RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 NPATQ14207 1427 aa35.49■■■■□ 3.27
LSM4-201ENST00000252816 DUOX2Q9NRD8 1548 aa35.49■■■■□ 3.27
LSM4-201ENST00000252816 RRP7BPQ9NSQ0 103 aa35.48■■■■□ 3.27
LSM4-201ENST00000252816 CHIC2Q9UKJ5 165 aa35.47■■■■□ 3.27
LSM4-201ENST00000252816 PTPRKQ15262 1439 aa35.46■■■■□ 3.27
LSM4-201ENST00000252816 KDM5DQ9BY66 1539 aa35.45■■■■□ 3.27
LSM4-201ENST00000252816 RNF17Q9BXT8 1623 aaKnown RBP35.45■■■■□ 3.27
LSM4-201ENST00000252816 EIF2AK4Q9P2K8 1649 aaKnown RBP35.45■■■■□ 3.27
LSM4-201ENST00000252816 FAM135AQ9P2D6 1515 aa35.44■■■■□ 3.26
LSM4-201ENST00000252816 WASHC2CQ9Y4E1 1318 aa35.43■■■■□ 3.26
LSM4-201ENST00000252816 ANKRD30AQ9BXX3 1397 aa35.39■■■■□ 3.26
LSM4-201ENST00000252816 NCOA1Q15788 1441 aa35.39■■■■□ 3.26
LSM4-201ENST00000252816 MROH1Q8NDA8 1641 aa35.38■■■■□ 3.25
LSM4-201ENST00000252816 ERBINQ96RT1 1412 aa35.38■■■■□ 3.25
LSM4-201ENST00000252816 ADGRL2O95490 1459 aa35.35■■■■□ 3.25
LSM4-201ENST00000252816 ABCC3O15438 1527 aa35.34■■■■□ 3.25
LSM4-201ENST00000252816 PZPP20742 1482 aa35.34■■■■□ 3.25
LSM4-201ENST00000252816 FBXO31Q5XUX0 539 aaPredicted RBP35.33■■■■□ 3.25
LSM4-201ENST00000252816 MYO3AQ8NEV4 1616 aa35.29■■■■□ 3.24
LSM4-201ENST00000252816 ZC3H13Q5T200 1668 aaKnown RBP35.27■■■■□ 3.24
LSM4-201ENST00000252816 STRCQ7RTU9 1775 aa35.26■■■■□ 3.24
LSM4-201ENST00000252816 PRDM15P57071 1507 aaPredicted RBP35.26■■■■□ 3.23
LSM4-201ENST00000252816 TNRQ92752 1358 aa35.24■■■■□ 3.23
LSM4-201ENST00000252816 CEP170BQ9Y4F5 1589 aaPredicted RBP35.22■■■■□ 3.23
LSM4-201ENST00000252816 DEPDC5O75140 1603 aa35.22■■■■□ 3.23
LSM4-201ENST00000252816 ZNF142P52746 1687 aaPredicted RBP35.22■■■■□ 3.23
LSM4-201ENST00000252816 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.22■■■■□ 3.232e-7■□□□□ 8
LSM4-201ENST00000252816 CEP152O94986 1710 aa35.22■■■■□ 3.23
LSM4-201ENST00000252816 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.22■■■■□ 3.231e-6■■■■■ 37.1
LSM4-201ENST00000252816 CAMSAP1Q5T5Y3 1602 aa35.18■■■■□ 3.22
LSM4-201ENST00000252816 ANKRD50Q9ULJ7 1429 aa35.17■■■■□ 3.22
LSM4-201ENST00000252816 A2ML1A8K2U0 1454 aa35.16■■■■□ 3.22
LSM4-201ENST00000252816 ITGAEP38570 1179 aa35.16■■■■□ 3.22
LSM4-201ENST00000252816 ROCK1Q13464 1354 aa35.14■■■■□ 3.22
LSM4-201ENST00000252816 RRBP1Q9P2E9 1410 aaKnown RBP35.14■■■■□ 3.22
LSM4-201ENST00000252816 KANK1Q14678 1352 aa35.13■■■■□ 3.21
LSM4-201ENST00000252816 ERVK-7P63135 1459 aa35.12■■■■□ 3.21
LSM4-201ENST00000252816 DMRT2Q9Y5R5 561 aa35.12■■■■□ 3.21
LSM4-201ENST00000252816 SPATA31D1Q6ZQQ2 1576 aa35.12■■■■□ 3.21
LSM4-201ENST00000252816 VWDEQ8N2E2 1590 aa35.11■■■■□ 3.21
LSM4-201ENST00000252816 ARHGAP31Q2M1Z3 1444 aa35.09■■■■□ 3.21
LSM4-201ENST00000252816 PLA2R1Q13018 1463 aa35.07■■■■□ 3.2
LSM4-201ENST00000252816 NLRP1Q9C000 1473 aa35.07■■■■□ 3.2
LSM4-201ENST00000252816 NCKAP5LQ9HCH0 1330 aa35.06■■■■□ 3.2
LSM4-201ENST00000252816 PTPRTO14522 1441 aa35.06■■■■□ 3.2
LSM4-201ENST00000252816 LMTK2Q8IWU2 1503 aa35.06■■■■□ 3.2
LSM4-201ENST00000252816 CFAP65Q6ZU64 1925 aaKnown RBP35.04■■■■□ 3.2
LSM4-201ENST00000252816 PKD2Q13563 968 aa34.99■■■■□ 3.19
LSM4-201ENST00000252816 ILDR1Q86SU0 546 aaPredicted RBP34.98■■■■□ 3.19
LSM4-201ENST00000252816 UGGT1Q9NYU2 1555 aa34.97■■■■□ 3.19
LSM4-201ENST00000252816 EFCAB6Q5THR3 1501 aa34.95■■■■□ 3.19
LSM4-201ENST00000252816 UNC13BO14795 1591 aa34.95■■■■□ 3.18
LSM4-201ENST00000252816 THEMISQ8N1K5 641 aaPredicted RBP34.94■■■■□ 3.18
LSM4-201ENST00000252816 CERKQ8TCT0 537 aa34.87■■■■□ 3.17
LSM4-201ENST00000252816 NOS1P29475 1434 aa34.86■■■■□ 3.17
LSM4-201ENST00000252816 NEURL4Q96JN8 1562 aa34.85■■■■□ 3.17
LSM4-201ENST00000252816 TET3O43151 1660 aa34.85■■■■□ 3.17
LSM4-201ENST00000252816 ANKLE2Q86XL3 938 aa34.84■■■■□ 3.17
LSM4-201ENST00000252816 UBR1Q8IWV7 1749 aa34.84■■■■□ 3.17
LSM4-201ENST00000252816 SYNMO15061 1565 aa34.83■■■■□ 3.17
LSM4-201ENST00000252816 POLR1AO95602 1720 aaPredicted RBP34.83■■■■□ 3.17
LSM4-201ENST00000252816 RPRD2Q5VT52 1461 aaKnown RBP34.82■■■■□ 3.16
LSM4-201ENST00000252816 FBXO41Q8TF61 875 aa34.81■■■■□ 3.16
LSM4-201ENST00000252816 NUP155O75694 1391 aa34.81■■■■□ 3.16
LSM4-201ENST00000252816 NAIPQ13075 1403 aa34.81■■■■□ 3.16
LSM4-201ENST00000252816 IDI1Q13907 227 aa34.8■■■■□ 3.16
LSM4-201ENST00000252816 IQGAP3Q86VI3 1631 aa34.8■■■■□ 3.16
LSM4-201ENST00000252816 PIK3C2BO00750 1634 aa34.79■■■■□ 3.16
LSM4-201ENST00000252816 LTBP4Q8N2S1 1624 aa34.79■■■■□ 3.16
LSM4-201ENST00000252816 GCC2Q8IWJ2 1684 aa34.78■■■■□ 3.16
LSM4-201ENST00000252816 ZNF335Q9H4Z2 1342 aaPredicted RBP34.76■■■■□ 3.15
LSM4-201ENST00000252816 MED14O60244 1454 aa34.74■■■■□ 3.15
LSM4-201ENST00000252816 E9PCH4 1651 aa34.73■■■■□ 3.15
LSM4-201ENST00000252816 ARHGAP23Q9P227 1491 aa34.72■■■■□ 3.15
LSM4-201ENST00000252816 NPHP4O75161 1426 aaPredicted RBP34.72■■■■□ 3.15
LSM4-201ENST00000252816 SLC52A1Q9NWF4 448 aa34.71■■■■□ 3.15
LSM4-201ENST00000252816 HFM1A2PYH4 1435 aa34.71■■■■□ 3.15
LSM4-201ENST00000252816 SLIT1O75093 1534 aa34.71■■■■□ 3.15
LSM4-201ENST00000252816 STAG3Q9UJ98 1225 aa34.7■■■■□ 3.15
LSM4-201ENST00000252816 LTKP29376 864 aa34.69■■■■□ 3.14
LSM4-201ENST00000252816 KDM5AP29375 1690 aaKnown RBP34.66■■■■□ 3.14
LSM4-201ENST00000252816 SCAF11Q99590 1463 aaKnown RBP34.66■■■■□ 3.14
LSM4-201ENST00000252816 TMEM2Q9UHN6 1383 aa34.66■■■■□ 3.14
LSM4-201ENST00000252816 TXNDC2Q86VQ3 553 aa34.65■■■■□ 3.14
LSM4-201ENST00000252816 IQGAP1P46940 1657 aa34.64■■■■□ 3.14
LSM4-201ENST00000252816 ADGRB3O60242 1522 aa34.64■■■■□ 3.14
LSM4-201ENST00000252816 EID1Q9Y6B2 187 aa34.59■■■■□ 3.13
LSM4-201ENST00000252816 IQSEC2Q5JU85 1478 aa34.53■■■■□ 3.12
LSM4-201ENST00000252816 TMEM131LA2VDJ0 1609 aa34.53■■■■□ 3.12
LSM4-201ENST00000252816 TRIM52Q96A61 297 aa34.52■■■■□ 3.12
LSM4-201ENST00000252816 MYO5BQ9ULV0 1848 aa34.5■■■■□ 3.11
LSM4-201ENST00000252816 CHGAP10645 457 aaKnown RBP34.48■■■■□ 3.11
LSM4-201ENST00000252816 CPS1P31327 1500 aa34.47■■■■□ 3.11
LSM4-201ENST00000252816 ZFYVE9O95405 1425 aa34.47■■■■□ 3.11
LSM4-201ENST00000252816 SPHKAPQ2M3C7 1700 aa34.46■■■■□ 3.11
LSM4-201ENST00000252816 RIMS2Q9UQ26 1411 aa34.44■■■■□ 3.1
LSM4-201ENST00000252816 STRCP1A6NGW2 1772 aa34.41■■■■□ 3.1
LSM4-201ENST00000252816 SLC4A1APQ9BWU0 796 aaKnown RBP34.4■■■■□ 3.1
LSM4-201ENST00000252816 TRPM2O94759 1503 aa34.36■■■■□ 3.09
LSM4-201ENST00000252816 SLC26A8Q96RN1 970 aa34.36■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms