RNA–Protein interactions for RNA: ENST00000375740.7

MSH5-202, Transcript of mutS homolog 5, humanhuman

TSL 1 (best) BASIC

Gene MSH5, Length 2,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-202ENST00000375740 RALGAPBQ86X10 1494 aa19.29■□□□□ 0.68
MSH5-202ENST00000375740 KDM5CP41229 1560 aa19.29■□□□□ 0.68
MSH5-202ENST00000375740 BCORL1Q5H9F3 1711 aa19.28■□□□□ 0.68
MSH5-202ENST00000375740 CARD11Q9BXL7 1154 aa19.28■□□□□ 0.68
MSH5-202ENST00000375740 PRKRIP1Q9H875 184 aaPredicted RBP19.28■□□□□ 0.68
MSH5-202ENST00000375740 IQGAP3Q86VI3 1631 aa19.28■□□□□ 0.68
MSH5-202ENST00000375740 CCDC144AA2RUR9 1427 aa19.28■□□□□ 0.68
MSH5-202ENST00000375740 PLA2R1Q13018 1463 aa19.27■□□□□ 0.68
MSH5-202ENST00000375740 WDR7Q9Y4E6 1490 aa19.27■□□□□ 0.68
MSH5-202ENST00000375740 ERBINQ96RT1 1412 aa19.27■□□□□ 0.68
MSH5-202ENST00000375740 AFAP1Q8N556 730 aa19.27■□□□□ 0.67
MSH5-202ENST00000375740 ARAP3Q8WWN8 1544 aa19.26■□□□□ 0.67
MSH5-202ENST00000375740 SPAG9O60271 1321 aaKnown RBP19.25■□□□□ 0.67
MSH5-202ENST00000375740 CCDC184Q52MB2 194 aa19.25■□□□□ 0.67
MSH5-202ENST00000375740 RGL3Q3MIN7 710 aa19.24■□□□□ 0.67
MSH5-202ENST00000375740 POLR3GLQ9BT43 218 aa19.24■□□□□ 0.67
MSH5-202ENST00000375740 MAGI2Q86UL8 1455 aa19.23■□□□□ 0.67
MSH5-202ENST00000375740 ARID4BQ4LE39 1312 aaPredicted RBP19.21■□□□□ 0.67
MSH5-202ENST00000375740 RTEL1-TNFRSF6BF6WH68 1400 aa19.21■□□□□ 0.67
MSH5-202ENST00000375740 HNRNPUQ00839 825 aaKnown RBP eCLIP19.2■□□□□ 0.66
MSH5-202ENST00000375740 OSCARQ8IYS5 282 aa19.2■□□□□ 0.66
MSH5-202ENST00000375740 ST20-MTHFSA0A0A6YYL1 179 aa19.19■□□□□ 0.66
MSH5-202ENST00000375740 FANCAO15360 1455 aa19.19■□□□□ 0.66
MSH5-202ENST00000375740 ABCA9Q8IUA7 1624 aa19.19■□□□□ 0.66
MSH5-202ENST00000375740 ASXL2Q76L83 1435 aa19.18■□□□□ 0.66
MSH5-202ENST00000375740 ROCK2O75116 1388 aaKnown RBP19.18■□□□□ 0.66
MSH5-202ENST00000375740 PRAG1Q86YV5 1406 aa19.18■□□□□ 0.66
MSH5-202ENST00000375740 ZFYVE16Q7Z3T8 1539 aa19.18■□□□□ 0.66
MSH5-202ENST00000375740 ATP10AO60312 1499 aa19.17■□□□□ 0.66
MSH5-202ENST00000375740 MRS2Q9HD23 443 aa19.17■□□□□ 0.66
MSH5-202ENST00000375740 DHX29Q7Z478 1369 aaKnown RBP19.16■□□□□ 0.66
MSH5-202ENST00000375740 A2MP01023 1474 aa19.16■□□□□ 0.66
MSH5-202ENST00000375740 TRPM1Q7Z4N2 1603 aa19.15■□□□□ 0.66
MSH5-202ENST00000375740 NBPF1Q3BBV0 1214 aa19.14■□□□□ 0.65
MSH5-202ENST00000375740 SCAPERQ9BY12 1400 aa19.14■□□□□ 0.65
MSH5-202ENST00000375740 FAM9BQ8IZU0 186 aa19.13■□□□□ 0.65
MSH5-202ENST00000375740 MYT1LQ9UL68 1186 aa19.13■□□□□ 0.65
MSH5-202ENST00000375740 ADGRL1O94910 1474 aa19.13■□□□□ 0.65
MSH5-202ENST00000375740 NPM1P06748 294 aaKnown RBP eCLIP19.12■□□□□ 0.65
MSH5-202ENST00000375740 NEFLP07196 543 aa19.12■□□□□ 0.65
MSH5-202ENST00000375740 CNGB1Q14028 1251 aaPredicted RBP19.12■□□□□ 0.65
MSH5-202ENST00000375740 ATP7AQ04656 1500 aa19.12■□□□□ 0.65
MSH5-202ENST00000375740 E9PCH4 1651 aa19.11■□□□□ 0.65
MSH5-202ENST00000375740 INO80Q9ULG1 1556 aaPredicted RBP19.1■□□□□ 0.65
MSH5-202ENST00000375740 DEPDC5O75140 1603 aa19.08■□□□□ 0.64
MSH5-202ENST00000375740 GPRASP1Q5JY77 1395 aa19.08■□□□□ 0.64
MSH5-202ENST00000375740 KIF3BO15066 747 aa19.07■□□□□ 0.64
MSH5-202ENST00000375740 PRKCSHP14314 528 aaPredicted RBP19.05■□□□□ 0.64
MSH5-202ENST00000375740 KANK1Q14678 1352 aa19.04■□□□□ 0.64
MSH5-202ENST00000375740 EIF2AK4Q9P2K8 1649 aaKnown RBP19.04■□□□□ 0.64
MSH5-202ENST00000375740 LAMC1P11047 1609 aa19.03■□□□□ 0.64
MSH5-202ENST00000375740 PTPRTO14522 1441 aa19.03■□□□□ 0.64
MSH5-202ENST00000375740 TRPM2O94759 1503 aa19.02■□□□□ 0.64
MSH5-202ENST00000375740 TET3O43151 1660 aa19.02■□□□□ 0.64
MSH5-202ENST00000375740 SPHKAPQ2M3C7 1700 aa19.02■□□□□ 0.64
MSH5-202ENST00000375740 PRDM15P57071 1507 aaPredicted RBP19.02■□□□□ 0.64
MSH5-202ENST00000375740 VWDEQ8N2E2 1590 aa19.01■□□□□ 0.63
MSH5-202ENST00000375740 KIDINS220Q9ULH0 1771 aa19■□□□□ 0.63
MSH5-202ENST00000375740 CD109Q6YHK3 1445 aa18.99■□□□□ 0.63
MSH5-202ENST00000375740 CLTCL1P53675 1640 aa18.99■□□□□ 0.63
MSH5-202ENST00000375740 TESK2Q96S53 571 aa18.99■□□□□ 0.63
MSH5-202ENST00000375740 CEP152O94986 1710 aa18.99■□□□□ 0.63
MSH5-202ENST00000375740 IRX6P78412 446 aaPredicted RBP18.98■□□□□ 0.63
MSH5-202ENST00000375740 ZBED9Q6R2W3 1325 aa18.98■□□□□ 0.63
MSH5-202ENST00000375740 MROH1Q8NDA8 1641 aa18.98■□□□□ 0.63
MSH5-202ENST00000375740 ZNF518AQ6AHZ1 1483 aa18.97■□□□□ 0.63
MSH5-202ENST00000375740 FANCIQ9NVI1 1328 aa18.96■□□□□ 0.63
MSH5-202ENST00000375740 DISP3Q9P2K9 1392 aa18.95■□□□□ 0.62
MSH5-202ENST00000375740 MADDQ8WXG6 1647 aa18.95■□□□□ 0.62
MSH5-202ENST00000375740 COL17A1Q9UMD9 1497 aaPredicted RBP18.94■□□□□ 0.62
MSH5-202ENST00000375740 RNF17Q9BXT8 1623 aaKnown RBP18.94■□□□□ 0.62
MSH5-202ENST00000375740 ERICH6Q7L0X2 663 aa18.94■□□□□ 0.62
MSH5-202ENST00000375740 TMC1Q8TDI8 760 aa18.94■□□□□ 0.62
MSH5-202ENST00000375740 RALBP1Q15311 655 aa18.94■□□□□ 0.62
MSH5-202ENST00000375740 STAC3Q96MF2 364 aa18.94■□□□□ 0.62
MSH5-202ENST00000375740 PNISRQ8TF01 805 aaKnown RBP18.93■□□□□ 0.62
MSH5-202ENST00000375740 TMF1P82094 1093 aa18.92■□□□□ 0.62
MSH5-202ENST00000375740 CFAP74Q9C0B2 1584 aa18.92■□□□□ 0.62
MSH5-202ENST00000375740 KTN1Q86UP2 1357 aaKnown RBP18.92■□□□□ 0.62
MSH5-202ENST00000375740 MYBBP1AQ9BQG0 1328 aaKnown RBP18.91■□□□□ 0.62
MSH5-202ENST00000375740 PER1O15534 1290 aaPredicted RBP18.91■□□□□ 0.62
MSH5-202ENST00000375740 POGZQ7Z3K3 1410 aa18.91■□□□□ 0.62
MSH5-202ENST00000375740 UGGT1Q9NYU2 1555 aa18.89■□□□□ 0.61
MSH5-202ENST00000375740 EFCAB6Q5THR3 1501 aa18.88■□□□□ 0.61
MSH5-202ENST00000375740 MLH3Q9UHC1 1453 aa18.88■□□□□ 0.61
MSH5-202ENST00000375740 DEKP35659 375 aaKnown RBP18.88■□□□□ 0.61
MSH5-202ENST00000375740 BRD4O60885 1362 aaPredicted RBP18.88■□□□□ 0.61
MSH5-202ENST00000375740 PANK3Q9H999 370 aa18.87■□□□□ 0.61
MSH5-202ENST00000375740 IQGAP1P46940 1657 aa18.87■□□□□ 0.61
MSH5-202ENST00000375740 PPRC1Q5VV67 1664 aaKnown RBP18.87■□□□□ 0.61
MSH5-202ENST00000375740 LMTK2Q8IWU2 1503 aa18.86■□□□□ 0.61
MSH5-202ENST00000375740 GGT6Q6P531 493 aa18.86■□□□□ 0.61
MSH5-202ENST00000375740 PARD3Q8TEW0 1356 aa18.85■□□□□ 0.61
MSH5-202ENST00000375740 NEURL4Q96JN8 1562 aa18.85■□□□□ 0.61
MSH5-202ENST00000375740 HECW2Q9P2P5 1572 aa18.85■□□□□ 0.61
MSH5-202ENST00000375740 FRMPD1Q5SYB0 1578 aa18.84■□□□□ 0.61
MSH5-202ENST00000375740 KIF1BO60333 1816 aa18.84■□□□□ 0.61
MSH5-202ENST00000375740 SCAF11Q99590 1463 aaKnown RBP18.84■□□□□ 0.61
MSH5-202ENST00000375740 RAPGEF3O95398 923 aa18.84■□□□□ 0.61
MSH5-202ENST00000375740 WASHC2CQ9Y4E1 1318 aa18.83■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms