DNMT1P26358 1616 aaKnown RBP38.33■■■■□ 3.73
TNFRSF4-201ENST00000379236 ZNF142P52746 1687 aaPredicted RBP38.33■■■■□ 3.73
TNFRSF4-201ENST00000379236 SHANK2Q9UPX8 1470 aa38.32■■■■□ 3.72
TNFRSF4-201ENST00000379236 WASHC2CQ9Y4E1 1318 aa38.32■■■■□ 3.72
TNFRSF4-201ENST00000379236 RNF17Q9BXT8 1623 aaKnown RBP38.31■■■■□ 3.72
TNFRSF4-201ENST00000379236 TCOF1Q13428 1488 aaKnown RBP38.3■■■■□ 3.72
TNFRSF4-201ENST00000379236 DUOX2Q9NRD8 1548 aa38.3■■■■□ 3.72
TNFRSF4-201ENST00000379236 ZC3H13Q5T200 1668 aaKnown RBP38.27■■■■□ 3.72
TNFRSF4-201ENST00000379236 ABCC5O15440 1437 aa38.27■■■■□ 3.72
TNFRSF4-201ENST00000379236 DAPK1P53355 1430 aa38.27■■■■□ 3.72
TNFRSF4-201ENST00000379236 CEP170BQ9Y4F5 1589 aaPredicted RBP38.27■■■■□ 3.72
TNFRSF4-201ENST00000379236 CAMSAP1Q5T5Y3 1602 aa38.26■■■■□ 3.71
TNFRSF4-201ENST00000379236 PZPP20742 1482 aa38.22■■■■□ 3.71
TNFRSF4-201ENST00000379236 KIF15Q9NS87 1388 aa38.21■■■■□ 3.71
TNFRSF4-201ENST00000379236 NCOA1Q15788 1441 aa38.21■■■■□ 3.71
TNFRSF4-201ENST00000379236 CEP152O94986 1710 aa38.18■■■■□ 3.7
TNFRSF4-201ENST00000379236 FBXO41Q8TF61 875 aa38.17■■■■□ 3.7
TNFRSF4-201ENST00000379236 RRP7BPQ9NSQ0 103 aa38.16■■■■□ 3.7
TNFRSF4-201ENST00000379236 PTPRTO14522 1441 aa38.15■■■■□ 3.7
TNFRSF4-201ENST00000379236 TNRQ92752 1358 aa38.15■■■■□ 3.7
TNFRSF4-201ENST00000379236 ERBINQ96RT1 1412 aa38.14■■■■□ 3.7
TNFRSF4-201ENST00000379236 ABCC3O15438 1527 aa38.14■■■■□ 3.7
TNFRSF4-201ENST00000379236 FAM50AQ14320 339 aaKnown RBP38.14■■■■□ 3.7
TNFRSF4-201ENST00000379236 MROH1Q8NDA8 1641 aa38.13■■■■□ 3.69
TNFRSF4-201ENST00000379236 A2ML1A8K2U0 1454 aa38.13■■■■□ 3.69
TNFRSF4-201ENST00000379236 ANKRD30AQ9BXX3 1397 aa38.12■■■■□ 3.69
TNFRSF4-201ENST00000379236 FBXO31Q5XUX0 539 aaPredicted RBP38.11■■■■□ 3.69
TNFRSF4-201ENST00000379236 CHIC2Q9UKJ5 165 aa38.11■■■■□ 3.69
TNFRSF4-201ENST00000379236 PLA2R1Q13018 1463 aa38.09■■■■□ 3.69
TNFRSF4-201ENST00000379236 CFAP65Q6ZU64 1925 aaKnown RBP38.08■■■■□ 3.69
TNFRSF4-201ENST00000379236 CERKQ8TCT0 537 aa38.06■■■■□ 3.68
TNFRSF4-201ENST00000379236 PRDM15P57071 1507 aaPredicted RBP38.05■■■■□ 3.68
TNFRSF4-201ENST00000379236 NCKAP5LQ9HCH0 1330 aa38.03■■■■□ 3.68
TNFRSF4-201ENST00000379236 DEPDC5O75140 1603 aa38.02■■■■□ 3.68
TNFRSF4-201ENST00000379236 PKD2Q13563 968 aa38.01■■■■□ 3.68
TNFRSF4-201ENST00000379236 POLR1AO95602 1720 aaPredicted RBP38.01■■■■□ 3.67
TNFRSF4-201ENST00000379236 NLRP1Q9C000 1473 aa38■■■■□ 3.67
TNFRSF4-201ENST00000379236 KANK1Q14678 1352 aa37.99■■■■□ 3.67
TNFRSF4-201ENST00000379236 GRWD1Q9BQ67 446 aaKnown RBP eCLIP37.98■■■■□ 3.67
TNFRSF4-201ENST00000379236 SPATA31D1Q6ZQQ2 1576 aa37.97■■■■□ 3.67
TNFRSF4-201ENST00000379236 ADGRL2O95490 1459 aa37.97■■■■□ 3.67
TNFRSF4-201ENST00000379236 ERVK-7P63135 1459 aa37.94■■■■□ 3.66
TNFRSF4-201ENST00000379236 UGGT1Q9NYU2 1555 aa37.93■■■■□ 3.66
TNFRSF4-201ENST00000379236 PPARGC1BQ86YN6 1023 aaKnown RBP37.89■■■■□ 3.66
TNFRSF4-201ENST00000379236 THEMISQ8N1K5 641 aaPredicted RBP37.88■■■■□ 3.65
TNFRSF4-201ENST00000379236 ARHGAP31Q2M1Z3 1444 aa37.85■■■■□ 3.65
TNFRSF4-201ENST00000379236 LTBP4Q8N2S1 1624 aa37.83■■■■□ 3.65
TNFRSF4-201ENST00000379236 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP37.82■■■■□ 3.65
TNFRSF4-201ENST00000379236 ANKRD50Q9ULJ7 1429 aa37.81■■■■□ 3.64
TNFRSF4-201ENST00000379236 LMTK2Q8IWU2 1503 aa37.79■■■■□ 3.64
TNFRSF4-201ENST00000379236 ANKLE2Q86XL3 938 aa37.79■■■■□ 3.64
TNFRSF4-201ENST00000379236 VWDEQ8N2E2 1590 aa37.79■■■■□ 3.64
TNFRSF4-201ENST00000379236 NEURL4Q96JN8 1562 aa37.79■■■■□ 3.64
TNFRSF4-201ENST00000379236 UBR1Q8IWV7 1749 aa37.78■■■■□ 3.64
TNFRSF4-201ENST00000379236 ZNF335Q9H4Z2 1342 aaPredicted RBP37.74■■■■□ 3.63
TNFRSF4-201ENST00000379236 ITGAEP38570 1179 aa37.73■■■■□ 3.63
TNFRSF4-201ENST00000379236 EFCAB6Q5THR3 1501 aa37.72■■■■□ 3.63
TNFRSF4-201ENST00000379236 IQSEC2Q5JU85 1478 aa37.71■■■■□ 3.63
TNFRSF4-201ENST00000379236 IQGAP1P46940 1657 aa37.69■■■■□ 3.62
TNFRSF4-201ENST00000379236 ROCK1Q13464 1354 aa37.69■■■■□ 3.62
TNFRSF4-201ENST00000379236 PIK3C2BO00750 1634 aa37.68■■■■□ 3.62
TNFRSF4-201ENST00000379236 NPHP4O75161 1426 aaPredicted RBP37.66■■■■□ 3.62
TNFRSF4-201ENST00000379236 UNC13BO14795 1591 aa37.66■■■■□ 3.62
TNFRSF4-201ENST00000379236 TET3O43151 1660 aa37.65■■■■□ 3.62
TNFRSF4-201ENST00000379236 GCC2Q8IWJ2 1684 aa37.64■■■■□ 3.62
TNFRSF4-201ENST00000379236 MED14O60244 1454 aa37.64■■■■□ 3.62
TNFRSF4-201ENST00000379236 STAG3Q9UJ98 1225 aa37.63■■■■□ 3.61
TNFRSF4-201ENST00000379236 KDM5AP29375 1690 aaKnown RBP37.6■■■■□ 3.61
TNFRSF4-201ENST00000379236 SYNMO15061 1565 aa37.59■■■■□ 3.61
TNFRSF4-201ENST00000379236 RPRD2Q5VT52 1461 aaKnown RBP37.57■■■■□ 3.6
TNFRSF4-201ENST00000379236 SCAF11Q99590 1463 aaKnown RBP37.55■■■■□ 3.6
TNFRSF4-201ENST00000379236 SLIT1O75093 1534 aa37.55■■■■□ 3.6
TNFRSF4-201ENST00000379236 CPS1P31327 1500 aa37.55■■■■□ 3.6
TNFRSF4-201ENST00000379236 NOS1P29475 1434 aa37.53■■■■□ 3.6
TNFRSF4-201ENST00000379236 IQGAP3Q86VI3 1631 aa37.52■■■■□ 3.6
TNFRSF4-201ENST00000379236 EID1Q9Y6B2 187 aa37.52■■■■□ 3.6
TNFRSF4-201ENST00000379236 RRBP1Q9P2E9 1410 aaKnown RBP37.52■■■■□ 3.6
TNFRSF4-201ENST00000379236 ARHGAP23Q9P227 1491 aa37.51■■■■□ 3.59
TNFRSF4-201ENST00000379236 IDI1Q13907 227 aa37.49■■■■□ 3.59
TNFRSF4-201ENST00000379236 TXNDC2Q86VQ3 553 aa37.49■■■■□ 3.59
TNFRSF4-201ENST00000379236 ADGRB3O60242 1522 aa37.48■■■■□ 3.59
TNFRSF4-201ENST00000379236 E9PCH4 1651 aa37.47■■■■□ 3.59
TNFRSF4-201ENST00000379236 SLC52A1Q9NWF4 448 aa37.46■■■■□ 3.59
TNFRSF4-201ENST00000379236 TMEM2Q9UHN6 1383 aa37.44■■■■□ 3.58
TNFRSF4-201ENST00000379236 UBAP1LF5GYI3 381 aa37.43■■■■□ 3.58
TNFRSF4-201ENST00000379236 NUP155O75694 1391 aa37.42■■■■□ 3.58
TNFRSF4-201ENST00000379236 MYO5BQ9ULV0 1848 aa37.42■■■■□ 3.58
TNFRSF4-201ENST00000379236 LTKP29376 864 aa37.41■■■■□ 3.58
TNFRSF4-201ENST00000379236 STRCP1A6NGW2 1772 aa37.37■■■■□ 3.57
TNFRSF4-201ENST00000379236 TMEM131LA2VDJ0 1609 aa37.29■■■■□ 3.56
TNFRSF4-201ENST00000379236 CHGAP10645 457 aaKnown RBP37.27■■■■□ 3.56
TNFRSF4-201ENST00000379236 SPHKAPQ2M3C7 1700 aa37.27■■■■□ 3.56
TNFRSF4-201ENST00000379236 TOM1O60784 492 aa37.25■■■■□ 3.55
TNFRSF4-201ENST00000379236 BCANQ96GW7 911 aa37.25■■■■□ 3.55
TNFRSF4-201ENST00000379236 SCAF1Q9H7N4 1312 aaKnown RBP37.25■■■■□ 3.55
TNFRSF4-201ENST00000379236 NAIPQ13075 1403 aa37.24■■■■□ 3.55
TNFRSF4-201ENST00000379236 HDGFP51858 240 aaKnown RBP37.23■■■■□ 3.55
TNFRSF4-201ENST00000379236 LRRC7Q96NW7 1537 aa37.22■■■■□ 3.55
TNFRSF4-201ENST00000379236 PPP1R15AO75807 674 aaPredicted RBP37.21■■■■□ 3.55
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms