RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W TY1B-HO13535 1793 aa6.67□□□□□ -1.34
SSL1YLR005W TY1B-DR5P0C2I2 1755 aa6.67□□□□□ -1.34
SSL1YLR005W TY1B-DR6P0C2I3 1755 aa6.67□□□□□ -1.34
SSL1YLR005W TY1B-LR2P0C2I5 1755 aa6.67□□□□□ -1.34
SSL1YLR005W TY1B-LR3P0C2I6 1755 aaKnown RBP6.67□□□□□ -1.34
SSL1YLR005W TY1B-PR1P0C2I9 1755 aaKnown RBP6.67□□□□□ -1.34
SSL1YLR005W TY1B-PR2P0C2J0 1756 aa6.67□□□□□ -1.34
SSL1YLR005W TY1B-PR3P0C2J1 1755 aaKnown RBP6.67□□□□□ -1.34
SSL1YLR005W TY1B-JR1P47098 1755 aa6.67□□□□□ -1.34
SSL1YLR005W TY1B-ML2Q03434 1755 aaKnown RBP6.67□□□□□ -1.34
SSL1YLR005W TY1B-ER1Q03612 1755 aa6.67□□□□□ -1.34
SSL1YLR005W TY1B-ML1Q04711 1755 aaKnown RBP6.67□□□□□ -1.34
SSL1YLR005W TY1B-GR2Q12269 1755 aa6.67□□□□□ -1.34
SSL1YLR005W TY1B-OLQ12273 1755 aa6.67□□□□□ -1.34
SSL1YLR005W TY1B-PLQ12414 1755 aaKnown RBP6.67□□□□□ -1.34
SSL1YLR005W TY2B-BQ12491 1770 aa6.67□□□□□ -1.34
SSL1YLR005W SPT23P35210 1082 aa6.67□□□□□ -1.34
SSL1YLR005W YDR090CQ03193 310 aa6.67□□□□□ -1.34
SSL1YLR005W TOP2P06786 1428 aaKnown RBP6.66□□□□□ -1.34
SSL1YLR005W GEA2P39993 1459 aaKnown RBP6.66□□□□□ -1.34
SSL1YLR005W REF2P42073 533 aaPredicted RBP6.66□□□□□ -1.34
SSL1YLR005W TY1B-DR3Q99231 1755 aa6.65□□□□□ -1.35
SSL1YLR005W BNI1P41832 1953 aa6.63□□□□□ -1.35
SSL1YLR005W KIC1P38692 1080 aa6.63□□□□□ -1.35
SSL1YLR005W BNI4P53858 892 aa6.63□□□□□ -1.35
SSL1YLR005W PTC2P39966 464 aaKnown RBP6.62□□□□□ -1.35
SSL1YLR005W ISU2Q12056 156 aa6.62□□□□□ -1.35
SSL1YLR005W MMS22Q06164 1454 aa6.61□□□□□ -1.35
SSL1YLR005W RQC2Q12532 1038 aaKnown RBP6.61□□□□□ -1.35
SSL1YLR005W TRM732Q03496 1420 aa6.6□□□□□ -1.35
SSL1YLR005W POL1P13382 1468 aa6.58□□□□□ -1.36
SSL1YLR005W PDR1P12383 1068 aa6.57□□□□□ -1.36
SSL1YLR005W XDJ1P39102 459 aa6.57□□□□□ -1.36
SSL1YLR005W YML082WQ04533 649 aaKnown RBP6.57□□□□□ -1.36
SSL1YLR005W NTE1Q04958 1679 aa6.57□□□□□ -1.36
SSL1YLR005W YPR015CQ12531 247 aa6.56□□□□□ -1.36
SSL1YLR005W SMC4Q12267 1418 aa6.55□□□□□ -1.36
SSL1YLR005W YRF1-1P0CX20 1796 aa6.55□□□□□ -1.36
SSL1YLR005W YRF1-5P0CX21 1796 aa6.55□□□□□ -1.36
SSL1YLR005W YRF1-8P0CX22 1796 aa6.55□□□□□ -1.36
SSL1YLR005W COX6P00427 148 aa6.55□□□□□ -1.36
SSL1YLR005W RPP1BP10622 106 aaKnown RBP6.55□□□□□ -1.36
SSL1YLR005W VPS15P22219 1454 aa6.54□□□□□ -1.36
SSL1YLR005W YOR1P53049 1477 aa6.54□□□□□ -1.36
SSL1YLR005W RAM1P22007 431 aa6.54□□□□□ -1.36
SSL1YLR005W TY1B-JR2P47100 1755 aaKnown RBP6.53□□□□□ -1.36
SSL1YLR005W TY1B-ER2Q03619 1755 aa6.53□□□□□ -1.36
SSL1YLR005W TY1B-MR1Q04214 1755 aa6.53□□□□□ -1.36
SSL1YLR005W TY1B-MR2Q04670 1755 aaKnown RBP6.53□□□□□ -1.36
SSL1YLR005W TY1B-LR1Q12088 1755 aaKnown RBP6.53□□□□□ -1.36
SSL1YLR005W TY1B-NL1Q12112 1755 aa6.53□□□□□ -1.36
SSL1YLR005W TY1B-GR1Q12141 1755 aa6.53□□□□□ -1.36
SSL1YLR005W TY1B-BLQ12490 1755 aa6.53□□□□□ -1.36
SSL1YLR005W RPO21P04050 1733 aaKnown RBP6.52□□□□□ -1.36
SSL1YLR005W NUP159P40477 1460 aa6.52□□□□□ -1.36
SSL1YLR005W SPP41P38904 1435 aa6.52□□□□□ -1.37
SSL1YLR005W PBS2P08018 668 aa6.52□□□□□ -1.37
SSL1YLR005W PEX21P50091 288 aa6.52□□□□□ -1.37
SSL1YLR005W YRR1Q12172 810 aa6.52□□□□□ -1.37
SSL1YLR005W DRS2P39524 1355 aa6.52□□□□□ -1.37
SSL1YLR005W CKB1P43639 278 aa6.51□□□□□ -1.37
SSL1YLR005W SAS10Q12136 610 aaPredicted RBP6.51□□□□□ -1.37
SSL1YLR005W MAK21Q12176 1025 aaKnown RBP6.51□□□□□ -1.37
SSL1YLR005W IRC20Q06554 1556 aa6.51□□□□□ -1.37
SSL1YLR005W MMS1Q06211 1407 aa6.5□□□□□ -1.37
SSL1YLR005W ORC6P38826 435 aa6.5□□□□□ -1.37
SSL1YLR005W VTH1P40438 1549 aa6.5□□□□□ -1.37
SSL1YLR005W VTH2P40890 1549 aa6.5□□□□□ -1.37
SSL1YLR005W GAP1P19145 602 aaPredicted RBP6.49□□□□□ -1.37
SSL1YLR005W ITT1Q04638 464 aa6.49□□□□□ -1.37
SSL1YLR005W TUM1Q08686 304 aaKnown RBP6.49□□□□□ -1.37
SSL1YLR005W STU1P38198 1513 aa6.49□□□□□ -1.37
SSL1YLR005W CSC1Q06538 782 aa6.48□□□□□ -1.37
SSL1YLR005W TSC11P40061 1430 aa6.48□□□□□ -1.37
SSL1YLR005W DNF2Q12675 1612 aa6.46□□□□□ -1.38
SSL1YLR005W DPS1P04802 557 aaKnown RBP6.45□□□□□ -1.38
SSL1YLR005W MVP1P40959 511 aaKnown RBP6.45□□□□□ -1.38
SSL1YLR005W TFB4Q12004 338 aa6.45□□□□□ -1.38
SSL1YLR005W MYO4P32492 1471 aa6.45□□□□□ -1.38
SSL1YLR005W GYP1Q08484 637 aa6.44□□□□□ -1.38
SSL1YLR005W SPB4P25808 606 aaPredicted RBP6.44□□□□□ -1.38
SSL1YLR005W NUP170P38181 1502 aa6.43□□□□□ -1.38
SSL1YLR005W RGR1P19263 1082 aa6.43□□□□□ -1.38
SSL1YLR005W YPR109WQ06104 294 aa6.43□□□□□ -1.38
SSL1YLR005W MAM3Q12296 706 aa6.43□□□□□ -1.38
SSL1YLR005W SPO14P36126 1683 aa6.42□□□□□ -1.38
SSL1YLR005W STR2P47164 639 aa6.42□□□□□ -1.38
SSL1YLR005W ISM1P48526 1002 aa6.42□□□□□ -1.38
SSL1YLR005W BUD20Q08004 166 aaPredicted RBP6.42□□□□□ -1.38
SSL1YLR005W NUD1P32336 851 aa6.41□□□□□ -1.38
SSL1YLR005W DSF2P38213 736 aa6.4□□□□□ -1.39
SSL1YLR005W IES2P40154 320 aa6.39□□□□□ -1.39
SSL1YLR005W SNT2P53127 1403 aa6.39□□□□□ -1.39
SSL1YLR005W SNQ2P32568 1501 aaKnown RBP6.39□□□□□ -1.39
SSL1YLR005W ULS1Q08562 1619 aa6.39□□□□□ -1.39
SSL1YLR005W RAS1P01119 309 aa6.37□□□□□ -1.39
SSL1YLR005W NPL4P33755 580 aa6.37□□□□□ -1.39
SSL1YLR005W PRT1P06103 763 aaKnown RBP6.36□□□□□ -1.39
SSL1YLR005W GCD11P32481 527 aaKnown RBP6.36□□□□□ -1.39
SSL1YLR005W MLP2P40457 1679 aa6.36□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 8.9 ms