RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C SPP1Q03012 353 aa3.13□□□□□ -1.91
UFD4YKL010C FKH1P40466 484 aa3.13□□□□□ -1.91
UFD4YKL010C LTE1P07866 1435 aa3.13□□□□□ -1.91
UFD4YKL010C TY1B-NL2Q99337 1749 aaKnown RBP3.12□□□□□ -1.91
UFD4YKL010C MRM1P25270 412 aa3.12□□□□□ -1.91
UFD4YKL010C AIR2Q12476 344 aaKnown RBP3.11□□□□□ -1.91
UFD4YKL010C IOC4Q04213 475 aa3.11□□□□□ -1.91
UFD4YKL010C MSB4Q12317 492 aa3.11□□□□□ -1.91
UFD4YKL010C NUP157P40064 1391 aaKnown RBP3.11□□□□□ -1.91
UFD4YKL010C RAV1P47104 1357 aa3.11□□□□□ -1.91
UFD4YKL010C MGA2P40578 1113 aa3.11□□□□□ -1.91
UFD4YKL010C MLP1Q02455 1875 aaKnown RBP3.11□□□□□ -1.91
UFD4YKL010C GTT3P39996 337 aa3.11□□□□□ -1.91
UFD4YKL010C APC1P53886 1748 aa3.1□□□□□ -1.91
UFD4YKL010C VPS29P38759 282 aa3.1□□□□□ -1.91
UFD4YKL010C IOC2Q12072 812 aa3.1□□□□□ -1.91
UFD4YKL010C PDR11P40550 1411 aa3.1□□□□□ -1.91
UFD4YKL010C WSC3Q12215 556 aa3.1□□□□□ -1.91
UFD4YKL010C CST9Q06032 482 aa3.09□□□□□ -1.91
UFD4YKL010C YMR1P47147 688 aaKnown RBP RIP-Chip data3.09□□□□□ -1.92not detected
UFD4YKL010C SAM3Q08986 587 aa3.09□□□□□ -1.92
UFD4YKL010C SEC3P33332 1336 aaKnown RBP3.08□□□□□ -1.92
UFD4YKL010C EAP1P36041 632 aaKnown RBP3.07□□□□□ -1.92
UFD4YKL010C SNF2P22082 1703 aa3.07□□□□□ -1.92
UFD4YKL010C RTG3P38165 486 aa3.07□□□□□ -1.92
UFD4YKL010C MET10P39692 1035 aa3.07□□□□□ -1.92
UFD4YKL010C ULI1P43604 169 aa3.07□□□□□ -1.92
UFD4YKL010C RTC1Q08281 1341 aa3.07□□□□□ -1.92
UFD4YKL010C BCK1Q01389 1478 aa3.06□□□□□ -1.92
UFD4YKL010C STS1P38637 319 aa3.06□□□□□ -1.92
UFD4YKL010C YOL036WQ08206 761 aa3.06□□□□□ -1.92
UFD4YKL010C LDB19Q12502 818 aa3.06□□□□□ -1.92
UFD4YKL010C VMA1P17255 1071 aaKnown RBP3.06□□□□□ -1.92
UFD4YKL010C DBP1P24784 617 aaKnown RBP3.06□□□□□ -1.92
UFD4YKL010C SAS10Q12136 610 aaPredicted RBP3.06□□□□□ -1.92
UFD4YKL010C MHP1P43638 1398 aa3.05□□□□□ -1.92
UFD4YKL010C RRP5Q05022 1729 aaKnown RBP3.05□□□□□ -1.92
UFD4YKL010C PIB1Q06651 286 aa3.05□□□□□ -1.92
UFD4YKL010C USO1P25386 1790 aa3.05□□□□□ -1.92
UFD4YKL010C BNR1P40450 1375 aa3.04□□□□□ -1.92
UFD4YKL010C ABP1P15891 592 aaKnown RBP3.03□□□□□ -1.92
UFD4YKL010C YIL177CP40434 1758 aa3.03□□□□□ -1.92
UFD4YKL010C YJL225CP40889 1758 aa3.03□□□□□ -1.92
UFD4YKL010C ENP1P38333 483 aaKnown RBP3.03□□□□□ -1.92
UFD4YKL010C YJL171CP46992 396 aa3.03□□□□□ -1.92
UFD4YKL010C SEC61P32915 480 aa3.03□□□□□ -1.93
UFD4YKL010C TRP5P00931 707 aaKnown RBP3.02□□□□□ -1.93
UFD4YKL010C RCR1P38212 213 aa3.02□□□□□ -1.93
UFD4YKL010C SET4P42948 560 aa3.02□□□□□ -1.93
UFD4YKL010C YNL035CP53962 389 aaKnown RBP3.02□□□□□ -1.93
UFD4YKL010C BMT6Q12291 365 aa3.02□□□□□ -1.93
UFD4YKL010C TY4B-HP0C2J7 1802 aa3.01□□□□□ -1.93
UFD4YKL010C TY4B-JP47024 1803 aa3.01□□□□□ -1.93
UFD4YKL010C YFR006WP43590 535 aa3.01□□□□□ -1.93
UFD4YKL010C RTG1P32607 177 aa3.01□□□□□ -1.93
UFD4YKL010C YRF1-2P40105 1681 aa3□□□□□ -1.93
UFD4YKL010C DRS2P39524 1355 aa3□□□□□ -1.93
UFD4YKL010C DAN4P47179 1161 aa3□□□□□ -1.93
UFD4YKL010C JIP4Q03361 876 aa3□□□□□ -1.93
UFD4YKL010C IFH1P39520 1085 aa2.99□□□□□ -1.93
UFD4YKL010C RTT106P40161 455 aa2.99□□□□□ -1.93
UFD4YKL010C NCR1Q12200 1170 aa2.99□□□□□ -1.93
UFD4YKL010C POL5P39985 1022 aaKnown RBP2.99□□□□□ -1.93
UFD4YKL010C YRF1-4O13559 1382 aa2.99□□□□□ -1.93
UFD4YKL010C YML133CQ03099 1374 aa2.99□□□□□ -1.93
UFD4YKL010C YLL067CQ07888 1374 aa2.99□□□□□ -1.93
UFD4YKL010C YLL066CQ99208 1374 aa2.99□□□□□ -1.93
UFD4YKL010C CFT1Q06632 1357 aaKnown RBP2.99□□□□□ -1.93
UFD4YKL010C FKS3Q04952 1785 aa2.98□□□□□ -1.93
UFD4YKL010C GYP5Q12344 894 aa2.98□□□□□ -1.93
UFD4YKL010C PRS1P32895 427 aaKnown RBP2.97□□□□□ -1.93
UFD4YKL010C URB1P34241 1764 aaKnown RBP2.97□□□□□ -1.93
UFD4YKL010C MAK11P20484 414 aaKnown RBP2.96□□□□□ -1.94
UFD4YKL010C HTA1P04911 132 aaKnown RBP2.96□□□□□ -1.94
UFD4YKL010C HTA2P04912 132 aa2.96□□□□□ -1.94
UFD4YKL010C RAM2P29703 316 aa2.95□□□□□ -1.94
UFD4YKL010C RPP0P05317 312 aaKnown RBP2.95□□□□□ -1.94
UFD4YKL010C PTC4P38089 393 aa2.95□□□□□ -1.94
UFD4YKL010C YDL129WQ07555 291 aa2.95□□□□□ -1.94
UFD4YKL010C BUD21Q08492 214 aaPredicted RBP2.95□□□□□ -1.94
UFD4YKL010C PSK1P31374 1356 aa2.94□□□□□ -1.94
UFD4YKL010C NST1P53935 1240 aa2.94□□□□□ -1.94
UFD4YKL010C SPT7P35177 1332 aa2.94□□□□□ -1.94
UFD4YKL010C NOP53Q12080 455 aaKnown RBP2.94□□□□□ -1.94
UFD4YKL010C YEL023CP39992 682 aa2.93□□□□□ -1.94
UFD4YKL010C NOP2P40991 618 aaKnown RBP2.93□□□□□ -1.94
UFD4YKL010C GRE2Q12068 342 aaKnown RBP2.93□□□□□ -1.94
UFD4YKL010C RQC2Q12532 1038 aaKnown RBP2.93□□□□□ -1.94
UFD4YKL010C SCT1P32784 759 aa2.93□□□□□ -1.94
UFD4YKL010C EDS1P38073 919 aa2.93□□□□□ -1.94
UFD4YKL010C TFG1P41895 735 aaPredicted RBP2.93□□□□□ -1.94
UFD4YKL010C GUT1P32190 709 aa2.92□□□□□ -1.94
UFD4YKL010C DCW1P36091 449 aa2.92□□□□□ -1.94
UFD4YKL010C CHL1P22516 861 aaPredicted RBP2.92□□□□□ -1.94
UFD4YKL010C PTC3P34221 468 aaKnown RBP2.92□□□□□ -1.94
UFD4YKL010C SIR4P11978 1358 aa2.92□□□□□ -1.94
UFD4YKL010C PRE3P38624 215 aa2.91□□□□□ -1.94
UFD4YKL010C ESL2P36168 1195 aa2.91□□□□□ -1.94
UFD4YKL010C SAP30P38429 201 aa2.91□□□□□ -1.94
UFD4YKL010C UTP10P42945 1769 aaKnown RBP2.91□□□□□ -1.94
Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms