RNA–Protein interactions for RNA: ENST00000309279.11

CHD6-201, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 1 (best) BASIC

Gene CHD6, Length 1,635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-201ENST00000309279 PLXNC1O60486 1568 aa12.39□□□□□ -0.43
CHD6-201ENST00000309279 PTPRKQ15262 1439 aa12.39□□□□□ -0.43
CHD6-201ENST00000309279 PLEKHG5O94827 1062 aa12.39□□□□□ -0.43
CHD6-201ENST00000309279 C14orf37Q86TY3 774 aa12.39□□□□□ -0.43
CHD6-201ENST00000309279 SIGLEC1Q9BZZ2 1709 aa12.38□□□□□ -0.43
CHD6-201ENST00000309279 ADGRL2O95490 1459 aa12.38□□□□□ -0.43
CHD6-201ENST00000309279 NCOA1Q15788 1441 aa12.38□□□□□ -0.43
CHD6-201ENST00000309279 VSIG10Q8N0Z9 540 aa12.37□□□□□ -0.43
CHD6-201ENST00000309279 AGLP35573 1532 aa12.37□□□□□ -0.43
CHD6-201ENST00000309279 A2MP01023 1474 aa12.37□□□□□ -0.43
CHD6-201ENST00000309279 DHX29Q7Z478 1369 aaKnown RBP12.37□□□□□ -0.43
CHD6-201ENST00000309279 ANKRD30AQ9BXX3 1397 aa12.36□□□□□ -0.43
CHD6-201ENST00000309279 CHIC2Q9UKJ5 165 aa12.36□□□□□ -0.43
CHD6-201ENST00000309279 ROCK1Q13464 1354 aa12.35□□□□□ -0.43
CHD6-201ENST00000309279 KIF15Q9NS87 1388 aa12.34□□□□□ -0.43
CHD6-201ENST00000309279 DUOX2Q9NRD8 1548 aa12.34□□□□□ -0.43
CHD6-201ENST00000309279 RRP7BPQ9NSQ0 103 aa12.33□□□□□ -0.43
CHD6-201ENST00000309279 BCORL1Q5H9F3 1711 aa12.33□□□□□ -0.44
CHD6-201ENST00000309279 ITGAEP38570 1179 aa12.33□□□□□ -0.44
CHD6-201ENST00000309279 ARID4BQ4LE39 1312 aaPredicted RBP12.32□□□□□ -0.44
CHD6-201ENST00000309279 ERBINQ96RT1 1412 aa12.31□□□□□ -0.44
CHD6-201ENST00000309279 EIF2AK4Q9P2K8 1649 aaKnown RBP12.31□□□□□ -0.44
CHD6-201ENST00000309279 ADAMTSL3P82987 1691 aa12.3□□□□□ -0.44
CHD6-201ENST00000309279 KDM4FA0A1W2PPD8 638 aa12.29□□□□□ -0.44
CHD6-201ENST00000309279 KIF3BO15066 747 aa12.29□□□□□ -0.44
CHD6-201ENST00000309279 ANKRD50Q9ULJ7 1429 aa12.29□□□□□ -0.44
CHD6-201ENST00000309279 PPP6R1Q9UPN7 881 aa12.28□□□□□ -0.44
CHD6-201ENST00000309279 HFM1A2PYH4 1435 aa12.27□□□□□ -0.44
CHD6-201ENST00000309279 MLECQ14165 292 aa12.27□□□□□ -0.44
CHD6-201ENST00000309279 RNF17Q9BXT8 1623 aaKnown RBP12.27□□□□□ -0.45
CHD6-201ENST00000309279 NAIPQ13075 1403 aa12.26□□□□□ -0.45
CHD6-201ENST00000309279 ZBTB22O15209 634 aa12.26□□□□□ -0.45
CHD6-201ENST00000309279 TRIM26Q12899 539 aaPredicted RBP12.26□□□□□ -0.45
CHD6-201ENST00000309279 GGT6Q6P531 493 aa12.26□□□□□ -0.45
CHD6-201ENST00000309279 DEPDC5O75140 1603 aa12.25□□□□□ -0.45
CHD6-201ENST00000309279 GCC2Q8IWJ2 1684 aa12.25□□□□□ -0.45
CHD6-201ENST00000309279 MROH1Q8NDA8 1641 aa12.24□□□□□ -0.45
CHD6-201ENST00000309279 MADDQ8WXG6 1647 aa12.24□□□□□ -0.45
CHD6-201ENST00000309279 FER1L4A9Z1Z3 1794 aa12.24□□□□□ -0.45
CHD6-201ENST00000309279 FAM135AQ9P2D6 1515 aa12.24□□□□□ -0.45
CHD6-201ENST00000309279 PRDM15P57071 1507 aaPredicted RBP12.23□□□□□ -0.45
CHD6-201ENST00000309279 CNTLNQ9NXG0 1405 aa12.22□□□□□ -0.45
CHD6-201ENST00000309279 KDM5DQ9BY66 1539 aa12.21□□□□□ -0.45
CHD6-201ENST00000309279 VWDEQ8N2E2 1590 aa12.21□□□□□ -0.46
CHD6-201ENST00000309279 MROH2AA6NES4 1674 aa12.2□□□□□ -0.46
CHD6-201ENST00000309279 RIMS1Q86UR5 1692 aaKnown RBP12.2□□□□□ -0.46
CHD6-201ENST00000309279 UNC13BO14795 1591 aa12.2□□□□□ -0.46
CHD6-201ENST00000309279 PTPRMP28827 1452 aa12.2□□□□□ -0.46
CHD6-201ENST00000309279 WASHC2CQ9Y4E1 1318 aa12.2□□□□□ -0.46
CHD6-201ENST00000309279 CLTCQ00610 1675 aaKnown RBP12.2□□□□□ -0.46
CHD6-201ENST00000309279 ZC3H13Q5T200 1668 aaKnown RBP12.2□□□□□ -0.46
CHD6-201ENST00000309279 ESF1Q9H501 851 aaKnown RBP12.19□□□□□ -0.46
CHD6-201ENST00000309279 ABCC3O15438 1527 aa12.19□□□□□ -0.46
CHD6-201ENST00000309279 SETD5Q9C0A6 1442 aa12.19□□□□□ -0.46
CHD6-201ENST00000309279 ZMYM3Q14202 1370 aa12.19□□□□□ -0.46
CHD6-201ENST00000309279 KANK1Q14678 1352 aa12.18□□□□□ -0.46
CHD6-201ENST00000309279 LMTK2Q8IWU2 1503 aa12.18□□□□□ -0.46
CHD6-201ENST00000309279 ACIN1Q9UKV3 1341 aaKnown RBP12.17□□□□□ -0.46
CHD6-201ENST00000309279 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.17□□□□□ -0.462e-7■■□□□ 13
CHD6-201ENST00000309279 CEP152O94986 1710 aa12.17□□□□□ -0.46
CHD6-201ENST00000309279 C3P01024 1663 aa12.17□□□□□ -0.46
CHD6-201ENST00000309279 HRCP23327 699 aa12.16□□□□□ -0.46
CHD6-201ENST00000309279 KDM2AQ9Y2K7 1162 aa12.16□□□□□ -0.46
CHD6-201ENST00000309279 IQGAP3Q86VI3 1631 aa12.16□□□□□ -0.46
CHD6-201ENST00000309279 NUP155O75694 1391 aa12.16□□□□□ -0.46
CHD6-201ENST00000309279 ARHGAP31Q2M1Z3 1444 aa12.15□□□□□ -0.46
CHD6-201ENST00000309279 SETD1BQ9UPS6 1966 aaKnown RBP12.15□□□□□ -0.46
CHD6-201ENST00000309279 CAMSAP1Q5T5Y3 1602 aa12.15□□□□□ -0.47
CHD6-201ENST00000309279 CEBPAP49715 358 aaPredicted RBP12.15□□□□□ -0.47
CHD6-201ENST00000309279 RAB3GAP2Q9H2M9 1393 aa12.14□□□□□ -0.47
CHD6-201ENST00000309279 PZPP20742 1482 aa12.13□□□□□ -0.47
CHD6-201ENST00000309279 TET3O43151 1660 aa12.13□□□□□ -0.47
CHD6-201ENST00000309279 NPATQ14207 1427 aa12.12□□□□□ -0.47
CHD6-201ENST00000309279 EFCAB6Q5THR3 1501 aa12.12□□□□□ -0.47
CHD6-201ENST00000309279 CFAP65Q6ZU64 1925 aaKnown RBP12.11□□□□□ -0.47
CHD6-201ENST00000309279 RPRD2Q5VT52 1461 aaKnown RBP12.11□□□□□ -0.47
CHD6-201ENST00000309279 TRIM52Q96A61 297 aa12.1□□□□□ -0.47
CHD6-201ENST00000309279 FBXO31Q5XUX0 539 aaPredicted RBP12.09□□□□□ -0.47
CHD6-201ENST00000309279 E9PCH4 1651 aa12.09□□□□□ -0.47
CHD6-201ENST00000309279 SPATA31D1Q6ZQQ2 1576 aa12.09□□□□□ -0.47
CHD6-201ENST00000309279 PREX1Q8TCU6 1659 aa12.08□□□□□ -0.48
CHD6-201ENST00000309279 ERVK-7P63135 1459 aa12.07□□□□□ -0.48
CHD6-201ENST00000309279 NOS1P29475 1434 aa12.07□□□□□ -0.48
CHD6-201ENST00000309279 MPHOSPH9Q99550 1183 aa12.07□□□□□ -0.48
CHD6-201ENST00000309279 BCL11AQ9H165 835 aa12.07□□□□□ -0.48
CHD6-201ENST00000309279 TNRQ92752 1358 aa12.06□□□□□ -0.48
CHD6-201ENST00000309279 PKD2Q13563 968 aa12.04□□□□□ -0.48
CHD6-201ENST00000309279 FKBP8Q14318 412 aa12.04□□□□□ -0.48
CHD6-201ENST00000309279 PCGF6Q9BYE7 350 aa12.04□□□□□ -0.48
CHD6-201ENST00000309279 PTPRTO14522 1441 aa12.04□□□□□ -0.48
CHD6-201ENST00000309279 NLRP1Q9C000 1473 aa12.03□□□□□ -0.48
CHD6-201ENST00000309279 SYNMO15061 1565 aa12.03□□□□□ -0.48
CHD6-201ENST00000309279 MYO3AQ8NEV4 1616 aa12.03□□□□□ -0.48
CHD6-201ENST00000309279 SLC52A1Q9NWF4 448 aa12.03□□□□□ -0.48
CHD6-201ENST00000309279 UHRF1BP1Q6BDS2 1440 aa12.03□□□□□ -0.48
CHD6-201ENST00000309279 SPHKAPQ2M3C7 1700 aa12.02□□□□□ -0.48
CHD6-201ENST00000309279 LMTK3Q96Q04 1460 aa12.02□□□□□ -0.49
CHD6-201ENST00000309279 ZNF142P52746 1687 aaPredicted RBP12.02□□□□□ -0.49
CHD6-201ENST00000309279 PLA2R1Q13018 1463 aa12.01□□□□□ -0.49
CHD6-201ENST00000309279 PIK3C2BO00750 1634 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms