RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	RIX1	P38883	763 aa	Predicted RBP	6.19	□□□□□ -1.42
SEC39	YLR440C	GDB1	Q06625	1536 aa		6.19	□□□□□ -1.42
SEC39	YLR440C	LAM6	Q08001	693 aa		6.19	□□□□□ -1.42
SEC39	YLR440C	TRM3	Q07527	1436 aa		6.18	□□□□□ -1.42
SEC39	YLR440C	NUP157	P40064	1391 aa	Known RBP	6.18	□□□□□ -1.42
SEC39	YLR440C	ISW1	P38144	1129 aa		6.18	□□□□□ -1.42
SEC39	YLR440C	YML020W	Q03722	664 aa		6.17	□□□□□ -1.42
SEC39	YLR440C	MLP2	P40457	1679 aa		6.17	□□□□□ -1.42
SEC39	YLR440C	PDR10	P51533	1564 aa		6.17	□□□□□ -1.42
SEC39	YLR440C	KIP3	P53086	805 aa	Known RBP	6.16	□□□□□ -1.42
SEC39	YLR440C	NOP7	P53261	605 aa	Known RBP	6.16	□□□□□ -1.42
SEC39	YLR440C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	6.16	□□□□□ -1.42	not detected
SEC39	YLR440C	FPR4	Q06205	392 aa	Predicted RBP	6.16	□□□□□ -1.42
SEC39	YLR440C	YOR093C	Q12275	1648 aa		6.15	□□□□□ -1.42
SEC39	YLR440C	SSP1	P38871	571 aa		6.15	□□□□□ -1.42
SEC39	YLR440C	NOP8	Q08287	484 aa	Predicted RBP	6.15	□□□□□ -1.42
SEC39	YLR440C	BUD21	Q08492	214 aa	Predicted RBP	6.15	□□□□□ -1.42
SEC39	YLR440C	PIL1	P53252	339 aa	Known RBP	6.14	□□□□□ -1.43
SEC39	YLR440C	FAR11	P53917	953 aa		6.14	□□□□□ -1.43
SEC39	YLR440C	YMR196W	Q04336	1088 aa		6.14	□□□□□ -1.43
SEC39	YLR440C	RPT2	P40327	437 aa	Known RBP	6.14	□□□□□ -1.43
SEC39	YLR440C	GRX3	Q03835	250 aa		6.14	□□□□□ -1.43
SEC39	YLR440C	BUD3	P25558	1636 aa		6.13	□□□□□ -1.43
SEC39	YLR440C	GEF1	P37020	779 aa		6.13	□□□□□ -1.43
SEC39	YLR440C	YCK3	P39962	524 aa		6.13	□□□□□ -1.43
SEC39	YLR440C	YNL011C	P53980	444 aa		6.13	□□□□□ -1.43
SEC39	YLR440C	TAF13	P11747	167 aa		6.12	□□□□□ -1.43
SEC39	YLR440C	HSC82	P15108	705 aa	Known RBP	6.12	□□□□□ -1.43
SEC39	YLR440C	PDR15	Q04182	1529 aa	Known RBP	6.12	□□□□□ -1.43
SEC39	YLR440C	PRI1	P10363	409 aa		6.11	□□□□□ -1.43
SEC39	YLR440C	HOS4	P40480	1083 aa		6.11	□□□□□ -1.43
SEC39	YLR440C	YJR008W	P47085	338 aa		6.11	□□□□□ -1.43
SEC39	YLR440C	YGR130C	P53278	816 aa		6.11	□□□□□ -1.43
SEC39	YLR440C	PDR1	P12383	1068 aa		6.11	□□□□□ -1.43
SEC39	YLR440C	NMD2	P38798	1089 aa	Known RBP	6.11	□□□□□ -1.43
SEC39	YLR440C	TY4A-J	P47023	414 aa		6.11	□□□□□ -1.43
SEC39	YLR440C	ZDS1	P50111	915 aa	Known RBP	6.11	□□□□□ -1.43
SEC39	YLR440C	YSH1	Q06224	779 aa	Predicted RBP	6.11	□□□□□ -1.43
SEC39	YLR440C	DAL5	P15365	543 aa		6.1	□□□□□ -1.43
SEC39	YLR440C	DOS2	P54858	310 aa		6.1	□□□□□ -1.43
SEC39	YLR440C	ARO1	P08566	1588 aa	Known RBP	6.1	□□□□□ -1.43
SEC39	YLR440C	CDC11	P32458	415 aa		6.09	□□□□□ -1.43
SEC39	YLR440C	SSF1	P38789	453 aa	Predicted RBP	6.08	□□□□□ -1.44
SEC39	YLR440C	BRE1	Q07457	700 aa	Known RBP	6.08	□□□□□ -1.44
SEC39	YLR440C	SEC20	P28791	383 aa		6.08	□□□□□ -1.44
SEC39	YLR440C	SPC110	P32380	944 aa		6.07	□□□□□ -1.44
SEC39	YLR440C	SPC42	P36094	363 aa		6.07	□□□□□ -1.44
SEC39	YLR440C	CHC1	P22137	1653 aa	Known RBP	6.07	□□□□□ -1.44
SEC39	YLR440C	RAD2	P07276	1031 aa		6.05	□□□□□ -1.44
SEC39	YLR440C	PEA2	P40091	420 aa		6.05	□□□□□ -1.44
SEC39	YLR440C	AIM21	P40563	679 aa		6.05	□□□□□ -1.44
SEC39	YLR440C	VPS4	P52917	437 aa		6.04	□□□□□ -1.44
SEC39	YLR440C	DNF3	Q12674	1656 aa		6.03	□□□□□ -1.44
SEC39	YLR440C	SPT21	P35209	758 aa		6.03	□□□□□ -1.44
SEC39	YLR440C	CAT8	P39113	1433 aa		6.03	□□□□□ -1.44
SEC39	YLR440C	SLX8	P40072	274 aa		6.02	□□□□□ -1.45
SEC39	YLR440C	CKB1	P43639	278 aa		6.02	□□□□□ -1.45
SEC39	YLR440C	NNF2	P53253	936 aa		6.02	□□□□□ -1.45
SEC39	YLR440C	GIR2	Q03768	265 aa	Predicted RBP	6.02	□□□□□ -1.45
SEC39	YLR440C	PET111	P08468	800 aa		6.02	□□□□□ -1.45
SEC39	YLR440C	NST1	P53935	1240 aa		6.02	□□□□□ -1.45
SEC39	YLR440C	GAL11	P19659	1081 aa		6.01	□□□□□ -1.45
SEC39	YLR440C	MEH1	Q02205	184 aa		6.01	□□□□□ -1.45
SEC39	YLR440C	RCF1	Q03713	159 aa		6.01	□□□□□ -1.45
SEC39	YLR440C	YAP3	P38749	330 aa		6.01	□□□□□ -1.45
SEC39	YLR440C	SEC9	P40357	651 aa		6.01	□□□□□ -1.45
SEC39	YLR440C	CFT2	Q12102	859 aa	Predicted RBP	6.01	□□□□□ -1.45
SEC39	YLR440C	GEA1	P47102	1408 aa	Predicted RBP	6	□□□□□ -1.45
SEC39	YLR440C	PKH1	Q03407	766 aa		6	□□□□□ -1.45
SEC39	YLR440C	PSK2	Q08217	1101 aa		6	□□□□□ -1.45
SEC39	YLR440C	ETT1	Q08421	412 aa	Known RBP	6	□□□□□ -1.45
SEC39	YLR440C	YSP2	Q06681	1438 aa		6	□□□□□ -1.45
SEC39	YLR440C	TY3B-G	Q99315	1547 aa		5.99	□□□□□ -1.45
SEC39	YLR440C	MCM1	P11746	286 aa		5.99	□□□□□ -1.45
SEC39	YLR440C	DJP1	P40564	432 aa		5.99	□□□□□ -1.45
SEC39	YLR440C	YDR341C	Q05506	607 aa	Known RBP	5.99	□□□□□ -1.45
SEC39	YLR440C	SYH1	Q02875	849 aa	Known RBP	5.99	□□□□□ -1.45
SEC39	YLR440C	APL5	Q08951	932 aa	Known RBP	5.98	□□□□□ -1.45
SEC39	YLR440C	BNR1	P40450	1375 aa		5.98	□□□□□ -1.45
SEC39	YLR440C	SEC7	P11075	2009 aa	Known RBP	5.98	□□□□□ -1.45
SEC39	YLR440C	YBT1	P32386	1661 aa		5.98	□□□□□ -1.45
SEC39	YLR440C	SSA4	P22202	642 aa	Known RBP	5.97	□□□□□ -1.45
SEC39	YLR440C	SEC27	P41811	889 aa	Known RBP	5.97	□□□□□ -1.45
SEC39	YLR440C	MTR4	P47047	1073 aa	Known RBP	5.96	□□□□□ -1.45
SEC39	YLR440C	MAK10	Q02197	733 aa		5.96	□□□□□ -1.45
SEC39	YLR440C	RAD51	P25454	400 aa		5.96	□□□□□ -1.46
SEC39	YLR440C	YLR257W	Q06146	321 aa	Known RBP	5.96	□□□□□ -1.46
SEC39	YLR440C	MFT1	P33441	392 aa	Known RBP	5.95	□□□□□ -1.46
SEC39	YLR440C	MPE1	P35728	441 aa	Known RBP	5.95	□□□□□ -1.46
SEC39	YLR440C	YGL081W	P53156	320 aa		5.95	□□□□□ -1.46
SEC39	YLR440C	CEF1	Q03654	590 aa	Predicted RBP	5.95	□□□□□ -1.46
SEC39	YLR440C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	5.95	□□□□□ -1.46	not detected
SEC39	YLR440C	PTP3	P40048	928 aa		5.95	□□□□□ -1.46
SEC39	YLR440C	GDE1	Q02979	1223 aa		5.95	□□□□□ -1.46
SEC39	YLR440C	UBX5	Q06682	500 aa		5.95	□□□□□ -1.46
SEC39	YLR440C	LEM3	P42838	414 aa		5.94	□□□□□ -1.46
SEC39	YLR440C	NMD3	P38861	518 aa	Known RBP	5.93	□□□□□ -1.46
SEC39	YLR440C	MSH4	P40965	878 aa	Predicted RBP	5.93	□□□□□ -1.46
SEC39	YLR440C	TAF1	P46677	1066 aa		5.93	□□□□□ -1.46
SEC39	YLR440C	YLL054C	Q12244	843 aa		5.93	□□□□□ -1.46

Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms