RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKR1	YMR247C	ASP3-1	P0CZ17	362 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	URA4	P20051	364 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	ROX1	P25042	368 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	RAD57	P25301	460 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	ERG9	P29704	444 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	PRP21	P32524	280 aa	Predicted RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	TOA1	P32773	286 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	MCR1	P36060	302 aa	Known RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	DRE2	P36152	348 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	RIB5	P38145	238 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	FUI1	P38196	639 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	RRN10	P38204	145 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	IFA38	P38286	347 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	ARP1	P38696	384 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	AXL2	P38928	823 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	AFG3	P39925	761 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	0.82	□□□□□ -2.28	RIP-Chip
RKR1	YMR247C	BIO3	P50277	480 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	DSD1	P53095	428 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	LIF1	P53150	421 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	RSM27	P53305	110 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	DUG3	P53871	357 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	MSC1	Q03104	513 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	CSI1	Q04368	295 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	MFB1	Q04922	465 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	YMR034C	Q05131	434 aa	Predicted RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	YPR172W	Q06608	200 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	TRM8	Q12009	286 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	YPQ1	Q12010	308 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	DNA2	P38859	1522 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	ATP1	P07251	545 aa	Known RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	GDH1	P07262	454 aa	Known RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	RPS18A	P0CX55	146 aa	Known RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	RPS18B	P0CX56	146 aa	Predicted RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	FUR1	P18562	216 aa	Known RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	RBK1	P25332	333 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	AFG1	P32317	509 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	HMX1	P32339	317 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	TIF3	P34167	436 aa	Known RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	FRE2	P36033	711 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	COS9	P36034	407 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	GPI18	P38211	433 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	STB5	P38699	743 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	GND1	P38720	489 aa	Known RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	YHR218W	P38899	603 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	SPO22	P40511	975 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	CAK1	P43568	368 aa	Predicted RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	IMD4	P50094	524 aa	Known RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	YTP1	P53584	459 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	TRM112	P53738	135 aa	Predicted RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	ELP3	Q02908	557 aa	Known RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	RAD30	Q04049	632 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	BCH1	Q05029	724 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	HIM1	Q06674	414 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	RTT109	Q07794	436 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	RRG7	Q08774	242 aa	Predicted RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	YLR112W	Q12130	139 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	VAM3	Q12241	283 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	FOL3	Q12676	427 aa	Predicted RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	YBL111C	Q3E7Y5	667 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	YOR019W	Q99248	730 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	UBR2	Q07963	1872 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	CHO1	P08456	276 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	MRS3	P10566	314 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	MSI1	P13712	422 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	RED1	P14291	827 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	THR4	P16120	514 aa	Known RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	GIT1	P25346	518 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	RPC53	P25441	422 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	YCL068C	P25593	260 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	RML2	P32611	393 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	DAD2	P36162	133 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	DED81	P38707	554 aa	Known RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	SPT8	P38915	602 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	YER186C	P40101	306 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	PRM5	P40476	318 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	DPH1	P40487	425 aa	Known RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	HXT9	P40885	567 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	YFL012W	P43580	148 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	YFR020W	P43600	232 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	UPF3	P48412	387 aa	Known RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	SKI8	Q02793	397 aa	Predicted RBP	0.82	□□□□□ -2.28
RKR1	YMR247C	RMT2	Q03305	412 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	SRL2	Q12020	392 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	YDR056C	Q12025	205 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	AYT1	Q12226	474 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	EAF3	Q12432	401 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	RMD5	Q12508	421 aa		0.82	□□□□□ -2.28
RKR1	YMR247C	TY3B-G	Q99315	1547 aa		0.81	□□□□□ -2.28
RKR1	YMR247C	YOR1	P53049	1477 aa		0.81	□□□□□ -2.28
RKR1	YMR247C	COR1	P07256	457 aa		0.81	□□□□□ -2.28
RKR1	YMR247C	MSS116	P15424	664 aa	Known RBP	0.81	□□□□□ -2.28
RKR1	YMR247C	ATP10	P18496	279 aa		0.81	□□□□□ -2.28
RKR1	YMR247C	ATP11	P32453	318 aa		0.81	□□□□□ -2.28
RKR1	YMR247C	UIP5	P36137	443 aa		0.81	□□□□□ -2.28
RKR1	YMR247C	MRPL4	P36517	319 aa		0.81	□□□□□ -2.28
RKR1	YMR247C	YBR056W	P38081	501 aa		0.81	□□□□□ -2.28
RKR1	YMR247C	FLO5	P38894	1075 aa		0.81	□□□□□ -2.28
RKR1	YMR247C	JLP2	P40206	208 aa		0.81	□□□□□ -2.28
RKR1	YMR247C	PRE5	P40302	234 aa	Known RBP	0.81	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 34.7 ms