RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeastyeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC40YDR364C HXT1P32465 570 aa3.34□□□□□ -1.88
CDC40YDR364C YEL043WP32618 956 aa3.34□□□□□ -1.88
CDC40YDR364C TFB1P32776 642 aa3.34□□□□□ -1.88
CDC40YDR364C ELF1P36053 145 aa3.34□□□□□ -1.88
CDC40YDR364C MRX3P38172 270 aa3.34□□□□□ -1.88
CDC40YDR364C KSP1P38691 1029 aaKnown RBP3.34□□□□□ -1.88
CDC40YDR364C TCD1P38756 429 aa3.34□□□□□ -1.88
CDC40YDR364C YMR124WP39523 943 aaKnown RBP3.34□□□□□ -1.88
CDC40YDR364C MEP1P40260 492 aa3.34□□□□□ -1.88
CDC40YDR364C SEC24P40482 926 aaKnown RBP3.34□□□□□ -1.88
CDC40YDR364C EFM4P40516 257 aa3.34□□□□□ -1.88
CDC40YDR364C PSA1P41940 361 aaKnown RBP3.34□□□□□ -1.88
CDC40YDR364C ORC5P50874 479 aa3.34□□□□□ -1.88
CDC40YDR364C MNP1P53163 194 aaPredicted RBP3.34□□□□□ -1.88
CDC40YDR364C YGL036WP53185 909 aaPredicted RBP3.34□□□□□ -1.88
CDC40YDR364C DAK1P54838 584 aaKnown RBP3.34□□□□□ -1.88
CDC40YDR364C SML1Q04964 104 aa3.34□□□□□ -1.88
CDC40YDR364C ECM22Q05958 814 aaPredicted RBP3.34□□□□□ -1.88
CDC40YDR364C VAC14Q06708 880 aa3.34□□□□□ -1.88
CDC40YDR364C TSR1Q07381 788 aaKnown RBP3.34□□□□□ -1.88
CDC40YDR364C SHS1Q07657 551 aa3.34□□□□□ -1.88
CDC40YDR364C CUE5Q08412 411 aaKnown RBP3.34□□□□□ -1.88
CDC40YDR364C BUD7Q08754 746 aa3.34□□□□□ -1.88
CDC40YDR364C ULA1Q12059 462 aa3.34□□□□□ -1.88
CDC40YDR364C AFI1Q99222 893 aa3.34□□□□□ -1.88
CDC40YDR364C CDC33P07260 213 aaKnown RBP3.33□□□□□ -1.88
CDC40YDR364C DFR1P07807 211 aaKnown RBP RIP-Chip data3.33□□□□□ -1.88not detected
CDC40YDR364C WHI2P12611 486 aa3.33□□□□□ -1.88
CDC40YDR364C ABF1P14164 731 aa3.33□□□□□ -1.88
CDC40YDR364C APE1P14904 514 aa3.33□□□□□ -1.88
CDC40YDR364C MDH1P17505 334 aaKnown RBP RIP-Chip data3.33□□□□□ -1.88not detected
CDC40YDR364C YIH1P25637 258 aa3.33□□□□□ -1.88
CDC40YDR364C RFA2P26754 273 aaKnown RBP3.33□□□□□ -1.88
CDC40YDR364C MSS51P32335 436 aa3.33□□□□□ -1.88
CDC40YDR364C RME1P32338 300 aaKnown RBP3.33□□□□□ -1.88
CDC40YDR364C SIP1P32578 815 aa3.33□□□□□ -1.88
CDC40YDR364C SRB5P32585 307 aa3.33□□□□□ -1.88
CDC40YDR364C MRPL7P36519 292 aa3.33□□□□□ -1.88
CDC40YDR364C AGP2P38090 596 aa3.33□□□□□ -1.88
CDC40YDR364C MMS4P38257 691 aa3.33□□□□□ -1.88
CDC40YDR364C OTU2P38747 307 aaKnown RBP3.33□□□□□ -1.88
CDC40YDR364C BUD16P39988 312 aa3.33□□□□□ -1.88
CDC40YDR364C SGN1P40561 250 aaKnown RBP RIP-Chip data3.33□□□□□ -1.88not detected
CDC40YDR364C ROK1P45818 564 aaPredicted RBP3.33□□□□□ -1.88
CDC40YDR364C SAE2P46946 345 aa3.33□□□□□ -1.88
CDC40YDR364C UBX6P47049 396 aa3.33□□□□□ -1.88
CDC40YDR364C CPR7P47103 393 aa3.33□□□□□ -1.88
CDC40YDR364C YGR079WP53249 370 aa3.33□□□□□ -1.88
CDC40YDR364C RPA49Q01080 415 aaPredicted RBP3.33□□□□□ -1.88
CDC40YDR364C CWC21Q03375 135 aaKnown RBP3.33□□□□□ -1.88
CDC40YDR364C EFR3Q03653 782 aaKnown RBP3.33□□□□□ -1.88
CDC40YDR364C ECM7Q06200 448 aa3.33□□□□□ -1.88
CDC40YDR364C ATG23Q06671 453 aa3.33□□□□□ -1.88
CDC40YDR364C FMP45Q07651 309 aa3.33□□□□□ -1.88
CDC40YDR364C DAS2Q12084 232 aa3.33□□□□□ -1.88
CDC40YDR364C NFI1Q12216 726 aa3.33□□□□□ -1.88
CDC40YDR364C FRE6Q12473 712 aa3.33□□□□□ -1.88
CDC40YDR364C YPT6Q99260 215 aa3.33□□□□□ -1.88
CDC40YDR364C TAO3P40468 2376 aa3.32□□□□□ -1.88
CDC40YDR364C CET1O13297 549 aaPredicted RBP3.32□□□□□ -1.88
CDC40YDR364C GAL80P04387 435 aa3.32□□□□□ -1.88
CDC40YDR364C RPL4AP10664 362 aaKnown RBP3.32□□□□□ -1.88
CDC40YDR364C VMA16P23968 213 aa3.32□□□□□ -1.88
CDC40YDR364C RRP7P25368 297 aaPredicted RBP3.32□□□□□ -1.88
CDC40YDR364C MSS1P32559 526 aaPredicted RBP3.32□□□□□ -1.88
CDC40YDR364C HOT13P36078 116 aa3.32□□□□□ -1.88
CDC40YDR364C CTP1P38152 299 aa3.32□□□□□ -1.88
CDC40YDR364C SDH8P38345 138 aa3.32□□□□□ -1.88
CDC40YDR364C HIS2P38635 335 aa3.32□□□□□ -1.88
CDC40YDR364C ARO9P38840 513 aaPredicted RBP3.32□□□□□ -1.88
CDC40YDR364C BUR6P40096 142 aa3.32□□□□□ -1.88
CDC40YDR364C MET28P40573 187 aa3.32□□□□□ -1.88
CDC40YDR364C SAD1P43589 448 aa3.32□□□□□ -1.88
CDC40YDR364C RPL4BP49626 362 aaKnown RBP3.32□□□□□ -1.88
CDC40YDR364C CWC22P53333 577 aaKnown RBP3.32□□□□□ -1.88
CDC40YDR364C MAL13P53338 473 aa3.32□□□□□ -1.88
CDC40YDR364C JJJ1P53863 590 aa3.32□□□□□ -1.88
CDC40YDR364C BOP3P53958 396 aa3.32□□□□□ -1.88
CDC40YDR364C RRB1Q04225 511 aaKnown RBP3.32□□□□□ -1.88
CDC40YDR364C YMR114CQ04471 368 aaKnown RBP3.32□□□□□ -1.88
CDC40YDR364C CRN1Q06440 651 aa3.32□□□□□ -1.88
CDC40YDR364C IZH3Q07959 543 aa3.32□□□□□ -1.88
CDC40YDR364C ATG29Q12092 213 aa3.32□□□□□ -1.88
CDC40YDR364C GPM3Q12326 303 aa3.32□□□□□ -1.88
CDC40YDR364C SPE4Q12455 300 aa3.32□□□□□ -1.88
CDC40YDR364C ZPS1Q12512 249 aa3.32□□□□□ -1.88
CDC40YDR364C GSC2P40989 1895 aa3.32□□□□□ -1.88
CDC40YDR364C MYO1P08964 1928 aa3.32□□□□□ -1.88
CDC40YDR364C ADE4P04046 510 aaKnown RBP3.31□□□□□ -1.88
CDC40YDR364C ARD1P07347 238 aaPredicted RBP3.31□□□□□ -1.88
CDC40YDR364C YML003WP0CF16 290 aa3.31□□□□□ -1.88
CDC40YDR364C ASP3-2P0CX77 362 aa3.31□□□□□ -1.88
CDC40YDR364C ASP3-3P0CX78 362 aa3.31□□□□□ -1.88
CDC40YDR364C ASP3-4P0CX79 362 aa3.31□□□□□ -1.88
CDC40YDR364C ASP3-1P0CZ17 362 aa3.31□□□□□ -1.88
CDC40YDR364C CDC42P19073 191 aa3.31□□□□□ -1.88
CDC40YDR364C DAL2P25335 343 aa3.31□□□□□ -1.88
CDC40YDR364C RRT12P25381 491 aa3.31□□□□□ -1.88
CDC40YDR364C ERV1P27882 189 aa3.31□□□□□ -1.88
CDC40YDR364C SMI1P32566 505 aa3.31□□□□□ -1.88
Retrieved 100 of 5,963 RNA–protein pairs in 18.1 ms