RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	TY1A-ML1	Q04706	440 aa	Known RBP	4.17	□□□□□ -1.74
SNU114	YKL173W	YPR109W	Q06104	294 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-BR	Q12217	440 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-NL2	Q12470	440 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-GR2	Q12485	440 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	AIM7	Q12156	149 aa		4.16	□□□□□ -1.74
SNU114	YKL173W	SDH2	P21801	266 aa		4.16	□□□□□ -1.74
SNU114	YKL173W	ISM1	P48526	1002 aa		4.16	□□□□□ -1.74
SNU114	YKL173W	CLB5	P30283	435 aa		4.15	□□□□□ -1.75
SNU114	YKL173W	NUD1	P32336	851 aa		4.15	□□□□□ -1.75
SNU114	YKL173W	NIS1	P53939	407 aa		4.14	□□□□□ -1.75
SNU114	YKL173W	PEX21	P50091	288 aa		4.13	□□□□□ -1.75
SNU114	YKL173W	AGE1	Q04412	482 aa		4.13	□□□□□ -1.75
SNU114	YKL173W	TEA1	P47988	759 aa		4.12	□□□□□ -1.75
SNU114	YKL173W	GLC3	P32775	704 aa		4.12	□□□□□ -1.75
SNU114	YKL173W	RTF1	P53064	558 aa		4.12	□□□□□ -1.75
SNU114	YKL173W	SAS4	Q04003	481 aa		4.11	□□□□□ -1.75
SNU114	YKL173W	ERF2	Q06551	359 aa		4.11	□□□□□ -1.75
SNU114	YKL173W	RPN1	P38764	993 aa	Known RBP	4.1	□□□□□ -1.75
SNU114	YKL173W	PRT1	P06103	763 aa	Known RBP	4.1	□□□□□ -1.75
SNU114	YKL173W	FPK1	P53739	893 aa		4.1	□□□□□ -1.75
SNU114	YKL173W	HST2	P53686	357 aa		4.09	□□□□□ -1.75
SNU114	YKL173W	KTR1	P27810	393 aa	Known RBP	4.09	□□□□□ -1.75
SNU114	YKL173W	MOD5	P07884	428 aa		4.08	□□□□□ -1.76
SNU114	YKL173W	KEX2	P13134	814 aa		4.08	□□□□□ -1.76
SNU114	YKL173W	YNL115C	P53925	644 aa		4.08	□□□□□ -1.76
SNU114	YKL173W	RSC30	P38781	883 aa		4.07	□□□□□ -1.76
SNU114	YKL173W	KIN1	P13185	1064 aa		4.06	□□□□□ -1.76
SNU114	YKL173W	ATF2	P53296	535 aa		4.05	□□□□□ -1.76
SNU114	YKL173W	TPD3	P31383	635 aa		4.05	□□□□□ -1.76
SNU114	YKL173W	TUB4	P53378	473 aa		4.05	□□□□□ -1.76
SNU114	YKL173W	PAC1	P39946	494 aa	Known RBP	4.04	□□□□□ -1.76
SNU114	YKL173W	SRC1	Q03707	834 aa		4.04	□□□□□ -1.76
SNU114	YKL173W	SCJ1	P25303	377 aa		4.03	□□□□□ -1.76
SNU114	YKL173W	NPL4	P33755	580 aa		4.03	□□□□□ -1.76
SNU114	YKL173W	GYP1	Q08484	637 aa		4.03	□□□□□ -1.76
SNU114	YKL173W	GCD11	P32481	527 aa	Known RBP	4.03	□□□□□ -1.76
SNU114	YKL173W	DMA2	P53924	522 aa		4.03	□□□□□ -1.76
SNU114	YKL173W	RAS1	P01119	309 aa		4.03	□□□□□ -1.77
SNU114	YKL173W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.77	not detected
SNU114	YKL173W	GUA1	P38625	525 aa	Known RBP	4.02	□□□□□ -1.77
SNU114	YKL173W	AMS1	P22855	1083 aa		4.02	□□□□□ -1.77
SNU114	YKL173W	LAM6	Q08001	693 aa		4.01	□□□□□ -1.77
SNU114	YKL173W	DPS1	P04802	557 aa	Known RBP	4.01	□□□□□ -1.77
SNU114	YKL173W	MRF1	P30775	413 aa	Predicted RBP	4.01	□□□□□ -1.77
SNU114	YKL173W	GLN1	P32288	370 aa	Known RBP	4.01	□□□□□ -1.77
SNU114	YKL173W	CST6	P40535	587 aa		4.01	□□□□□ -1.77
SNU114	YKL173W	TYW1	Q08960	810 aa	Known RBP	4.01	□□□□□ -1.77
SNU114	YKL173W	RRN7	P40992	514 aa		4	□□□□□ -1.77
SNU114	YKL173W	CSN12	P47130	423 aa		4	□□□□□ -1.77
SNU114	YKL173W	MMP1	Q12372	583 aa		4	□□□□□ -1.77
SNU114	YKL173W	SLY41	P22215	453 aa		4	□□□□□ -1.77
SNU114	YKL173W	YJU3	P28321	313 aa		4	□□□□□ -1.77
SNU114	YKL173W	HPC2	Q01448	625 aa		4	□□□□□ -1.77
SNU114	YKL173W	ESS1	P22696	170 aa		3.99	□□□□□ -1.77
SNU114	YKL173W	PUS6	P53294	404 aa		3.99	□□□□□ -1.77
SNU114	YKL173W	PDC1	P06169	563 aa	Known RBP	3.98	□□□□□ -1.77
SNU114	YKL173W	TRM1	P15565	570 aa	Known RBP	3.98	□□□□□ -1.77
SNU114	YKL173W	YPR097W	Q06839	1073 aa		3.98	□□□□□ -1.77
SNU114	YKL173W	SPT16	P32558	1035 aa	Known RBP	3.98	□□□□□ -1.77
SNU114	YKL173W	BDP1	P46678	594 aa		3.98	□□□□□ -1.77
SNU114	YKL173W	RPA14	P50106	137 aa		3.98	□□□□□ -1.77
SNU114	YKL173W	YMR196W	Q04336	1088 aa		3.97	□□□□□ -1.77
SNU114	YKL173W	RRD1	P40454	393 aa	Known RBP	3.97	□□□□□ -1.77
SNU114	YKL173W	HXT10	P43581	546 aa		3.97	□□□□□ -1.77
SNU114	YKL173W	SSA2	P10592	639 aa	Known RBP	3.96	□□□□□ -1.78
SNU114	YKL173W	ERG12	P07277	443 aa		3.95	□□□□□ -1.78
SNU114	YKL173W	PAT1	P25644	796 aa	Known RBP	3.95	□□□□□ -1.78
SNU114	YKL173W	CLA4	P48562	842 aa		3.95	□□□□□ -1.78
SNU114	YKL173W	RAD59	Q12223	238 aa		3.95	□□□□□ -1.78
SNU114	YKL173W	YDL206W	Q12424	762 aa		3.95	□□□□□ -1.78
SNU114	YKL173W	YEL077C	Q3E7X8	1277 aa		3.95	□□□□□ -1.78
SNU114	YKL173W	PKH3	Q03306	898 aa	Predicted RBP	3.93	□□□□□ -1.78
SNU114	YKL173W	HED1	Q03937	162 aa		3.93	□□□□□ -1.78
SNU114	YKL173W	YPR084W	Q06821	456 aa		3.93	□□□□□ -1.78
SNU114	YKL173W	VAC17	P25591	423 aa		3.92	□□□□□ -1.78
SNU114	YKL173W	MAK16	P10962	306 aa	Predicted RBP	3.92	□□□□□ -1.78
SNU114	YKL173W	AIR1	P40507	360 aa	Known RBP	3.92	□□□□□ -1.78
SNU114	YKL173W	ALR1	Q08269	859 aa		3.92	□□□□□ -1.78
SNU114	YKL173W	KXD1	P53158	218 aa		3.91	□□□□□ -1.78
SNU114	YKL173W	TFB3	Q03290	321 aa		3.91	□□□□□ -1.78
SNU114	YKL173W	PKC1	P24583	1151 aa		3.91	□□□□□ -1.78
SNU114	YKL173W	CSE4	P36012	229 aa		3.91	□□□□□ -1.78
SNU114	YKL173W	MRT4	P33201	236 aa	Known RBP	3.9	□□□□□ -1.79
SNU114	YKL173W	MET32	Q12041	191 aa		3.9	□□□□□ -1.79
SNU114	YKL173W	FRK1	Q03002	865 aa	Predicted RBP	3.89	□□□□□ -1.79
SNU114	YKL173W	ARG8	P18544	423 aa		3.89	□□□□□ -1.79
SNU114	YKL173W	FIG4	P42837	879 aa		3.89	□□□□□ -1.79
SNU114	YKL173W	APL6	P46682	809 aa		3.89	□□□□□ -1.79
SNU114	YKL173W	NAF1	P53919	492 aa	Known RBP	3.89	□□□□□ -1.79
SNU114	YKL173W	PUS5	Q06244	254 aa		3.89	□□□□□ -1.79
SNU114	YKL173W	CDC4	P07834	779 aa		3.89	□□□□□ -1.79
SNU114	YKL173W	TBF1	Q02457	562 aa		3.88	□□□□□ -1.79
SNU114	YKL173W	SUP45	P12385	437 aa	Known RBP	3.88	□□□□□ -1.79
SNU114	YKL173W	TRK1	P12685	1235 aa		3.87	□□□□□ -1.79
SNU114	YKL173W	RLF2	Q12495	606 aa		3.87	□□□□□ -1.79
SNU114	YKL173W	SYH1	Q02875	849 aa	Known RBP	3.87	□□□□□ -1.79
SNU114	YKL173W	AFT1	P22149	690 aa		3.86	□□□□□ -1.79
SNU114	YKL173W	BIO2	P32451	375 aa		3.86	□□□□□ -1.79
SNU114	YKL173W	EMW1	P42842	904 aa	Known RBP	3.86	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 8.2 ms