RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 RTL5Q5HYW3 569 aaPredicted RBP28.3■■■□□ 2.12
UPF3A-202ENST00000375299 CDC42BPAQ5VT25 1732 aa28.29■■■□□ 2.12
UPF3A-202ENST00000375299 RALBP1Q15311 655 aa28.29■■■□□ 2.12
UPF3A-202ENST00000375299 ABCC10Q5T3U5 1492 aa28.27■■■□□ 2.12
UPF3A-202ENST00000375299 PLEKHD1A6NEE1 506 aa28.27■■■□□ 2.12
UPF3A-202ENST00000375299 ATP10BO94823 1461 aa28.27■■■□□ 2.12
UPF3A-202ENST00000375299 KDM5DQ9BY66 1539 aa28.23■■■□□ 2.11
UPF3A-202ENST00000375299 TCERG1O14776 1098 aaKnown RBP28.23■■■□□ 2.11
UPF3A-202ENST00000375299 SHANK2Q9UPX8 1470 aa28.22■■■□□ 2.11
UPF3A-202ENST00000375299 EXOC6Q8TAG9 804 aa28.22■■■□□ 2.11
UPF3A-202ENST00000375299 ST20-MTHFSA0A0A6YYL1 179 aa28.22■■■□□ 2.11
UPF3A-202ENST00000375299 NUP155O75694 1391 aa28.21■■■□□ 2.11
UPF3A-202ENST00000375299 RCAN3Q9UKA8 241 aa28.2■■■□□ 2.1
UPF3A-202ENST00000375299 C9orf84Q5VXU9 1444 aa28.19■■■□□ 2.1
UPF3A-202ENST00000375299 PDE3BQ13370 1112 aa28.16■■■□□ 2.1
UPF3A-202ENST00000375299 PARD3Q8TEW0 1356 aa28.14■■■□□ 2.09
UPF3A-202ENST00000375299 NLRP13Q86W25 1043 aa28.13■■■□□ 2.09
UPF3A-202ENST00000375299 KDM2AQ9Y2K7 1162 aa28.13■■■□□ 2.09
UPF3A-202ENST00000375299 PDE4AP27815 886 aa28.13■■■□□ 2.09
UPF3A-202ENST00000375299 NPM2Q86SE8 214 aaKnown RBP28.12■■■□□ 2.09
UPF3A-202ENST00000375299 MS4A1P11836 297 aa28.11■■■□□ 2.09
UPF3A-202ENST00000375299 PTPRGP23470 1445 aa28.1■■■□□ 2.09
UPF3A-202ENST00000375299 TSPY4P0CV99 314 aa28.1■■■□□ 2.09
UPF3A-202ENST00000375299 TSPY10P0CW01 314 aa28.1■■■□□ 2.09
UPF3A-202ENST00000375299 DCAF11Q8TEB1 546 aa28.1■■■□□ 2.09
UPF3A-202ENST00000375299 BACH2Q9BYV9 841 aa28.09■■■□□ 2.09
UPF3A-202ENST00000375299 ARHGEF5Q12774 1597 aa28.08■■■□□ 2.09
UPF3A-202ENST00000375299 TRPM1Q7Z4N2 1603 aa28.08■■■□□ 2.09
UPF3A-202ENST00000375299 SALL2Q9Y467 1007 aaPredicted RBP28.07■■■□□ 2.08
UPF3A-202ENST00000375299 HNRNPMP52272 730 aaKnown RBP eCLIP28.05■■■□□ 2.083e-6■■■■□ 21.2
UPF3A-202ENST00000375299 ZMYM4Q5VZL5 1548 aa28.02■■■□□ 2.08
UPF3A-202ENST00000375299 INSRP06213 1382 aa28.01■■■□□ 2.07
UPF3A-202ENST00000375299 USP35Q9P2H5 1018 aa28.01■■■□□ 2.07
UPF3A-202ENST00000375299 PRAG1Q86YV5 1406 aa28■■■□□ 2.07
UPF3A-202ENST00000375299 SAMD9LQ8IVG5 1584 aa28■■■□□ 2.07
UPF3A-202ENST00000375299 CDC42BPBQ9Y5S2 1711 aa27.99■■■□□ 2.07
UPF3A-202ENST00000375299 BLMP54132 1417 aaPredicted RBP27.99■■■□□ 2.07
UPF3A-202ENST00000375299 CDCA7LQ96GN5 454 aa27.99■■■□□ 2.07
UPF3A-202ENST00000375299 PREX2Q70Z35 1606 aa27.99■■■□□ 2.07
UPF3A-202ENST00000375299 PER1O15534 1290 aaPredicted RBP27.98■■■□□ 2.07
UPF3A-202ENST00000375299 CCDC141Q6ZP82 1450 aa27.98■■■□□ 2.07
UPF3A-202ENST00000375299 LAS1LQ9Y4W2 734 aaKnown RBP27.97■■■□□ 2.07
UPF3A-202ENST00000375299 COL17A1Q9UMD9 1497 aaPredicted RBP27.96■■■□□ 2.07
UPF3A-202ENST00000375299 FAM135AQ9P2D6 1515 aa27.96■■■□□ 2.07
UPF3A-202ENST00000375299 NEFMP07197 916 aa27.96■■■□□ 2.07
UPF3A-202ENST00000375299 LAMC1P11047 1609 aa27.96■■■□□ 2.07
UPF3A-202ENST00000375299 WASHC2CQ9Y4E1 1318 aa27.94■■■□□ 2.06
UPF3A-202ENST00000375299 PPM1GO15355 546 aaPredicted RBP27.94■■■□□ 2.06
UPF3A-202ENST00000375299 PLEKHH2Q8IVE3 1493 aa27.94■■■□□ 2.06
UPF3A-202ENST00000375299 GPRASP1Q5JY77 1395 aa27.93■■■□□ 2.06
UPF3A-202ENST00000375299 CCDC144AA2RUR9 1427 aa27.91■■■□□ 2.06
UPF3A-202ENST00000375299 PLIN1O60240 522 aa27.91■■■□□ 2.06
UPF3A-202ENST00000375299 RSPH4AQ5TD94 716 aa27.91■■■□□ 2.06
UPF3A-202ENST00000375299 PRDM15P57071 1507 aaPredicted RBP27.9■■■□□ 2.06
UPF3A-202ENST00000375299 CRBNQ96SW2 442 aa27.9■■■□□ 2.06
UPF3A-202ENST00000375299 CHD1O14646 1710 aa27.89■■■□□ 2.05
UPF3A-202ENST00000375299 DDRGK1Q96HY6 314 aa27.88■■■□□ 2.05
UPF3A-202ENST00000375299 NBPF1Q3BBV0 1214 aa27.86■■■□□ 2.05
UPF3A-202ENST00000375299 CC2D1BQ5T0F9 858 aaKnown RBP27.86■■■□□ 2.05
UPF3A-202ENST00000375299 DISP3Q9P2K9 1392 aa27.86■■■□□ 2.05
UPF3A-202ENST00000375299 SYCP2Q9BX26 1530 aa27.85■■■□□ 2.05
UPF3A-202ENST00000375299 TTC37Q6PGP7 1564 aa27.85■■■□□ 2.05
UPF3A-202ENST00000375299 A2MP01023 1474 aa27.85■■■□□ 2.05
UPF3A-202ENST00000375299 MYO5CQ9NQX4 1742 aa27.84■■■□□ 2.05
UPF3A-202ENST00000375299 SHROOM2Q13796 1616 aa27.84■■■□□ 2.05
UPF3A-202ENST00000375299 MAST1Q9Y2H9 1570 aa27.83■■■□□ 2.05
UPF3A-202ENST00000375299 EIF2AK4Q9P2K8 1649 aaKnown RBP27.83■■■□□ 2.05
UPF3A-202ENST00000375299 IL27Q8NEV9 243 aa27.82■■■□□ 2.04
UPF3A-202ENST00000375299 TESK2Q96S53 571 aa27.82■■■□□ 2.04
UPF3A-202ENST00000375299 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.82■■■□□ 2.04
UPF3A-202ENST00000375299 UNC13BO14795 1591 aa27.82■■■□□ 2.04
UPF3A-202ENST00000375299 ERBINQ96RT1 1412 aa27.82■■■□□ 2.04
UPF3A-202ENST00000375299 ARHGAP5Q13017 1502 aa27.81■■■□□ 2.04
UPF3A-202ENST00000375299 PANK3Q9H999 370 aa27.8■■■□□ 2.04
UPF3A-202ENST00000375299 SKAP1Q86WV1 359 aa27.8■■■□□ 2.04
UPF3A-202ENST00000375299 PLA2R1Q13018 1463 aa27.79■■■□□ 2.04
UPF3A-202ENST00000375299 RGL3Q3MIN7 710 aa27.79■■■□□ 2.04
UPF3A-202ENST00000375299 KDM2BQ8NHM5 1336 aa27.77■■■□□ 2.04
UPF3A-202ENST00000375299 TMF1P82094 1093 aa27.74■■■□□ 2.03
UPF3A-202ENST00000375299 ABCC2Q92887 1545 aa27.74■■■□□ 2.03
UPF3A-202ENST00000375299 C20orf194Q5TEA3 1177 aa27.74■■■□□ 2.03
UPF3A-202ENST00000375299 PLXNC1O60486 1568 aa27.73■■■□□ 2.03
UPF3A-202ENST00000375299 ERCC6L2Q5T890 1561 aa27.73■■■□□ 2.03
UPF3A-202ENST00000375299 IQGAP3Q86VI3 1631 aa27.72■■■□□ 2.03
UPF3A-202ENST00000375299 RNF17Q9BXT8 1623 aaKnown RBP27.72■■■□□ 2.03
UPF3A-202ENST00000375299 CENPQQ7L2Z9 268 aaPredicted RBP27.71■■■□□ 2.03
UPF3A-202ENST00000375299 ADAMTS8Q9UP79 889 aa27.69■■■□□ 2.02
UPF3A-202ENST00000375299 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.68■■■□□ 2.025e-8■■■■□ 20.3
UPF3A-202ENST00000375299 ANO8Q9HCE9 1232 aaPredicted RBP27.66■■■□□ 2.02
UPF3A-202ENST00000375299 PLEKHH1Q9ULM0 1364 aa27.66■■■□□ 2.02
UPF3A-202ENST00000375299 DUSP27Q5VZP5 1158 aa27.65■■■□□ 2.02
UPF3A-202ENST00000375299 NFKBIBQ15653 356 aa27.65■■■□□ 2.02
UPF3A-202ENST00000375299 DUOX2Q9NRD8 1548 aa27.64■■■□□ 2.02
UPF3A-202ENST00000375299 RTN4Q9NQC3 1192 aaKnown RBP27.64■■■□□ 2.02
UPF3A-202ENST00000375299 CLASP1Q7Z460 1538 aa27.63■■■□□ 2.01
UPF3A-202ENST00000375299 GSE1Q14687 1217 aa27.63■■■□□ 2.01
UPF3A-202ENST00000375299 FAM161AQ3B820 660 aa27.63■■■□□ 2.01
UPF3A-202ENST00000375299 ATP10AO60312 1499 aa27.63■■■□□ 2.01
UPF3A-202ENST00000375299 MAGI2Q86UL8 1455 aa27.62■■■□□ 2.01
UPF3A-202ENST00000375299 WDR7Q9Y4E6 1490 aa27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms