RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 NUTM2DQ5VT03 806 aaPredicted RBP13.69□□□□□ -0.22
CLIP1-203ENST00000361654 TCEAL9Q9UHQ7 104 aa13.69□□□□□ -0.22
CLIP1-203ENST00000361654 WASHC2AQ641Q2 1341 aa13.69□□□□□ -0.22
CLIP1-203ENST00000361654 SETD5Q9C0A6 1442 aa13.68□□□□□ -0.22
CLIP1-203ENST00000361654 LRRFIP1Q32MZ4 808 aaKnown RBP13.68□□□□□ -0.22
CLIP1-203ENST00000361654 SMARCA2P51531 1590 aa13.68□□□□□ -0.22
CLIP1-203ENST00000361654 TRIM6-TRIM34B2RNG4 842 aa13.68□□□□□ -0.22
CLIP1-203ENST00000361654 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.68□□□□□ -0.22
CLIP1-203ENST00000361654 TEFQ10587 303 aa13.68□□□□□ -0.22
CLIP1-203ENST00000361654 KLHL34Q8N239 644 aa13.68□□□□□ -0.22
CLIP1-203ENST00000361654 COG3Q96JB2 828 aa13.68□□□□□ -0.22
CLIP1-203ENST00000361654 NOP58Q9Y2X3 529 aaKnown RBP13.68□□□□□ -0.22
CLIP1-203ENST00000361654 UACAQ9BZF9 1416 aa13.67□□□□□ -0.22
CLIP1-203ENST00000361654 SMC4Q9NTJ3 1288 aa13.67□□□□□ -0.22
CLIP1-203ENST00000361654 MPHOSPH9Q99550 1183 aa13.67□□□□□ -0.22
CLIP1-203ENST00000361654 HSPA5P11021 654 aaKnown RBP13.66□□□□□ -0.22
CLIP1-203ENST00000361654 ATF3P18847 181 aa13.66□□□□□ -0.22
CLIP1-203ENST00000361654 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.66□□□□□ -0.22
CLIP1-203ENST00000361654 NEXNQ0ZGT2 675 aa13.66□□□□□ -0.22
CLIP1-203ENST00000361654 PMFBP1Q8TBY8 1022 aa13.65□□□□□ -0.22
CLIP1-203ENST00000361654 CSPP1Q1MSJ5 1256 aa13.65□□□□□ -0.22
CLIP1-203ENST00000361654 SYAP1Q96A49 352 aaPredicted RBP13.65□□□□□ -0.22
CLIP1-203ENST00000361654 PSME1Q06323 249 aa13.65□□□□□ -0.22
CLIP1-203ENST00000361654 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.65□□□□□ -0.22
CLIP1-203ENST00000361654 AKAP17AQ02040 695 aaKnown RBP13.64□□□□□ -0.23
CLIP1-203ENST00000361654 CCDC18Q5T9S5 1454 aa13.64□□□□□ -0.23
CLIP1-203ENST00000361654 GBP4Q96PP9 640 aa13.64□□□□□ -0.23
CLIP1-203ENST00000361654 SYTL4Q96C24 671 aaPredicted RBP13.64□□□□□ -0.23
CLIP1-203ENST00000361654 TRAK1Q9UPV9 953 aa13.63□□□□□ -0.23
CLIP1-203ENST00000361654 B4GALNT3Q6L9W6 998 aa13.63□□□□□ -0.23
CLIP1-203ENST00000361654 SF3B2Q13435 895 aaKnown RBP13.62□□□□□ -0.23
CLIP1-203ENST00000361654 CNKSR2Q8WXI2 1034 aa13.62□□□□□ -0.23
CLIP1-203ENST00000361654 SYNE3Q6ZMZ3 975 aa13.62□□□□□ -0.23
CLIP1-203ENST00000361654 MSNP26038 577 aaKnown RBP13.61□□□□□ -0.23
CLIP1-203ENST00000361654 ANO8Q9HCE9 1232 aaPredicted RBP13.61□□□□□ -0.23
CLIP1-203ENST00000361654 VPS37DQ86XT2 251 aa13.61□□□□□ -0.23
CLIP1-203ENST00000361654 EVC2Q86UK5 1308 aa13.61□□□□□ -0.23
CLIP1-203ENST00000361654 PTPRGP23470 1445 aa13.61□□□□□ -0.23
CLIP1-203ENST00000361654 CCER2I3L3R5 266 aa13.61□□□□□ -0.23
CLIP1-203ENST00000361654 FAM69CQ0P6D2 419 aa13.61□□□□□ -0.23
CLIP1-203ENST00000361654 NAP1L5Q96NT1 182 aaPredicted RBP13.59□□□□□ -0.23
CLIP1-203ENST00000361654 CADPSQ9ULU8 1353 aa13.59□□□□□ -0.23
CLIP1-203ENST00000361654 RAD21O60216 631 aa13.58□□□□□ -0.23
CLIP1-203ENST00000361654 CPLX2Q6PUV4 134 aaKnown RBP13.58□□□□□ -0.23
CLIP1-203ENST00000361654 SF3A1Q15459 793 aaKnown RBP13.58□□□□□ -0.24
CLIP1-203ENST00000361654 FBXW7Q969H0 707 aa13.58□□□□□ -0.24
CLIP1-203ENST00000361654 RBM33Q96EV2 1170 aaKnown RBP13.58□□□□□ -0.24
CLIP1-203ENST00000361654 KIF16BQ96L93 1317 aa13.58□□□□□ -0.24
CLIP1-203ENST00000361654 DDX58O95786 925 aaKnown RBP13.58□□□□□ -0.24
CLIP1-203ENST00000361654 A0A0U1RQG5 324 aaPredicted RBP13.57□□□□□ -0.24
CLIP1-203ENST00000361654 RCAN3Q9UKA8 241 aa13.57□□□□□ -0.24
CLIP1-203ENST00000361654 TCERG1O14776 1098 aaKnown RBP13.57□□□□□ -0.24
CLIP1-203ENST00000361654 PDE4CQ08493 712 aa13.56□□□□□ -0.24
CLIP1-203ENST00000361654 USP35Q9P2H5 1018 aa13.56□□□□□ -0.24
CLIP1-203ENST00000361654 TPM3P06753 285 aa13.56□□□□□ -0.24
CLIP1-203ENST00000361654 SPRYD3Q8NCJ5 442 aa13.56□□□□□ -0.24
CLIP1-203ENST00000361654 RAPGEF4Q8WZA2 1011 aa13.56□□□□□ -0.24
CLIP1-203ENST00000361654 CREBRFQ8IUR6 639 aa13.56□□□□□ -0.24
CLIP1-203ENST00000361654 CGNL1Q0VF96 1302 aa13.56□□□□□ -0.24
CLIP1-203ENST00000361654 CENPJQ9HC77 1338 aaPredicted RBP13.55□□□□□ -0.24
CLIP1-203ENST00000361654 VPS8Q8N3P4 1428 aa13.54□□□□□ -0.24
CLIP1-203ENST00000361654 TPM2P07951 284 aa13.54□□□□□ -0.24
CLIP1-203ENST00000361654 C9orf78Q9NZ63 289 aaPredicted RBP13.54□□□□□ -0.24
CLIP1-203ENST00000361654 PHLDB1Q86UU1 1377 aa13.54□□□□□ -0.24
CLIP1-203ENST00000361654 CCDC144AA2RUR9 1427 aa13.54□□□□□ -0.24
CLIP1-203ENST00000361654 DHX16O60231 1041 aaKnown RBP13.53□□□□□ -0.24
CLIP1-203ENST00000361654 NLRP13Q86W25 1043 aa13.53□□□□□ -0.24
CLIP1-203ENST00000361654 NGEFQ8N5V2 710 aa13.53□□□□□ -0.24
CLIP1-203ENST00000361654 CCDC43Q96MW1 224 aaKnown RBP13.53□□□□□ -0.24
CLIP1-203ENST00000361654 CCDC47Q96A33 483 aaKnown RBP13.53□□□□□ -0.24
CLIP1-203ENST00000361654 TPD52L1Q16890 204 aaPredicted RBP13.52□□□□□ -0.24
CLIP1-203ENST00000361654 TSR1Q2NL82 804 aaKnown RBP13.52□□□□□ -0.24
CLIP1-203ENST00000361654 ST18O60284 1047 aa13.52□□□□□ -0.25
CLIP1-203ENST00000361654 MINK1Q8N4C8 1332 aaPredicted RBP13.51□□□□□ -0.25
CLIP1-203ENST00000361654 FAM184AQ8NB25 1140 aa13.51□□□□□ -0.25
CLIP1-203ENST00000361654 H3BQV1 296 aa13.51□□□□□ -0.25
CLIP1-203ENST00000361654 IFFO2Q5TF58 517 aa13.51□□□□□ -0.25
CLIP1-203ENST00000361654 WWC1Q8IX03 1113 aa13.51□□□□□ -0.25
CLIP1-203ENST00000361654 HMGB2P26583 209 aaKnown RBP13.5□□□□□ -0.25
CLIP1-203ENST00000361654 PDE3BQ13370 1112 aa13.5□□□□□ -0.25
CLIP1-203ENST00000361654 RAPGEF2Q9Y4G8 1499 aa13.5□□□□□ -0.25
CLIP1-203ENST00000361654 EIF2S2P20042 333 aaKnown RBP13.5□□□□□ -0.25
CLIP1-203ENST00000361654 RUFY2Q8WXA3 655 aa13.5□□□□□ -0.25
CLIP1-203ENST00000361654 TRIM29Q14134 588 aa13.5□□□□□ -0.25
CLIP1-203ENST00000361654 PES1O00541 588 aaKnown RBP13.49□□□□□ -0.25
CLIP1-203ENST00000361654 CLUAP1Q96AJ1 413 aa13.49□□□□□ -0.25
CLIP1-203ENST00000361654 ABCC8Q09428 1581 aa13.49□□□□□ -0.25
CLIP1-203ENST00000361654 CCDC146Q8IYE0 955 aa13.49□□□□□ -0.25
CLIP1-203ENST00000361654 APPP05067 770 aa13.48□□□□□ -0.25
CLIP1-203ENST00000361654 MFAP1P55081 439 aaKnown RBP13.48□□□□□ -0.25
CLIP1-203ENST00000361654 TRDNQ13061 729 aa13.48□□□□□ -0.25
CLIP1-203ENST00000361654 NLRP2Q9NX02 1062 aa13.48□□□□□ -0.25
CLIP1-203ENST00000361654 DIAPH3Q9NSV4 1193 aa13.48□□□□□ -0.25
CLIP1-203ENST00000361654 R3HCC1Q9Y3T6 440 aaKnown RBP13.48□□□□□ -0.25
CLIP1-203ENST00000361654 CCAR1Q8IX12 1150 aaKnown RBP13.48□□□□□ -0.25
CLIP1-203ENST00000361654 GOLGA6L1Q8N7Z2 621 aa13.48□□□□□ -0.25
CLIP1-203ENST00000361654 TPM1P09493 284 aa13.47□□□□□ -0.25
CLIP1-203ENST00000361654 AMER1Q5JTC6 1135 aaPredicted RBP13.47□□□□□ -0.25
CLIP1-203ENST00000361654 PHF14O94880 888 aa13.46□□□□□ -0.25
CLIP1-203ENST00000361654 ERICH2A1L162 156 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms