RNA–Protein interactions for RNA: YPR010C

RPA135, Transcript of RNA polymerase I second largest subunit A135, yeast

Gene RPA135, Length 3,612 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPA135	YPR010C	YRF1-1	P0CX20	1796 aa		4.23	□□□□□ -1.73
RPA135	YPR010C	YRF1-5	P0CX21	1796 aa		4.23	□□□□□ -1.73
RPA135	YPR010C	YRF1-8	P0CX22	1796 aa		4.23	□□□□□ -1.73
RPA135	YPR010C	PDR11	P40550	1411 aa		4.23	□□□□□ -1.73
RPA135	YPR010C	SNU71	P53207	620 aa	Known RBP	4.22	□□□□□ -1.73
RPA135	YPR010C	MAK10	Q02197	733 aa		4.22	□□□□□ -1.73
RPA135	YPR010C	DAL5	P15365	543 aa		4.22	□□□□□ -1.73
RPA135	YPR010C	PPH3	P32345	308 aa		4.22	□□□□□ -1.73
RPA135	YPR010C	RPN1	P38764	993 aa	Known RBP	4.22	□□□□□ -1.73
RPA135	YPR010C	RTF1	P53064	558 aa		4.22	□□□□□ -1.73
RPA135	YPR010C	YML020W	Q03722	664 aa		4.22	□□□□□ -1.73
RPA135	YPR010C	RAV1	P47104	1357 aa		4.22	□□□□□ -1.73
RPA135	YPR010C	SEC7	P11075	2009 aa	Known RBP	4.22	□□□□□ -1.73
RPA135	YPR010C	TPD3	P31383	635 aa		4.21	□□□□□ -1.73
RPA135	YPR010C	IRC20	Q06554	1556 aa		4.21	□□□□□ -1.74
RPA135	YPR010C	PDR12	Q02785	1511 aa		4.21	□□□□□ -1.74
RPA135	YPR010C	CFT1	Q06632	1357 aa	Known RBP	4.21	□□□□□ -1.74
RPA135	YPR010C	PRS1	P32895	427 aa	Known RBP	4.21	□□□□□ -1.74
RPA135	YPR010C	LEU2	P04173	364 aa	Predicted RBP	4.21	□□□□□ -1.74
RPA135	YPR010C	HIM1	Q06674	414 aa		4.21	□□□□□ -1.74
RPA135	YPR010C	AIM44	Q99299	758 aa		4.21	□□□□□ -1.74
RPA135	YPR010C	PDI1	P17967	522 aa	Known RBP	4.2	□□□□□ -1.74
RPA135	YPR010C	PRP45	P28004	379 aa	Predicted RBP	4.2	□□□□□ -1.74
RPA135	YPR010C	THI12	P42883	340 aa		4.19	□□□□□ -1.74
RPA135	YPR010C	THI5	P43534	340 aa		4.19	□□□□□ -1.74
RPA135	YPR010C	YFR016C	P43597	1233 aa	Known RBP	4.19	□□□□□ -1.74
RPA135	YPR010C	THI11	P47183	340 aa		4.19	□□□□□ -1.74
RPA135	YPR010C	THI13	Q07748	340 aa		4.19	□□□□□ -1.74
RPA135	YPR010C	RVB2	Q12464	471 aa	Known RBP	4.19	□□□□□ -1.74
RPA135	YPR010C	SWE1	P32944	819 aa		4.19	□□□□□ -1.74
RPA135	YPR010C	LAM6	Q08001	693 aa		4.19	□□□□□ -1.74
RPA135	YPR010C	YLR419W	Q06698	1435 aa	Known RBP	4.18	□□□□□ -1.74
RPA135	YPR010C	TOP1	P04786	769 aa		4.18	□□□□□ -1.74
RPA135	YPR010C	YNR029C	P53729	429 aa	Known RBP	4.18	□□□□□ -1.74
RPA135	YPR010C	HSP104	P31539	908 aa	Known RBP	4.17	□□□□□ -1.74
RPA135	YPR010C	VPS27	P40343	622 aa	Known RBP	4.17	□□□□□ -1.74
RPA135	YPR010C	FKH1	P40466	484 aa		4.17	□□□□□ -1.74
RPA135	YPR010C	YRB30	P53107	440 aa	Predicted RBP	4.17	□□□□□ -1.74
RPA135	YPR010C	RPC31	P17890	251 aa		4.17	□□□□□ -1.74
RPA135	YPR010C	RAD2	P07276	1031 aa		4.16	□□□□□ -1.74
RPA135	YPR010C	YGL081W	P53156	320 aa		4.16	□□□□□ -1.74
RPA135	YPR010C	PUF6	Q04373	656 aa	Known RBP	4.16	□□□□□ -1.74
RPA135	YPR010C	SSP1	P38871	571 aa		4.16	□□□□□ -1.74
RPA135	YPR010C	CDC45	Q08032	650 aa		4.16	□□□□□ -1.74
RPA135	YPR010C	IML1	P47170	1584 aa		4.15	□□□□□ -1.74
RPA135	YPR010C	YEF3	P16521	1044 aa	Known RBP	4.15	□□□□□ -1.74
RPA135	YPR010C	RRT14	P40470	206 aa		4.15	□□□□□ -1.74
RPA135	YPR010C	DOP1	Q03921	1698 aa		4.15	□□□□□ -1.74
RPA135	YPR010C	SUI2	P20459	304 aa	Known RBP	4.15	□□□□□ -1.75
RPA135	YPR010C	CPS1	P27614	576 aa		4.15	□□□□□ -1.75
RPA135	YPR010C	TRM3	Q07527	1436 aa		4.14	□□□□□ -1.75
RPA135	YPR010C	KRI1	P42846	591 aa	Known RBP	4.14	□□□□□ -1.75
RPA135	YPR010C	MTR4	P47047	1073 aa	Known RBP	4.14	□□□□□ -1.75
RPA135	YPR010C	GCN2	P15442	1659 aa		4.14	□□□□□ -1.75
RPA135	YPR010C	MLP1	Q02455	1875 aa	Known RBP	4.14	□□□□□ -1.75
RPA135	YPR010C	SAP155	P43612	1002 aa		4.14	□□□□□ -1.75
RPA135	YPR010C	VMR1	P38735	1592 aa		4.13	□□□□□ -1.75
RPA135	YPR010C	VPS64	Q03944	604 aa		4.13	□□□□□ -1.75
RPA135	YPR010C	RMD1	Q03441	430 aa		4.13	□□□□□ -1.75
RPA135	YPR010C	RTT109	Q07794	436 aa		4.13	□□□□□ -1.75
RPA135	YPR010C	PRP5	P21372	849 aa	Predicted RBP	4.12	□□□□□ -1.75
RPA135	YPR010C	AKL1	P38080	1108 aa	Known RBP	4.12	□□□□□ -1.75
RPA135	YPR010C	TPO2	P53283	614 aa		4.12	□□□□□ -1.75
RPA135	YPR010C	APP1	P53933	587 aa		4.12	□□□□□ -1.75
RPA135	YPR010C	PRD1	P25375	712 aa		4.12	□□□□□ -1.75
RPA135	YPR010C	MIF2	P35201	549 aa		4.12	□□□□□ -1.75
RPA135	YPR010C	RIM101	P33400	625 aa		4.12	□□□□□ -1.75
RPA135	YPR010C	PKH1	Q03407	766 aa		4.12	□□□□□ -1.75
RPA135	YPR010C	MAM3	Q12296	706 aa		4.12	□□□□□ -1.75
RPA135	YPR010C	BDP1	P46678	594 aa		4.11	□□□□□ -1.75
RPA135	YPR010C	MSB3	P48566	633 aa	Predicted RBP	4.11	□□□□□ -1.75
RPA135	YPR010C	RRP46	P53256	223 aa	Predicted RBP	4.11	□□□□□ -1.75
RPA135	YPR010C	GRX4	P32642	244 aa		4.11	□□□□□ -1.75
RPA135	YPR010C	RFC1	P38630	861 aa	Known RBP	4.11	□□□□□ -1.75
RPA135	YPR010C	ZDS1	P50111	915 aa	Known RBP	4.11	□□□□□ -1.75
RPA135	YPR010C	SWC3	P31376	625 aa		4.1	□□□□□ -1.75
RPA135	YPR010C	YGR122W	P53272	402 aa		4.1	□□□□□ -1.75
RPA135	YPR010C	THI22	Q06490	572 aa		4.1	□□□□□ -1.75
RPA135	YPR010C	MAK21	Q12176	1025 aa	Known RBP	4.1	□□□□□ -1.75
RPA135	YPR010C	YFR006W	P43590	535 aa		4.1	□□□□□ -1.75
RPA135	YPR010C	BMS1	Q08965	1183 aa	Known RBP	4.1	□□□□□ -1.75
RPA135	YPR010C	YML133C	Q03099	1374 aa		4.1	□□□□□ -1.75
RPA135	YPR010C	YLL067C	Q07888	1374 aa		4.1	□□□□□ -1.75
RPA135	YPR010C	YLL066C	Q99208	1374 aa		4.1	□□□□□ -1.75
RPA135	YPR010C	YOR093C	Q12275	1648 aa		4.1	□□□□□ -1.75
RPA135	YPR010C	NMD2	P38798	1089 aa	Known RBP	4.09	□□□□□ -1.75
RPA135	YPR010C	XKS1	P42826	600 aa		4.09	□□□□□ -1.75
RPA135	YPR010C	SPO1	P53541	631 aa		4.09	□□□□□ -1.75
RPA135	YPR010C	YMR196W	Q04336	1088 aa		4.09	□□□□□ -1.75
RPA135	YPR010C	PAM1	P37304	830 aa	Known RBP	4.09	□□□□□ -1.75
RPA135	YPR010C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	not detected
RPA135	YPR010C	FAR11	P53917	953 aa		4.09	□□□□□ -1.75
RPA135	YPR010C	EAF7	P53911	425 aa	Known RBP	4.09	□□□□□ -1.76
RPA135	YPR010C	MDG1	P53885	366 aa		4.08	□□□□□ -1.76
RPA135	YPR010C	ALE1	Q08548	619 aa		4.08	□□□□□ -1.76
RPA135	YPR010C	ENT1	Q12518	454 aa		4.08	□□□□□ -1.76
RPA135	YPR010C	TY3B-I	Q7LHG5	1498 aa	Known RBP	4.08	□□□□□ -1.76
RPA135	YPR010C	OXP1	P28273	1286 aa		4.08	□□□□□ -1.76
RPA135	YPR010C	NUP133	P36161	1157 aa		4.08	□□□□□ -1.76
RPA135	YPR010C	YNG2	P38806	282 aa	Known RBP	4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 12 ms