RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C ENT1Q12518 454 aa1.85□□□□□ -2.11
RTR1YER139C MF(ALPHA)1P01149 165 aa1.84□□□□□ -2.11
RTR1YER139C POL4P25615 582 aa1.84□□□□□ -2.11
RTR1YER139C CHS3P29465 1165 aa1.84□□□□□ -2.11
RTR1YER139C SSE2P32590 693 aaKnown RBP1.84□□□□□ -2.11
RTR1YER139C UBP11P36026 717 aa1.84□□□□□ -2.11
RTR1YER139C YBR225WP38321 900 aa1.84□□□□□ -2.11
RTR1YER139C ALK1P43633 760 aaKnown RBP1.84□□□□□ -2.11
RTR1YER139C BUD22Q04347 519 aaKnown RBP1.84□□□□□ -2.11
RTR1YER139C COQ9Q05779 260 aa1.84□□□□□ -2.11
RTR1YER139C YPL272CQ08984 517 aa1.84□□□□□ -2.11
RTR1YER139C YBR126W-AQ8TGU7 68 aa1.84□□□□□ -2.11
RTR1YER139C TRP1P00912 224 aa1.83□□□□□ -2.12
RTR1YER139C CDC16P09798 840 aa1.83□□□□□ -2.12
RTR1YER139C GFD2P25370 566 aaKnown RBP1.83□□□□□ -2.12
RTR1YER139C YCR100CP25606 316 aa1.83□□□□□ -2.12
RTR1YER139C MTM1P53320 366 aa1.83□□□□□ -2.12
RTR1YER139C ODC1Q03028 310 aa1.83□□□□□ -2.12
RTR1YER139C YML037CQ03703 340 aa1.83□□□□□ -2.12
RTR1YER139C LUC7Q07508 261 aaPredicted RBP1.83□□□□□ -2.12
RTR1YER139C IRC25Q07951 179 aa1.83□□□□□ -2.12
RTR1YER139C YDR056CQ12025 205 aa1.83□□□□□ -2.12
RTR1YER139C SGS1P35187 1447 aa1.83□□□□□ -2.12
RTR1YER139C RPL19AP0CX82 189 aaKnown RBP1.82□□□□□ -2.12
RTR1YER139C RPL19BP0CX83 189 aaPredicted RBP1.82□□□□□ -2.12
RTR1YER139C YIH1P25637 258 aa1.82□□□□□ -2.12
RTR1YER139C MRPS9P38120 278 aa1.82□□□□□ -2.12
RTR1YER139C SSU1P41930 458 aa1.82□□□□□ -2.12
RTR1YER139C DUO1P53168 247 aaKnown RBP1.82□□□□□ -2.12
RTR1YER139C ZPR1P53303 486 aaKnown RBP1.82□□□□□ -2.12
RTR1YER139C HST1P53685 503 aa1.82□□□□□ -2.12
RTR1YER139C HEF3P53978 1044 aaKnown RBP1.82□□□□□ -2.12
RTR1YER139C SEC53P07283 254 aaKnown RBP1.81□□□□□ -2.12
RTR1YER139C KAR3P17119 729 aa1.81□□□□□ -2.12
RTR1YER139C EST1P17214 699 aaPredicted RBP1.81□□□□□ -2.12
RTR1YER139C AAC3P18238 307 aa1.81□□□□□ -2.12
RTR1YER139C PEP3P27801 918 aa1.81□□□□□ -2.12
RTR1YER139C ISC1P40015 477 aaKnown RBP1.81□□□□□ -2.12
RTR1YER139C AIM22P47051 409 aa1.81□□□□□ -2.12
RTR1YER139C IPI3P53877 555 aa1.81□□□□□ -2.12
RTR1YER139C TOF2Q02208 771 aa1.81□□□□□ -2.12
RTR1YER139C MRP51Q02950 344 aa1.81□□□□□ -2.12
RTR1YER139C NGL3Q03210 505 aa1.81□□□□□ -2.12
RTR1YER139C FMP40Q08968 688 aaPredicted RBP1.81□□□□□ -2.12
RTR1YER139C SPE4Q12455 300 aa1.81□□□□□ -2.12
RTR1YER139C MRP13P12686 339 aa1.8□□□□□ -2.12
RTR1YER139C ART10P18634 518 aaKnown RBP1.8□□□□□ -2.12
RTR1YER139C RIB5P38145 238 aa1.8□□□□□ -2.12
RTR1YER139C NOP16P40007 231 aaKnown RBP1.8□□□□□ -2.12
RTR1YER139C MDG1P53885 366 aa1.8□□□□□ -2.12
RTR1YER139C HXT11P54862 567 aa1.8□□□□□ -2.12
RTR1YER139C NOP58Q12499 511 aaKnown RBP1.8□□□□□ -2.12
RTR1YER139C YAR066WP0CX18 203 aa1.79□□□□□ -2.12
RTR1YER139C YHR214WP0CX19 203 aa1.79□□□□□ -2.12
RTR1YER139C NPL6P32832 435 aa1.79□□□□□ -2.12
RTR1YER139C REG2P38232 338 aa1.79□□□□□ -2.12
RTR1YER139C TIM17P39515 158 aa1.79□□□□□ -2.12
RTR1YER139C FLC2P39719 783 aa1.79□□□□□ -2.12
RTR1YER139C AIM10P39965 576 aaKnown RBP1.79□□□□□ -2.12
RTR1YER139C ALG5P40350 334 aa1.79□□□□□ -2.12
RTR1YER139C VID30P53076 958 aa1.79□□□□□ -2.12
RTR1YER139C SVL3Q03088 825 aaKnown RBP1.79□□□□□ -2.12
RTR1YER139C YEH1Q07804 573 aa1.79□□□□□ -2.12
RTR1YER139C RCN2Q12044 265 aa1.79□□□□□ -2.12
RTR1YER139C NMD4Q12129 218 aa1.79□□□□□ -2.12
RTR1YER139C YPT6Q99260 215 aa1.79□□□□□ -2.12
RTR1YER139C RAD61Q99359 647 aa1.79□□□□□ -2.12
RTR1YER139C PSK1P31374 1356 aa1.78□□□□□ -2.12
RTR1YER139C SEM1O94742 89 aa1.78□□□□□ -2.12
RTR1YER139C ELO2P25358 347 aa1.78□□□□□ -2.12
RTR1YER139C POP5P28005 173 aa1.78□□□□□ -2.12
RTR1YER139C ATP11P32453 318 aa1.78□□□□□ -2.12
RTR1YER139C NOP4P37838 685 aaKnown RBP1.78□□□□□ -2.12
RTR1YER139C DOT5P40553 215 aa1.78□□□□□ -2.12
RTR1YER139C SGN1P40561 250 aaKnown RBP RIP-Chip data1.78□□□□□ -2.12not detected
RTR1YER139C TRS85P46944 698 aa1.78□□□□□ -2.12
RTR1YER139C UPF3P48412 387 aaKnown RBP1.78□□□□□ -2.12
RTR1YER139C MRX6P48564 524 aa1.78□□□□□ -2.12
RTR1YER139C VPS38Q05919 439 aa1.78□□□□□ -2.12
RTR1YER139C CTI6Q08923 506 aa1.78□□□□□ -2.12
RTR1YER139C GAL80P04387 435 aa1.77□□□□□ -2.13
RTR1YER139C CBS1P14066 229 aa1.77□□□□□ -2.13
RTR1YER139C TCD2P36101 447 aaKnown RBP1.77□□□□□ -2.13
RTR1YER139C MSR1P38714 643 aa1.77□□□□□ -2.13
RTR1YER139C MST28P39552 234 aa1.77□□□□□ -2.13
RTR1YER139C IMD4P50094 524 aaKnown RBP1.77□□□□□ -2.13
RTR1YER139C YDL121CQ07541 149 aa1.77□□□□□ -2.13
RTR1YER139C RLM1Q12224 676 aa1.77□□□□□ -2.13
RTR1YER139C YJR112W-AQ3E743 109 aa1.77□□□□□ -2.13
RTR1YER139C GCN4P03069 281 aa1.76□□□□□ -2.13
RTR1YER139C PAP1P29468 568 aaKnown RBP1.76□□□□□ -2.13
RTR1YER139C ARA1P38115 344 aa1.76□□□□□ -2.13
RTR1YER139C CCT6P39079 546 aa1.76□□□□□ -2.13
RTR1YER139C SYG1P40528 902 aa1.76□□□□□ -2.13
RTR1YER139C RMD8P43620 662 aa1.76□□□□□ -2.13
RTR1YER139C RPT6Q01939 405 aaKnown RBP1.76□□□□□ -2.13
RTR1YER139C YDR239CQ03780 787 aa1.76□□□□□ -2.13
RTR1YER139C PPM1Q04081 328 aa1.76□□□□□ -2.13
RTR1YER139C AIM32Q04689 311 aa1.76□□□□□ -2.13
RTR1YER139C BUD21Q08492 214 aaPredicted RBP1.76□□□□□ -2.13
Retrieved 100 of 5,963 RNA–protein pairs in 19.1 ms