RNA–Protein interactions for RNA: YML112W

CTK3, Transcript of Gamma subunit of C-terminal domain kinase I, yeastyeast

Gene CTK3, Length 891 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTK3YML112W PEX25Q02969 394 aa2.37□□□□□ -2.03
CTK3YML112W GIR2Q03768 265 aaPredicted RBP2.37□□□□□ -2.03
CTK3YML112W PKH2Q12236 1081 aaKnown RBP2.37□□□□□ -2.03
CTK3YML112W TOP1P04786 769 aa2.36□□□□□ -2.03
CTK3YML112W RPS8AP0CX39 200 aaKnown RBP2.36□□□□□ -2.03
CTK3YML112W RPS8BP0CX40 200 aaKnown RBP2.36□□□□□ -2.03
CTK3YML112W SPB1P25582 841 aaPredicted RBP2.36□□□□□ -2.03
CTK3YML112W IDH2P28241 369 aaKnown RBP2.36□□□□□ -2.03
CTK3YML112W ITR1P30605 584 aa2.36□□□□□ -2.03
CTK3YML112W ARF3P40994 183 aaRIP-Chip data2.36□□□□□ -2.03not detected
CTK3YML112W MTM1P53320 366 aa2.36□□□□□ -2.03
CTK3YML112W SVL3Q03088 825 aaKnown RBP2.36□□□□□ -2.03
CTK3YML112W YDR387CQ04162 555 aa2.36□□□□□ -2.03
CTK3YML112W MRD1Q06106 887 aaKnown RBP2.36□□□□□ -2.03
CTK3YML112W TIM18Q08749 192 aa2.36□□□□□ -2.03
CTK3YML112W YPR022CQ12139 1133 aa2.36□□□□□ -2.03
CTK3YML112W MET8P15807 274 aa2.35□□□□□ -2.03
CTK3YML112W SEC66P33754 206 aa2.35□□□□□ -2.03
CTK3YML112W VID24P38263 362 aa2.35□□□□□ -2.03
CTK3YML112W MSG5P38590 489 aa2.35□□□□□ -2.03
CTK3YML112W OTU2P38747 307 aaKnown RBP2.35□□□□□ -2.03
CTK3YML112W SPO22P40511 975 aa2.35□□□□□ -2.03
CTK3YML112W TFG2P41896 400 aaPredicted RBP2.35□□□□□ -2.03
CTK3YML112W CWC25P53854 179 aaKnown RBP2.35□□□□□ -2.03
CTK3YML112W RSN1Q03516 953 aa2.35□□□□□ -2.03
CTK3YML112W PPM1Q04081 328 aa2.35□□□□□ -2.03
CTK3YML112W HSP31Q04432 237 aa2.35□□□□□ -2.03
CTK3YML112W ATG29Q12092 213 aa2.35□□□□□ -2.03
CTK3YML112W SPS4P09937 338 aa2.34□□□□□ -2.03
CTK3YML112W SLY1P22213 666 aa2.34□□□□□ -2.03
CTK3YML112W PRP21P32524 280 aaPredicted RBP2.34□□□□□ -2.03
CTK3YML112W ECM25P32525 599 aa2.34□□□□□ -2.03
CTK3YML112W UTH1P36135 365 aa2.34□□□□□ -2.03
CTK3YML112W SLX1P38324 304 aa2.34□□□□□ -2.03
CTK3YML112W CCT2P39076 527 aaKnown RBP2.34□□□□□ -2.03
CTK3YML112W HXT14P42833 540 aa2.34□□□□□ -2.03
CTK3YML112W ECM27P47144 725 aa2.34□□□□□ -2.03
CTK3YML112W FRE4P53746 719 aa2.34□□□□□ -2.03
CTK3YML112W YIF1P53845 314 aaKnown RBP2.34□□□□□ -2.03
CTK3YML112W KTR5P53966 522 aaPredicted RBP2.34□□□□□ -2.03
CTK3YML112W YMR181CQ03231 154 aa2.34□□□□□ -2.03
CTK3YML112W IMH1Q06704 911 aaKnown RBP2.34□□□□□ -2.03
CTK3YML112W RIM20Q12033 661 aa2.34□□□□□ -2.03
CTK3YML112W HIS4P00815 799 aaKnown RBP2.33□□□□□ -2.04
CTK3YML112W NFT1P0CE68 1218 aa2.33□□□□□ -2.04
CTK3YML112W PCL1P24867 279 aa2.33□□□□□ -2.04
CTK3YML112W APE2P32454 952 aaKnown RBP2.33□□□□□ -2.04
CTK3YML112W NIP100P33420 868 aa2.33□□□□□ -2.04
CTK3YML112W YBR137WP38276 179 aa2.33□□□□□ -2.04
CTK3YML112W UTP9P38882 575 aaKnown RBP2.33□□□□□ -2.04
CTK3YML112W VMA13P41807 478 aaKnown RBP2.33□□□□□ -2.04
CTK3YML112W VTC2P43585 828 aa2.33□□□□□ -2.04
CTK3YML112W HAL1Q01766 294 aa2.33□□□□□ -2.04
CTK3YML112W REX4Q08237 289 aa2.33□□□□□ -2.04
CTK3YML112W FDH1Q08911 376 aa2.33□□□□□ -2.04
CTK3YML112W TRP1P00912 224 aa2.32□□□□□ -2.04
CTK3YML112W ARG3P05150 338 aa2.32□□□□□ -2.04
CTK3YML112W IMP2'P32351 346 aa2.32□□□□□ -2.04
CTK3YML112W LYS1P38998 373 aaRIP-Chip data2.32□□□□□ -2.04not detected
CTK3YML112W MET18P40469 1032 aa2.32□□□□□ -2.04
CTK3YML112W YNR048WP53740 393 aa2.32□□□□□ -2.04
CTK3YML112W TSA2Q04120 196 aa2.32□□□□□ -2.04
CTK3YML112W SNX3Q08826 162 aaKnown RBP2.32□□□□□ -2.04
CTK3YML112W TEF1P02994 458 aaKnown RBP2.31□□□□□ -2.04
CTK3YML112W ARG4P04076 463 aaPredicted RBP2.31□□□□□ -2.04
CTK3YML112W RPI1P23250 407 aaKnown RBP2.31□□□□□ -2.04
CTK3YML112W LSB5P25369 354 aa2.31□□□□□ -2.04
CTK3YML112W GPI10P30777 616 aa2.31□□□□□ -2.04
CTK3YML112W MRPL10P36520 322 aa2.31□□□□□ -2.04
CTK3YML112W YHR054CP38780 354 aa2.31□□□□□ -2.04
CTK3YML112W MNP1P53163 194 aaPredicted RBP2.31□□□□□ -2.04
CTK3YML112W JJJ1P53863 590 aa2.31□□□□□ -2.04
CTK3YML112W APJ1P53940 528 aa2.31□□□□□ -2.04
CTK3YML112W RQC1Q05468 723 aaKnown RBP2.31□□□□□ -2.04
CTK3YML112W SGT1Q08446 395 aa2.31□□□□□ -2.04
CTK3YML112W YDL012CQ12489 107 aa2.31□□□□□ -2.04
CTK3YML112W GPH1P06738 902 aaKnown RBP2.3□□□□□ -2.04
CTK3YML112W MRP7P12687 371 aa2.3□□□□□ -2.04
CTK3YML112W SRV2P17555 526 aaKnown RBP2.3□□□□□ -2.04
CTK3YML112W PPH22P23595 377 aa2.3□□□□□ -2.04
CTK3YML112W MUD1P32605 298 aaKnown RBP2.3□□□□□ -2.04
CTK3YML112W VHC1P38329 1120 aa2.3□□□□□ -2.04
CTK3YML112W ESL1P40456 1118 aa2.3□□□□□ -2.04
CTK3YML112W SAS2P40963 338 aa2.3□□□□□ -2.04
CTK3YML112W BRO1P48582 844 aa2.3□□□□□ -2.04
CTK3YML112W IRC25Q07951 179 aa2.3□□□□□ -2.04
CTK3YML112W ORT1Q12375 292 aa2.3□□□□□ -2.04
CTK3YML112W YLR278CQ05854 1341 aa2.3□□□□□ -2.04
CTK3YML112W CYC3P06182 269 aa2.29□□□□□ -2.04
CTK3YML112W HSP26P15992 214 aaKnown RBP RIP-Chip data2.29□□□□□ -2.04not detected
CTK3YML112W SPO7P18410 259 aa2.29□□□□□ -2.04
CTK3YML112W SNT1P25357 1226 aa2.29□□□□□ -2.04
CTK3YML112W HCS1P34243 683 aa2.29□□□□□ -2.04
CTK3YML112W KKQ8P36004 724 aa2.29□□□□□ -2.04
CTK3YML112W MRP21P38175 177 aa2.29□□□□□ -2.04
CTK3YML112W YHR131CP38835 850 aa2.29□□□□□ -2.04
CTK3YML112W SSU1P41930 458 aa2.29□□□□□ -2.04
CTK3YML112W TIM10P87108 93 aa2.29□□□□□ -2.04
CTK3YML112W VTA1Q06263 330 aa2.29□□□□□ -2.04
CTK3YML112W HSP42Q12329 375 aa2.29□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms