RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C REB1P21538 810 aa7.14□□□□□ -1.27
VPS1YKR001C RIA1P53893 1110 aa7.14□□□□□ -1.27
VPS1YKR001C NUP192P47054 1683 aa7.14□□□□□ -1.27
VPS1YKR001C MRX12P47084 519 aa7.13□□□□□ -1.27
VPS1YKR001C YNR029CP53729 429 aaKnown RBP7.13□□□□□ -1.27
VPS1YKR001C TOP1P04786 769 aa7.12□□□□□ -1.27
VPS1YKR001C FAP1P53971 965 aa7.12□□□□□ -1.27
VPS1YKR001C RRP5Q05022 1729 aaKnown RBP7.1□□□□□ -1.27
VPS1YKR001C DEF1P35732 738 aaKnown RBP7.1□□□□□ -1.27
VPS1YKR001C ENT1Q12518 454 aa7.09□□□□□ -1.27
VPS1YKR001C ENV9Q08651 330 aa7.07□□□□□ -1.28
VPS1YKR001C BUD31P25337 157 aaPredicted RBP7.07□□□□□ -1.28
VPS1YKR001C IMH1Q06704 911 aaKnown RBP7.06□□□□□ -1.28
VPS1YKR001C PSH1Q12161 406 aa7.06□□□□□ -1.28
VPS1YKR001C ORC1P54784 914 aaPredicted RBP7.05□□□□□ -1.28
VPS1YKR001C TY3B-IQ7LHG5 1498 aaKnown RBP7.04□□□□□ -1.28
VPS1YKR001C NSR1P27476 414 aaKnown RBP RIP-Chip data7.03□□□□□ -1.28not detected
VPS1YKR001C MDG1P53885 366 aa7.03□□□□□ -1.28
VPS1YKR001C ENV11P53246 860 aa7.01□□□□□ -1.29
VPS1YKR001C RLP24Q07915 199 aaKnown RBP7.01□□□□□ -1.29
VPS1YKR001C CAB1Q04430 367 aa6.98□□□□□ -1.29
VPS1YKR001C IKI3Q06706 1349 aaKnown RBP6.98□□□□□ -1.29
VPS1YKR001C TY4B-HP0C2J7 1802 aa6.98□□□□□ -1.29
VPS1YKR001C TY4B-JP47024 1803 aa6.98□□□□□ -1.29
VPS1YKR001C RAV1P47104 1357 aa6.98□□□□□ -1.29
VPS1YKR001C URB1P34241 1764 aaKnown RBP6.97□□□□□ -1.29
VPS1YKR001C RAD9P14737 1309 aa6.97□□□□□ -1.29
VPS1YKR001C UBP1P25037 809 aa6.96□□□□□ -1.3
VPS1YKR001C ALD4P46367 519 aaKnown RBP6.95□□□□□ -1.3
VPS1YKR001C SSM4P40318 1319 aa6.95□□□□□ -1.3
VPS1YKR001C NUG1P40010 520 aaKnown RBP6.94□□□□□ -1.3
VPS1YKR001C FKS3Q04952 1785 aa6.93□□□□□ -1.3
VPS1YKR001C PRP45P28004 379 aaPredicted RBP6.92□□□□□ -1.3
VPS1YKR001C EDE1P34216 1381 aa6.92□□□□□ -1.3
VPS1YKR001C YBL086CP38177 466 aa6.92□□□□□ -1.3
VPS1YKR001C SSA1P10591 642 aaKnown RBP6.91□□□□□ -1.3
VPS1YKR001C LEU3P08638 886 aa6.91□□□□□ -1.3
VPS1YKR001C PAF1P38351 445 aa6.91□□□□□ -1.3
VPS1YKR001C TCB2P48231 1178 aa6.91□□□□□ -1.3
VPS1YKR001C RTC1Q08281 1341 aa6.9□□□□□ -1.3
VPS1YKR001C TAF5P38129 798 aa6.89□□□□□ -1.31
VPS1YKR001C GTT3P39996 337 aa6.89□□□□□ -1.31
VPS1YKR001C RPN11P43588 306 aaKnown RBP6.89□□□□□ -1.31
VPS1YKR001C NOP53Q12080 455 aaKnown RBP6.89□□□□□ -1.31
VPS1YKR001C GIN4Q12263 1142 aa6.88□□□□□ -1.31
VPS1YKR001C SPT2P06843 333 aaPredicted RBP6.88□□□□□ -1.31
VPS1YKR001C UGA2P38067 497 aa6.88□□□□□ -1.31
VPS1YKR001C HIF1Q12373 385 aa6.87□□□□□ -1.31
VPS1YKR001C RLF2Q12495 606 aa6.87□□□□□ -1.31
VPS1YKR001C CPS1P27614 576 aa6.86□□□□□ -1.31
VPS1YKR001C PSK1P31374 1356 aa6.86□□□□□ -1.31
VPS1YKR001C PRP5P21372 849 aaPredicted RBP6.86□□□□□ -1.31
VPS1YKR001C PLP2Q12017 286 aa6.86□□□□□ -1.31
VPS1YKR001C YRF1-3P0CX14 1859 aa6.85□□□□□ -1.31
VPS1YKR001C YRF1-7P0CX15 1859 aa6.85□□□□□ -1.31
VPS1YKR001C YRF1-6P53819 1859 aa6.85□□□□□ -1.31
VPS1YKR001C SPT7P35177 1332 aa6.85□□□□□ -1.31
VPS1YKR001C HSP82P02829 709 aaKnown RBP6.85□□□□□ -1.31
VPS1YKR001C TOA1P32773 286 aa6.85□□□□□ -1.31
VPS1YKR001C DOT5P40553 215 aa6.85□□□□□ -1.31
VPS1YKR001C ROM2P51862 1356 aaKnown RBP6.84□□□□□ -1.31
VPS1YKR001C SWE1P32944 819 aa6.83□□□□□ -1.32
VPS1YKR001C RPN1P38764 993 aaKnown RBP6.83□□□□□ -1.32
VPS1YKR001C ALD2P47771 506 aa6.83□□□□□ -1.32
VPS1YKR001C SSA2P10592 639 aaKnown RBP6.82□□□□□ -1.32
VPS1YKR001C BRL1P38770 471 aa6.82□□□□□ -1.32
VPS1YKR001C FPR3P38911 411 aaKnown RBP6.82□□□□□ -1.32
VPS1YKR001C NPR2P39923 615 aa6.82□□□□□ -1.32
VPS1YKR001C TIF4632P39936 914 aaKnown RBP6.82□□□□□ -1.32
VPS1YKR001C IES2P40154 320 aa6.82□□□□□ -1.32
VPS1YKR001C RPS0AP32905 252 aaKnown RBP6.82□□□□□ -1.32
VPS1YKR001C LYS4P49367 693 aaPredicted RBP6.82□□□□□ -1.32
VPS1YKR001C RCM1P53972 490 aa6.82□□□□□ -1.32
VPS1YKR001C YJL181WP46987 611 aa6.81□□□□□ -1.32
VPS1YKR001C MSB3P48566 633 aaPredicted RBP6.81□□□□□ -1.32
VPS1YKR001C FOX2Q02207 900 aaKnown RBP6.81□□□□□ -1.32
VPS1YKR001C ADE6P38972 1358 aaKnown RBP6.8□□□□□ -1.32
VPS1YKR001C RSF2P46974 1380 aa6.8□□□□□ -1.32
VPS1YKR001C ENP1P38333 483 aaKnown RBP6.8□□□□□ -1.32
VPS1YKR001C SUB1P54000 292 aaKnown RBP6.8□□□□□ -1.32
VPS1YKR001C NHA1Q99271 985 aa6.8□□□□□ -1.32
VPS1YKR001C PPH3P32345 308 aa6.78□□□□□ -1.32
VPS1YKR001C RRD1P40454 393 aaKnown RBP6.78□□□□□ -1.32
VPS1YKR001C CTH1P47976 325 aa6.78□□□□□ -1.32
VPS1YKR001C TAF8Q03750 510 aa6.78□□□□□ -1.32
VPS1YKR001C YEF3P16521 1044 aaKnown RBP6.77□□□□□ -1.33
VPS1YKR001C PRP40P33203 583 aaKnown RBP6.77□□□□□ -1.33
VPS1YKR001C TLG1Q03322 224 aa6.77□□□□□ -1.33
VPS1YKR001C TCB1Q12466 1186 aa6.77□□□□□ -1.33
VPS1YKR001C LAM6Q08001 693 aa6.76□□□□□ -1.33
VPS1YKR001C SNF2P22082 1703 aa6.76□□□□□ -1.33
VPS1YKR001C DMA2P53924 522 aa6.76□□□□□ -1.33
VPS1YKR001C YIL177CP40434 1758 aa6.75□□□□□ -1.33
VPS1YKR001C YJL225CP40889 1758 aa6.75□□□□□ -1.33
VPS1YKR001C NOP7P53261 605 aaKnown RBP6.75□□□□□ -1.33
VPS1YKR001C VPS72Q03388 795 aa6.75□□□□□ -1.33
VPS1YKR001C APC1P53886 1748 aa6.75□□□□□ -1.33
VPS1YKR001C SPT16P32558 1035 aaKnown RBP6.74□□□□□ -1.33
VPS1YKR001C FPR4Q06205 392 aaPredicted RBP6.74□□□□□ -1.33
VPS1YKR001C QCR6P00127 147 aa6.73□□□□□ -1.33
Retrieved 100 of 5,963 RNA–protein pairs in 15.8 ms