RNA–Protein interactions for RNA: YDL111C

RRP42, Transcript of Exosome non-catalytic core component, yeast

Gene RRP42, Length 798 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP42	YDL111C	YMR310C	Q04867	317 aa	Predicted RBP	3.16	□□□□□ -1.9
RRP42	YDL111C	FMP42	Q04991	504 aa		3.16	□□□□□ -1.9
RRP42	YDL111C	YMR034C	Q05131	434 aa	Predicted RBP	3.16	□□□□□ -1.9
RRP42	YDL111C	TPT1	Q12272	230 aa	Known RBP	3.16	□□□□□ -1.9
RRP42	YDL111C	YIL002W-A	Q3E7Z5	69 aa		3.16	□□□□□ -1.9
RRP42	YDL111C	MSK1	P32048	576 aa		3.15	□□□□□ -1.91
RRP42	YDL111C	EFB1	P32471	206 aa	Known RBP	3.15	□□□□□ -1.91
RRP42	YDL111C	NDC1	P32500	655 aa		3.15	□□□□□ -1.91
RRP42	YDL111C	SKT5	P34226	696 aa		3.15	□□□□□ -1.91
RRP42	YDL111C	TIF5	P38431	405 aa	Known RBP	3.15	□□□□□ -1.91
RRP42	YDL111C	YHR122W	P38829	231 aa		3.15	□□□□□ -1.91
RRP42	YDL111C	CCT4	P39078	528 aa	Known RBP	3.15	□□□□□ -1.91
RRP42	YDL111C	PHB2	P50085	310 aa		3.15	□□□□□ -1.91
RRP42	YDL111C	AVT4	P50944	713 aa		3.15	□□□□□ -1.91
RRP42	YDL111C	PMT5	P52867	743 aa		3.15	□□□□□ -1.91
RRP42	YDL111C	RRP46	P53256	223 aa	Predicted RBP	3.15	□□□□□ -1.91
RRP42	YDL111C	YMR181C	Q03231	154 aa		3.15	□□□□□ -1.91
RRP42	YDL111C	ERP1	Q05359	219 aa	Known RBP	3.15	□□□□□ -1.91
RRP42	YDL111C	YPR078C	Q06813	372 aa		3.15	□□□□□ -1.91
RRP42	YDL111C	SRL1	Q08673	210 aa		3.15	□□□□□ -1.91
RRP42	YDL111C	OPI3	P05375	206 aa		3.14	□□□□□ -1.91
RRP42	YDL111C	ATP1	P07251	545 aa	Known RBP	3.14	□□□□□ -1.91
RRP42	YDL111C	RNA1	P11745	407 aa	Known RBP	3.14	□□□□□ -1.91
RRP42	YDL111C	GRR1	P24814	1151 aa		3.14	□□□□□ -1.91
RRP42	YDL111C	YCR022C	P25620	114 aa		3.14	□□□□□ -1.91
RRP42	YDL111C	KKQ8	P36004	724 aa		3.14	□□□□□ -1.91
RRP42	YDL111C	BZZ1	P38822	633 aa		3.14	□□□□□ -1.91
RRP42	YDL111C	MNN9	P39107	395 aa	Known RBP	3.14	□□□□□ -1.91
RRP42	YDL111C	LCP5	P40079	357 aa	Predicted RBP	3.14	□□□□□ -1.91
RRP42	YDL111C	ATM1	P40416	690 aa		3.14	□□□□□ -1.91
RRP42	YDL111C	YIL169C	P40442	995 aa		3.14	□□□□□ -1.91
RRP42	YDL111C	SNL1	P40548	159 aa		3.14	□□□□□ -1.91
RRP42	YDL111C	LOC1	P43586	204 aa	Predicted RBP	3.14	□□□□□ -1.91
RRP42	YDL111C	RTT101	P47050	842 aa		3.14	□□□□□ -1.91
RRP42	YDL111C	CAF40	P53829	373 aa		3.14	□□□□□ -1.91
RRP42	YDL111C	EGD1	Q02642	157 aa	Known RBP	3.14	□□□□□ -1.91
RRP42	YDL111C	DIG1	Q03063	452 aa	Known RBP	3.14	□□□□□ -1.91
RRP42	YDL111C	LDS2	Q08218	356 aa		3.14	□□□□□ -1.91
RRP42	YDL111C	YPL199C	Q08954	240 aa		3.14	□□□□□ -1.91
RRP42	YDL111C	RAD61	Q99359	647 aa		3.14	□□□□□ -1.91
RRP42	YDL111C	INO80	P53115	1489 aa		3.14	□□□□□ -1.91
RRP42	YDL111C	MRS3	P10566	314 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	MAS2	P11914	482 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	GAL3	P13045	520 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	CDC23	P16522	626 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	SPS22	P25380	463 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	PUT3	P25502	979 aa	Predicted RBP	3.13	□□□□□ -1.91
RRP42	YDL111C	ITR1	P30605	584 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	LOS1	P33418	1100 aa	Predicted RBP	3.13	□□□□□ -1.91
RRP42	YDL111C	PTK1	P36002	662 aa	Predicted RBP	3.13	□□□□□ -1.91
RRP42	YDL111C	PMU1	P36069	295 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	YBR139W	P38109	508 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	MET30	P39014	640 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	DHH1	P39517	506 aa	Known RBP	3.13	□□□□□ -1.91
RRP42	YDL111C	TES1	P41903	349 aa	Known RBP	3.13	□□□□□ -1.91
RRP42	YDL111C	TOS3	P43637	560 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	SFH5	P47008	294 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	YGL114W	P53134	725 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	YGR117C	P53270	476 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	IBD2	P53892	351 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	YNL146W	P53906	100 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	PIR3	Q03180	325 aa		3.13	□□□□□ -1.91
RRP42	YDL111C	PFK27	Q12471	397 aa	Predicted RBP	3.13	□□□□□ -1.91
RRP42	YDL111C	RRP36	Q12481	300 aa	Predicted RBP	3.13	□□□□□ -1.91
RRP42	YDL111C	RRP12	Q12754	1228 aa	Known RBP	3.13	□□□□□ -1.91
RRP42	YDL111C	VPS63	O13549	108 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	PAB1	P04147	577 aa	Known RBP RIP-Chip data	3.12	□□□□□ -1.91	RIP-Chip
RRP42	YDL111C	HEM2	P05373	342 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	TPK3	P05986	398 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	RPL20A	P0CX23	172 aa	Known RBP	3.12	□□□□□ -1.91
RRP42	YDL111C	RPL20B	P0CX24	172 aa	Predicted RBP	3.12	□□□□□ -1.91
RRP42	YDL111C	OM45	P16547	393 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	MRPL8	P22353	238 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	HXT2	P23585	541 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	YCR043C	P25361	127 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	YEF1	P32622	495 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	TOA2	P32774	122 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	RIB7	P33312	244 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	VPS45	P38932	577 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	FAA2	P39518	744 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	YND1	P40009	630 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	YMR134W	P40207	237 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	SIM1	P40472	476 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	LYS12	P40495	371 aa	Known RBP	3.12	□□□□□ -1.91
RRP42	YDL111C	YFR018C	P43599	363 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	GIS2	P53849	153 aa	Known RBP RIP-Chip data	3.12	□□□□□ -1.91	not detected
RRP42	YDL111C	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	3.12	□□□□□ -1.91	not detected
RRP42	YDL111C	ABZ2	Q03266	374 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	BCH1	Q05029	724 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	YLR297W	Q05899	129 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	ASA1	Q06822	443 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	SNA4	Q07549	140 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	RAX1	Q08760	435 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	GLE1	Q12315	538 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	YOR012W	Q12351	137 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	NCA2	Q12374	616 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	AIM45	Q12480	344 aa	Known RBP	3.12	□□□□□ -1.91
RRP42	YDL111C	FSH3	Q99369	266 aa		3.12	□□□□□ -1.91
RRP42	YDL111C	RPL15A	P05748	204 aa	Known RBP	3.11	□□□□□ -1.91
RRP42	YDL111C	CLN3	P13365	580 aa		3.11	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 24 ms