RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 AEBP2Q6ZN18 517 aaPredicted RBP27.01■■□□□ 1.91
VPS50-201ENST00000251739 CHIC1Q5VXU3 224 aa26.41■■□□□ 1.82
VPS50-201ENST00000251739 NISCHQ9Y2I1 1504 aa26.17■■□□□ 1.78
VPS50-201ENST00000251739 CCDC180Q9P1Z9 1646 aa23.58■■□□□ 1.36
VPS50-201ENST00000251739 ABCC9O60706 1549 aa23.39■■□□□ 1.34
VPS50-201ENST00000251739 PHF23Q9BUL5 403 aaPredicted RBP23.22■■□□□ 1.31
VPS50-201ENST00000251739 SENP3Q9H4L4 574 aaPredicted RBP22.91■■□□□ 1.26
VPS50-201ENST00000251739 RB1CC1Q8TDY2 1594 aa22.34■■□□□ 1.17
VPS50-201ENST00000251739 NACADO15069 1562 aa22.21■■□□□ 1.15
VPS50-201ENST00000251739 MYO15BQ96JP2 1530 aa21.97■■□□□ 1.11
VPS50-201ENST00000251739 UNC13AQ9UPW8 1703 aa21.94■■□□□ 1.1
VPS50-201ENST00000251739 DNAJC5BQ9UF47 199 aa21.91■■□□□ 1.1
VPS50-201ENST00000251739 DCAF8L2P0C7V8 631 aa21.8■■□□□ 1.08
VPS50-201ENST00000251739 BICRAQ9NZM4 1560 aa21.76■■□□□ 1.07
VPS50-201ENST00000251739 ZCCHC6Q5VYS8 1495 aaKnown RBP21.73■■□□□ 1.07
VPS50-201ENST00000251739 PABPN1Q86U42 306 aaKnown RBP eCLIP21.69■■□□□ 1.06
VPS50-201ENST00000251739 DCAF1Q9Y4B6 1507 aa21.68■■□□□ 1.06
VPS50-201ENST00000251739 SHROOM4Q9ULL8 1493 aa21.48■■□□□ 1.03
VPS50-201ENST00000251739 PLPPR3Q6T4P5 718 aa21.44■■□□□ 1.02
VPS50-201ENST00000251739 SCRIBQ14160 1630 aa21.37■■□□□ 1.01
VPS50-201ENST00000251739 FOXD1Q16676 465 aa21.26■□□□□ 0.99
VPS50-201ENST00000251739 CC2D2AQ9P2K1 1620 aa21.2■□□□□ 0.98
VPS50-201ENST00000251739 EIF4G1Q04637 1599 aaKnown RBP21.18■□□□□ 0.98
VPS50-201ENST00000251739 CECR2Q9BXF3 1484 aa21.08■□□□□ 0.97
VPS50-201ENST00000251739 NCAPD3P42695 1498 aa20.49■□□□□ 0.87
VPS50-201ENST00000251739 PPP6R1Q9UPN7 881 aa20.47■□□□□ 0.87
VPS50-201ENST00000251739 SMARCA4P51532 1647 aa20.44■□□□□ 0.86
VPS50-201ENST00000251739 ADRA2BP18089 450 aa20.43■□□□□ 0.86
VPS50-201ENST00000251739 ATAD2BQ9ULI0 1458 aa20.41■□□□□ 0.86
VPS50-201ENST00000251739 HMGXB3Q12766 1538 aa20.39■□□□□ 0.85
VPS50-201ENST00000251739 SMARCA2P51531 1590 aa20.38■□□□□ 0.85
VPS50-201ENST00000251739 BAZ1AQ9NRL2 1556 aaPredicted RBP20.31■□□□□ 0.84
VPS50-201ENST00000251739 PEG3Q9GZU2 1588 aa20.29■□□□□ 0.84
VPS50-201ENST00000251739 CUX2O14529 1486 aa20.21■□□□□ 0.83
VPS50-201ENST00000251739 BAZ1BQ9UIG0 1483 aaKnown RBP20.19■□□□□ 0.82
VPS50-201ENST00000251739 ERCC6Q03468 1493 aa20.17■□□□□ 0.82
VPS50-201ENST00000251739 MROH2BQ7Z745 1585 aa20.16■□□□□ 0.82
VPS50-201ENST00000251739 NESP48681 1621 aa20.13■□□□□ 0.81
VPS50-201ENST00000251739 DNAJC5Q9H3Z4 198 aa20.11■□□□□ 0.81
VPS50-201ENST00000251739 LAMC3Q9Y6N6 1575 aa20.04■□□□□ 0.8
VPS50-201ENST00000251739 PIAS4Q8N2W9 510 aaPredicted RBP20.03■□□□□ 0.8
VPS50-201ENST00000251739 THOC2Q8NI27 1593 aaKnown RBP20.02■□□□□ 0.8
VPS50-201ENST00000251739 KIF21AQ7Z4S6 1674 aa19.95■□□□□ 0.78
VPS50-201ENST00000251739 WIZO95785 1651 aa19.92■□□□□ 0.78
VPS50-201ENST00000251739 PDS5BQ9NTI5 1447 aa19.85■□□□□ 0.77
VPS50-201ENST00000251739 CADPSQ9ULU8 1353 aa19.81■□□□□ 0.76
VPS50-201ENST00000251739 WDR62O43379 1518 aa19.72■□□□□ 0.75
VPS50-201ENST00000251739 RSF1Q96T23 1441 aaPredicted RBP19.72■□□□□ 0.75
VPS50-201ENST00000251739 MRC2Q9UBG0 1479 aa19.72■□□□□ 0.75
VPS50-201ENST00000251739 TOP2AP11388 1531 aaKnown RBP19.69■□□□□ 0.74
VPS50-201ENST00000251739 CFTRP13569 1480 aa19.64■□□□□ 0.73
VPS50-201ENST00000251739 CEP164Q9UPV0 1460 aa19.62■□□□□ 0.73
VPS50-201ENST00000251739 FANCD2Q9BXW9 1451 aa19.6■□□□□ 0.73
VPS50-201ENST00000251739 MSH5O43196 834 aa19.59■□□□□ 0.73
VPS50-201ENST00000251739 PRDM2Q13029 1718 aa19.56■□□□□ 0.72
VPS50-201ENST00000251739 URB2Q14146 1524 aaKnown RBP19.48■□□□□ 0.71
VPS50-201ENST00000251739 CCDC88BA6NC98 1476 aa19.41■□□□□ 0.7
VPS50-201ENST00000251739 TOPBP1Q92547 1522 aa19.25■□□□□ 0.67
VPS50-201ENST00000251739 IFT140Q96RY7 1462 aa19.23■□□□□ 0.67
VPS50-201ENST00000251739 DNMBPQ6XZF7 1577 aa19.22■□□□□ 0.67
VPS50-201ENST00000251739 ZNF608Q9ULD9 1512 aaPredicted RBP19.21■□□□□ 0.67
VPS50-201ENST00000251739 ABCC8Q09428 1581 aa19.19■□□□□ 0.66
VPS50-201ENST00000251739 EIF4G3O43432 1585 aaKnown RBP19.16■□□□□ 0.66
VPS50-201ENST00000251739 OSCARQ8IYS5 282 aa19.16■□□□□ 0.66
VPS50-201ENST00000251739 TARBP1Q13395 1621 aaKnown RBP19.14■□□□□ 0.66
VPS50-201ENST00000251739 TRIM41Q8WV44 630 aa19.11■□□□□ 0.65
VPS50-201ENST00000251739 POLA1P09884 1462 aaPredicted RBP19.07■□□□□ 0.64
VPS50-201ENST00000251739 RIMBP3CA6NJZ7 1639 aa19.05■□□□□ 0.64
VPS50-201ENST00000251739 RIMBP3BA6NNM3 1639 aa19.05■□□□□ 0.64
VPS50-201ENST00000251739 RIMBP3Q9UFD9 1639 aa19.05■□□□□ 0.64
VPS50-201ENST00000251739 CHD1O14646 1710 aa19.03■□□□□ 0.64
VPS50-201ENST00000251739 AQRO60306 1485 aaKnown RBP eCLIP18.99■□□□□ 0.63
VPS50-201ENST00000251739 ARHGEF11O15085 1522 aa18.98■□□□□ 0.63
VPS50-201ENST00000251739 WDR97A6NE52 1622 aa18.96■□□□□ 0.63
VPS50-201ENST00000251739 RAD54L2Q9Y4B4 1467 aa18.95■□□□□ 0.62
VPS50-201ENST00000251739 CUX1P39880 1505 aa18.95■□□□□ 0.62
VPS50-201ENST00000251739 FGD5Q6ZNL6 1462 aa18.93■□□□□ 0.62
VPS50-201ENST00000251739 SOGA1O94964 1423 aa18.9■□□□□ 0.62
VPS50-201ENST00000251739 PPP4R3CPQ6ZMV5 832 aa18.89■□□□□ 0.61
VPS50-201ENST00000251739 TDRD9Q8NDG6 1382 aaKnown RBP18.85■□□□□ 0.61
VPS50-201ENST00000251739 SNAPC4Q5SXM2 1469 aa18.84■□□□□ 0.61
VPS50-201ENST00000251739 MAGI1Q96QZ7 1491 aaPredicted RBP18.82■□□□□ 0.6
VPS50-201ENST00000251739 CLASP1Q7Z460 1538 aa18.81■□□□□ 0.6
VPS50-201ENST00000251739 ARAP1Q96P48 1450 aa18.8■□□□□ 0.6
VPS50-201ENST00000251739 PBRM1Q86U86 1689 aa18.79■□□□□ 0.6
VPS50-201ENST00000251739 GRIN2BQ13224 1484 aa18.78■□□□□ 0.6
VPS50-201ENST00000251739 ABCA5Q8WWZ7 1642 aa18.77■□□□□ 0.6
VPS50-201ENST00000251739 ABCA10Q8WWZ4 1543 aa18.74■□□□□ 0.59
VPS50-201ENST00000251739 SYNJ1O43426 1573 aa18.74■□□□□ 0.59
VPS50-201ENST00000251739 SYNJ2O15056 1496 aa18.74■□□□□ 0.59
VPS50-201ENST00000251739 FBLN2P98095 1184 aa18.73■□□□□ 0.59
VPS50-201ENST00000251739 GAPVD1Q14C86 1478 aa18.71■□□□□ 0.59
VPS50-201ENST00000251739 SCAF1Q9H7N4 1312 aaKnown RBP18.71■□□□□ 0.59
VPS50-201ENST00000251739 BIVM-ERCC5R4GMW8 1640 aa18.7■□□□□ 0.58
VPS50-201ENST00000251739 CYB5RLQ6IPT4 315 aa18.68■□□□□ 0.58
VPS50-201ENST00000251739 SUPT5HO00267 1087 aaKnown RBP18.67■□□□□ 0.58
VPS50-201ENST00000251739 TOP2BQ02880 1626 aa18.67■□□□□ 0.58
VPS50-201ENST00000251739 CHMP7Q8WUX9 453 aaPredicted RBP18.64■□□□□ 0.57
VPS50-201ENST00000251739 ADAMTS12P58397 1594 aa18.61■□□□□ 0.57
VPS50-201ENST00000251739 WRNQ14191 1432 aaPredicted RBP eCLIP18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms