RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 NCOA1Q15788 1441 aa16.63■□□□□ 0.25
VPS50-201ENST00000251739 NCOA2Q15596 1464 aa16.63■□□□□ 0.25
VPS50-201ENST00000251739 CERKQ8TCT0 537 aa16.63■□□□□ 0.25
VPS50-201ENST00000251739 ZNF644Q9H582 1327 aaPredicted RBP16.63■□□□□ 0.25
VPS50-201ENST00000251739 ESF1Q9H501 851 aaKnown RBP16.61■□□□□ 0.25
VPS50-201ENST00000251739 ZMYM3Q14202 1370 aa16.61■□□□□ 0.25
VPS50-201ENST00000251739 CAMSAP2Q08AD1 1489 aa16.61■□□□□ 0.25
VPS50-201ENST00000251739 C1QBPQ07021 282 aaKnown RBP16.6■□□□□ 0.25
VPS50-201ENST00000251739 PTPRKQ15262 1439 aa16.6■□□□□ 0.25
VPS50-201ENST00000251739 CCDC141Q6ZP82 1450 aa16.6■□□□□ 0.25
VPS50-201ENST00000251739 ARHGEF5Q12774 1597 aa16.6■□□□□ 0.25
VPS50-201ENST00000251739 CAMSAP1Q5T5Y3 1602 aa16.59■□□□□ 0.25
VPS50-201ENST00000251739 LTBP4Q8N2S1 1624 aa16.59■□□□□ 0.25
VPS50-201ENST00000251739 FAM135AQ9P2D6 1515 aa16.59■□□□□ 0.25
VPS50-201ENST00000251739 CEP170BQ9Y4F5 1589 aaPredicted RBP16.59■□□□□ 0.25
VPS50-201ENST00000251739 VPS8Q8N3P4 1428 aa16.57■□□□□ 0.24
VPS50-201ENST00000251739 PLA2R1Q13018 1463 aa16.56■□□□□ 0.24
VPS50-201ENST00000251739 DHX29Q7Z478 1369 aaKnown RBP16.55■□□□□ 0.24
VPS50-201ENST00000251739 MAP3K1Q13233 1512 aa16.55■□□□□ 0.24
VPS50-201ENST00000251739 LRRC9Q6ZRR7 1453 aa16.54■□□□□ 0.24
VPS50-201ENST00000251739 TCOF1Q13428 1488 aaKnown RBP16.54■□□□□ 0.24
VPS50-201ENST00000251739 SAMD1Q6SPF0 538 aaPredicted RBP16.53■□□□□ 0.24
VPS50-201ENST00000251739 IQSEC2Q5JU85 1478 aa16.53■□□□□ 0.24
VPS50-201ENST00000251739 MAST1Q9Y2H9 1570 aa16.52■□□□□ 0.24
VPS50-201ENST00000251739 KDM5DQ9BY66 1539 aa16.52■□□□□ 0.24
VPS50-201ENST00000251739 DNMT1P26358 1616 aaKnown RBP16.51■□□□□ 0.23
VPS50-201ENST00000251739 RNF17Q9BXT8 1623 aaKnown RBP16.51■□□□□ 0.23
VPS50-201ENST00000251739 A2ML1A8K2U0 1454 aa16.5■□□□□ 0.23
VPS50-201ENST00000251739 GGT6Q6P531 493 aa16.5■□□□□ 0.23
VPS50-201ENST00000251739 PZPP20742 1482 aa16.49■□□□□ 0.23
VPS50-201ENST00000251739 POLR1AO95602 1720 aaPredicted RBP16.48■□□□□ 0.23
VPS50-201ENST00000251739 RSPH4AQ5TD94 716 aa16.48■□□□□ 0.23
VPS50-201ENST00000251739 EIF2AK4Q9P2K8 1649 aaKnown RBP16.47■□□□□ 0.23
VPS50-201ENST00000251739 ZC3H13Q5T200 1668 aaKnown RBP16.46■□□□□ 0.23
VPS50-201ENST00000251739 NEURL4Q96JN8 1562 aa16.46■□□□□ 0.23
VPS50-201ENST00000251739 MROH1Q8NDA8 1641 aa16.45■□□□□ 0.22
VPS50-201ENST00000251739 MYOM3Q5VTT5 1437 aa16.45■□□□□ 0.22
VPS50-201ENST00000251739 ATXN8OSP0DMR3 200 aa16.44■□□□□ 0.22
VPS50-201ENST00000251739 MIA2Q96PC5 1412 aa16.44■□□□□ 0.22
VPS50-201ENST00000251739 NCKAP5LQ9HCH0 1330 aa16.44■□□□□ 0.22
VPS50-201ENST00000251739 CROCC2H7BZ55 1655 aa16.43■□□□□ 0.22
VPS50-201ENST00000251739 TNRQ92752 1358 aa16.43■□□□□ 0.22
VPS50-201ENST00000251739 LOC105371045A0A1W2PR82 267 aa16.43■□□□□ 0.22
VPS50-201ENST00000251739 KIF3BO15066 747 aa16.43■□□□□ 0.22
VPS50-201ENST00000251739 PKD2Q13563 968 aa16.43■□□□□ 0.22
VPS50-201ENST00000251739 ABCC3O15438 1527 aa16.42■□□□□ 0.22
VPS50-201ENST00000251739 APLP2Q06481 763 aa16.41■□□□□ 0.22
VPS50-201ENST00000251739 KANK4Q5T7N3 995 aaPredicted RBP16.41■□□□□ 0.22
VPS50-201ENST00000251739 NLRP1Q9C000 1473 aa16.4■□□□□ 0.22
VPS50-201ENST00000251739 SPATA31D1Q6ZQQ2 1576 aa16.39■□□□□ 0.21
VPS50-201ENST00000251739 ZNF335Q9H4Z2 1342 aaPredicted RBP16.39■□□□□ 0.21
VPS50-201ENST00000251739 CEP152O94986 1710 aa16.39■□□□□ 0.21
VPS50-201ENST00000251739 DEPDC5O75140 1603 aa16.38■□□□□ 0.21
VPS50-201ENST00000251739 SHANK2Q9UPX8 1470 aa16.38■□□□□ 0.21
VPS50-201ENST00000251739 FBXO31Q5XUX0 539 aaPredicted RBP16.38■□□□□ 0.21
VPS50-201ENST00000251739 DUOX2Q9NRD8 1548 aa16.37■□□□□ 0.21
VPS50-201ENST00000251739 TSPY4P0CV99 314 aa16.37■□□□□ 0.21
VPS50-201ENST00000251739 TSPY10P0CW01 314 aa16.37■□□□□ 0.21
VPS50-201ENST00000251739 PRDM15P57071 1507 aaPredicted RBP16.36■□□□□ 0.21
VPS50-201ENST00000251739 PTPN23Q9H3S7 1636 aa16.36■□□□□ 0.21
VPS50-201ENST00000251739 WASHC2CQ9Y4E1 1318 aa16.36■□□□□ 0.21
VPS50-201ENST00000251739 UGGT1Q9NYU2 1555 aa16.35■□□□□ 0.21
VPS50-201ENST00000251739 MED14O60244 1454 aa16.35■□□□□ 0.21
VPS50-201ENST00000251739 ERVK-7P63135 1459 aa16.35■□□□□ 0.21
VPS50-201ENST00000251739 VWDEQ8N2E2 1590 aa16.34■□□□□ 0.21
VPS50-201ENST00000251739 CPS1P31327 1500 aa16.32■□□□□ 0.2
VPS50-201ENST00000251739 IQGAP1P46940 1657 aa16.32■□□□□ 0.2
VPS50-201ENST00000251739 UBR1Q8IWV7 1749 aa16.32■□□□□ 0.2
VPS50-201ENST00000251739 CFAP65Q6ZU64 1925 aaKnown RBP16.31■□□□□ 0.2
VPS50-201ENST00000251739 ABCC5O15440 1437 aa16.31■□□□□ 0.2
VPS50-201ENST00000251739 SPINK5Q9NQ38 1064 aaPredicted RBP16.31■□□□□ 0.2
VPS50-201ENST00000251739 ATF5Q9Y2D1 282 aaPredicted RBP16.31■□□□□ 0.2
VPS50-201ENST00000251739 ERBINQ96RT1 1412 aa16.3■□□□□ 0.2
VPS50-201ENST00000251739 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.3■□□□□ 0.2
VPS50-201ENST00000251739 CACNB1Q02641 598 aaPredicted RBP16.3■□□□□ 0.2
VPS50-201ENST00000251739 FGD6Q6ZV73 1430 aa16.29■□□□□ 0.2
VPS50-201ENST00000251739 KIF15Q9NS87 1388 aa16.29■□□□□ 0.2
VPS50-201ENST00000251739 DAPK1P53355 1430 aa16.28■□□□□ 0.2
VPS50-201ENST00000251739 ARHGAP31Q2M1Z3 1444 aa16.28■□□□□ 0.2
VPS50-201ENST00000251739 STRCP1A6NGW2 1772 aa16.28■□□□□ 0.2
VPS50-201ENST00000251739 THEMISQ8N1K5 641 aaPredicted RBP16.27■□□□□ 0.2
VPS50-201ENST00000251739 NPHP4O75161 1426 aaPredicted RBP16.27■□□□□ 0.19
VPS50-201ENST00000251739 ALKQ9UM73 1620 aa16.26■□□□□ 0.19
VPS50-201ENST00000251739 DISP3Q9P2K9 1392 aa16.26■□□□□ 0.19
VPS50-201ENST00000251739 ARHGAP23Q9P227 1491 aa16.25■□□□□ 0.19
VPS50-201ENST00000251739 ANKLE2Q86XL3 938 aa16.25■□□□□ 0.19
VPS50-201ENST00000251739 LMTK2Q8IWU2 1503 aa16.24■□□□□ 0.19
VPS50-201ENST00000251739 KDM5AP29375 1690 aaKnown RBP16.24■□□□□ 0.19
VPS50-201ENST00000251739 UBAP1LF5GYI3 381 aa16.24■□□□□ 0.19
VPS50-201ENST00000251739 SYNMO15061 1565 aa16.24■□□□□ 0.19
VPS50-201ENST00000251739 SLIT1O75093 1534 aa16.24■□□□□ 0.19
VPS50-201ENST00000251739 PIK3C2BO00750 1634 aa16.22■□□□□ 0.19
VPS50-201ENST00000251739 ADGRL2O95490 1459 aa16.22■□□□□ 0.19
VPS50-201ENST00000251739 CAPN15O75808 1086 aa16.21■□□□□ 0.19
VPS50-201ENST00000251739 ILDR2Q71H61 639 aa16.2■□□□□ 0.18
VPS50-201ENST00000251739 SCAF11Q99590 1463 aaKnown RBP16.2■□□□□ 0.18
VPS50-201ENST00000251739 EFCAB6Q5THR3 1501 aa16.19■□□□□ 0.18
VPS50-201ENST00000251739 ZNF219Q9P2Y4 722 aaPredicted RBP16.19■□□□□ 0.18
VPS50-201ENST00000251739 LRRC7Q96NW7 1537 aa16.18■□□□□ 0.18
VPS50-201ENST00000251739 XIRP1Q702N8 1843 aaKnown RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms