RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 RTL5Q5HYW3 569 aaPredicted RBP28.3■■■□□ 2.12
UPF3A-202ENST00000375299 CDC42BPAQ5VT25 1732 aa28.29■■■□□ 2.12
UPF3A-202ENST00000375299 RALBP1Q15311 655 aa28.29■■■□□ 2.12
UPF3A-202ENST00000375299 ABCC10Q5T3U5 1492 aa28.27■■■□□ 2.12
UPF3A-202ENST00000375299 PLEKHD1A6NEE1 506 aa28.27■■■□□ 2.12
UPF3A-202ENST00000375299 ATP10BO94823 1461 aa28.27■■■□□ 2.12
UPF3A-202ENST00000375299 KDM5DQ9BY66 1539 aa28.23■■■□□ 2.11
UPF3A-202ENST00000375299 TCERG1O14776 1098 aaKnown RBP28.23■■■□□ 2.11
UPF3A-202ENST00000375299 SHANK2Q9UPX8 1470 aa28.22■■■□□ 2.11
UPF3A-202ENST00000375299 EXOC6Q8TAG9 804 aa28.22■■■□□ 2.11
UPF3A-202ENST00000375299 ST20-MTHFSA0A0A6YYL1 179 aa28.22■■■□□ 2.11
UPF3A-202ENST00000375299 NUP155O75694 1391 aa28.21■■■□□ 2.11
UPF3A-202ENST00000375299 RCAN3Q9UKA8 241 aa28.2■■■□□ 2.1
UPF3A-202ENST00000375299 C9orf84Q5VXU9 1444 aa28.19■■■□□ 2.1
UPF3A-202ENST00000375299 PDE3BQ13370 1112 aa28.16■■■□□ 2.1
UPF3A-202ENST00000375299 PARD3Q8TEW0 1356 aa28.14■■■□□ 2.09
UPF3A-202ENST00000375299 NLRP13Q86W25 1043 aa28.13■■■□□ 2.09
UPF3A-202ENST00000375299 KDM2AQ9Y2K7 1162 aa28.13■■■□□ 2.09
UPF3A-202ENST00000375299 PDE4AP27815 886 aa28.13■■■□□ 2.09
UPF3A-202ENST00000375299 NPM2Q86SE8 214 aaKnown RBP28.12■■■□□ 2.09
UPF3A-202ENST00000375299 MS4A1P11836 297 aa28.11■■■□□ 2.09
UPF3A-202ENST00000375299 PTPRGP23470 1445 aa28.1■■■□□ 2.09
UPF3A-202ENST00000375299 TSPY4P0CV99 314 aa28.1■■■□□ 2.09
UPF3A-202ENST00000375299 TSPY10P0CW01 314 aa28.1■■■□□ 2.09
UPF3A-202ENST00000375299 DCAF11Q8TEB1 546 aa28.1■■■□□ 2.09
UPF3A-202ENST00000375299 BACH2Q9BYV9 841 aa28.09■■■□□ 2.09
UPF3A-202ENST00000375299 ARHGEF5Q12774 1597 aa28.08■■■□□ 2.09
UPF3A-202ENST00000375299 TRPM1Q7Z4N2 1603 aa28.08■■■□□ 2.09
UPF3A-202ENST00000375299 SALL2Q9Y467 1007 aaPredicted RBP28.07■■■□□ 2.08
UPF3A-202ENST00000375299 HNRNPMP52272 730 aaKnown RBP eCLIP28.05■■■□□ 2.083e-6■■■■□ 21.2
UPF3A-202ENST00000375299 ZMYM4Q5VZL5 1548 aa28.02■■■□□ 2.08
UPF3A-202ENST00000375299 INSRP06213 1382 aa28.01■■■□□ 2.07
UPF3A-202ENST00000375299 USP35Q9P2H5 1018 aa28.01■■■□□ 2.07
UPF3A-202ENST00000375299 PRAG1Q86YV5 1406 aa28■■■□□ 2.07
UPF3A-202ENST00000375299 SAMD9LQ8IVG5 1584 aa28■■■□□ 2.07
UPF3A-202ENST00000375299 CDC42BPBQ9Y5S2 1711 aa27.99■■■□□ 2.07
UPF3A-202ENST00000375299 BLMP54132 1417 aaPredicted RBP27.99■■■□□ 2.07
UPF3A-202ENST00000375299 CDCA7LQ96GN5 454 aa27.99■■■□□ 2.07
UPF3A-202ENST00000375299 PREX2Q70Z35 1606 aa27.99■■■□□ 2.07
UPF3A-202ENST00000375299 PER1O15534 1290 aaPredicted RBP27.98■■■□□ 2.07
UPF3A-202ENST00000375299 CCDC141Q6ZP82 1450 aa27.98■■■□□ 2.07
UPF3A-202ENST00000375299 LAS1LQ9Y4W2 734 aaKnown RBP27.97■■■□□ 2.07
UPF3A-202ENST00000375299 COL17A1Q9UMD9 1497 aaPredicted RBP27.96■■■□□ 2.07
UPF3A-202ENST00000375299 FAM135AQ9P2D6 1515 aa27.96■■■□□ 2.07
UPF3A-202ENST00000375299 NEFMP07197 916 aa27.96■■■□□ 2.07
UPF3A-202ENST00000375299 LAMC1P11047 1609 aa27.96■■■□□ 2.07
UPF3A-202ENST00000375299 WASHC2CQ9Y4E1 1318 aa27.94■■■□□ 2.06
UPF3A-202ENST00000375299 PPM1GO15355 546 aaPredicted RBP27.94■■■□□ 2.06
UPF3A-202ENST00000375299 PLEKHH2Q8IVE3 1493 aa27.94■■■□□ 2.06
UPF3A-202ENST00000375299 GPRASP1Q5JY77 1395 aa27.93■■■□□ 2.06
UPF3A-202ENST00000375299 CCDC144AA2RUR9 1427 aa27.91■■■□□ 2.06
UPF3A-202ENST00000375299 PLIN1O60240 522 aa27.91■■■□□ 2.06
UPF3A-202ENST00000375299 RSPH4AQ5TD94 716 aa27.91■■■□□ 2.06
UPF3A-202ENST00000375299 PRDM15P57071 1507 aaPredicted RBP27.9■■■□□ 2.06
UPF3A-202ENST00000375299 CRBNQ96SW2 442 aa27.9■■■□□ 2.06
UPF3A-202ENST00000375299 CHD1O14646 1710 aa27.89■■■□□ 2.05
UPF3A-202ENST00000375299 DDRGK1Q96HY6 314 aa27.88■■■□□ 2.05
UPF3A-202ENST00000375299 NBPF1Q3BBV0 1214 aa27.86■■■□□ 2.05
UPF3A-202ENST00000375299 CC2D1BQ5T0F9 858 aaKnown RBP27.86■■■□□ 2.05
UPF3A-202ENST00000375299 DISP3Q9P2K9 1392 aa27.86■■■□□ 2.05
UPF3A-202ENST00000375299 SYCP2Q9BX26 1530 aa27.85■■■□□ 2.05
UPF3A-202ENST00000375299 TTC37Q6PGP7 1564 aa27.85■■■□□ 2.05
UPF3A-202ENST00000375299 A2MP01023 1474 aa27.85■■■□□ 2.05
UPF3A-202ENST00000375299 MYO5CQ9NQX4 1742 aa27.84■■■□□ 2.05
UPF3A-202ENST00000375299 SHROOM2Q13796 1616 aa27.84■■■□□ 2.05
UPF3A-202ENST00000375299 MAST1Q9Y2H9 1570 aa27.83■■■□□ 2.05
UPF3A-202ENST00000375299 EIF2AK4Q9P2K8 1649 aaKnown RBP27.83■■■□□ 2.05
UPF3A-202ENST00000375299 IL27Q8NEV9 243 aa27.82■■■□□ 2.04
UPF3A-202ENST00000375299 TESK2Q96S53 571 aa27.82■■■□□ 2.04
UPF3A-202ENST00000375299 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.82■■■□□ 2.04
UPF3A-202ENST00000375299 UNC13BO14795 1591 aa27.82■■■□□ 2.04
UPF3A-202ENST00000375299 ERBINQ96RT1 1412 aa27.82■■■□□ 2.04
UPF3A-202ENST00000375299 ARHGAP5Q13017 1502 aa27.81■■■□□ 2.04
UPF3A-202ENST00000375299 PANK3Q9H999 370 aa27.8■■■□□ 2.04
UPF3A-202ENST00000375299 SKAP1Q86WV1 359 aa27.8■■■□□ 2.04
UPF3A-202ENST00000375299 PLA2R1Q13018 1463 aa27.79■■■□□ 2.04
UPF3A-202ENST00000375299 RGL3Q3MIN7 710 aa27.79■■■□□ 2.04
UPF3A-202ENST00000375299 KDM2BQ8NHM5 1336 aa27.77■■■□□ 2.04
UPF3A-202ENST00000375299 TMF1P82094 1093 aa27.74■■■□□ 2.03
UPF3A-202ENST00000375299 ABCC2Q92887 1545 aa27.74■■■□□ 2.03
UPF3A-202ENST00000375299 C20orf194Q5TEA3 1177 aa27.74■■■□□ 2.03
UPF3A-202ENST00000375299 PLXNC1O60486 1568 aa27.73■■■□□ 2.03
UPF3A-202ENST00000375299 ERCC6L2Q5T890 1561 aa27.73■■■□□ 2.03
UPF3A-202ENST00000375299 IQGAP3Q86VI3 1631 aa27.72■■■□□ 2.03
UPF3A-202ENST00000375299 RNF17Q9BXT8 1623 aaKnown RBP27.72■■■□□ 2.03
UPF3A-202ENST00000375299 CENPQQ7L2Z9 268 aaPredicted RBP27.71■■■□□ 2.03
UPF3A-202ENST00000375299 ADAMTS8Q9UP79 889 aa27.69■■■□□ 2.02
UPF3A-202ENST00000375299 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.68■■■□□ 2.025e-8■■■■□ 20.3
UPF3A-202ENST00000375299 ANO8Q9HCE9 1232 aaPredicted RBP27.66■■■□□ 2.02
UPF3A-202ENST00000375299 PLEKHH1Q9ULM0 1364 aa27.66■■■□□ 2.02
UPF3A-202ENST00000375299 DUSP27Q5VZP5 1158 aa27.65■■■□□ 2.02
UPF3A-202ENST00000375299 NFKBIBQ15653 356 aa27.65■■■□□ 2.02
UPF3A-202ENST00000375299 DUOX2Q9NRD8 1548 aa27.64■■■□□ 2.02
UPF3A-202ENST00000375299 RTN4Q9NQC3 1192 aaKnown RBP27.64■■■□□ 2.02
UPF3A-202ENST00000375299 CLASP1Q7Z460 1538 aa27.63■■■□□ 2.01
UPF3A-202ENST00000375299 GSE1Q14687 1217 aa27.63■■■□□ 2.01
UPF3A-202ENST00000375299 FAM161AQ3B820 660 aa27.63■■■□□ 2.01
UPF3A-202ENST00000375299 ATP10AO60312 1499 aa27.63■■■□□ 2.01
UPF3A-202ENST00000375299 MAGI2Q86UL8 1455 aa27.62■■■□□ 2.01
UPF3A-202ENST00000375299 WDR7Q9Y4E6 1490 aa27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms