RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeastyeast

Gene VPS29, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS29YHR012W BBC1P47068 1157 aa7.39□□□□□ -1.23
VPS29YHR012W YBT1P32386 1661 aa7.38□□□□□ -1.23
VPS29YHR012W YMR196WQ04336 1088 aa7.37□□□□□ -1.23
VPS29YHR012W IPL1P38991 367 aa7.34□□□□□ -1.23
VPS29YHR012W GTT3P39996 337 aa7.34□□□□□ -1.23
VPS29YHR012W BUD21Q08492 214 aaPredicted RBP7.34□□□□□ -1.23
VPS29YHR012W SRB8P25648 1427 aa7.33□□□□□ -1.24
VPS29YHR012W HAP1P0CE41 1502 aa7.3□□□□□ -1.24
VPS29YHR012W USO1P25386 1790 aa7.29□□□□□ -1.24
VPS29YHR012W BMT6Q12291 365 aa7.28□□□□□ -1.24
VPS29YHR012W TY1B-NL2Q99337 1749 aaKnown RBP7.27□□□□□ -1.25
VPS29YHR012W LDB19Q12502 818 aa7.27□□□□□ -1.25
VPS29YHR012W RSM7P47150 247 aa7.26□□□□□ -1.25
VPS29YHR012W AI2P03876 854 aa7.25□□□□□ -1.25
VPS29YHR012W THI12P42883 340 aa7.25□□□□□ -1.25
VPS29YHR012W THI5P43534 340 aa7.25□□□□□ -1.25
VPS29YHR012W THI11P47183 340 aa7.25□□□□□ -1.25
VPS29YHR012W THI13Q07748 340 aa7.25□□□□□ -1.25
VPS29YHR012W TYS1P36421 394 aaKnown RBP7.23□□□□□ -1.25
VPS29YHR012W ULI1P43604 169 aa7.23□□□□□ -1.25
VPS29YHR012W NUP188P52593 1655 aaKnown RBP7.22□□□□□ -1.25
VPS29YHR012W IOC2Q12072 812 aa7.2□□□□□ -1.26
VPS29YHR012W IML1P47170 1584 aa7.19□□□□□ -1.26
VPS29YHR012W VMR1P38735 1592 aa7.18□□□□□ -1.26
VPS29YHR012W YAH1Q12184 172 aaKnown RBP7.17□□□□□ -1.26
VPS29YHR012W EAP1P36041 632 aaKnown RBP7.15□□□□□ -1.26
VPS29YHR012W MSB4Q12317 492 aa7.15□□□□□ -1.26
VPS29YHR012W MRX12P47084 519 aa7.13□□□□□ -1.27
VPS29YHR012W PDR5P33302 1511 aaKnown RBP7.11□□□□□ -1.27
VPS29YHR012W IKI3Q06706 1349 aaKnown RBP7.1□□□□□ -1.27
VPS29YHR012W GLN1P32288 370 aaKnown RBP7.07□□□□□ -1.28
VPS29YHR012W RIA1P53893 1110 aa7.07□□□□□ -1.28
VPS29YHR012W PAF1P38351 445 aa7.06□□□□□ -1.28
VPS29YHR012W PIB1Q06651 286 aa7.06□□□□□ -1.28
VPS29YHR012W RTG1P32607 177 aa7.05□□□□□ -1.28
VPS29YHR012W YNR029CP53729 429 aaKnown RBP7.05□□□□□ -1.28
VPS29YHR012W NCR1Q12200 1170 aa7.05□□□□□ -1.28
VPS29YHR012W CFT1Q06632 1357 aaKnown RBP7.05□□□□□ -1.28
VPS29YHR012W KRE5P22023 1365 aa7.03□□□□□ -1.28
VPS29YHR012W APP1P53933 587 aa7.02□□□□□ -1.29
VPS29YHR012W GCN2P15442 1659 aa7.01□□□□□ -1.29
VPS29YHR012W SEC61P32915 480 aa7.01□□□□□ -1.29
VPS29YHR012W TRP5P00931 707 aaKnown RBP7□□□□□ -1.29
VPS29YHR012W YNL035CP53962 389 aaKnown RBP7□□□□□ -1.29
VPS29YHR012W NAP1P25293 417 aaKnown RBP6.99□□□□□ -1.29
VPS29YHR012W SET4P42948 560 aa6.99□□□□□ -1.29
VPS29YHR012W YOL036WQ08206 761 aa6.99□□□□□ -1.29
VPS29YHR012W PDR11P40550 1411 aa6.99□□□□□ -1.29
VPS29YHR012W BCK1Q01389 1478 aa6.98□□□□□ -1.29
VPS29YHR012W ALD4P46367 519 aaKnown RBP6.98□□□□□ -1.29
VPS29YHR012W YMR074CQ04773 145 aa6.97□□□□□ -1.29
VPS29YHR012W ENT1Q12518 454 aa6.97□□□□□ -1.29
VPS29YHR012W SSM4P40318 1319 aa6.97□□□□□ -1.29
VPS29YHR012W TFG1P41895 735 aaPredicted RBP6.96□□□□□ -1.3
VPS29YHR012W PSD2P53037 1138 aaKnown RBP6.96□□□□□ -1.3
VPS29YHR012W RAV1P47104 1357 aa6.95□□□□□ -1.3
VPS29YHR012W TFA1P36100 482 aa6.95□□□□□ -1.3
VPS29YHR012W CAB1Q04430 367 aa6.95□□□□□ -1.3
VPS29YHR012W MRM1P25270 412 aa6.93□□□□□ -1.3
VPS29YHR012W YLR271WQ06152 274 aa6.93□□□□□ -1.3
VPS29YHR012W ENV9Q08651 330 aa6.93□□□□□ -1.3
VPS29YHR012W RTC1Q08281 1341 aa6.93□□□□□ -1.3
VPS29YHR012W BCK2P33306 851 aa6.92□□□□□ -1.3
VPS29YHR012W IMH1Q06704 911 aaKnown RBP6.92□□□□□ -1.3
VPS29YHR012W NOP7P53261 605 aaKnown RBP6.91□□□□□ -1.3
VPS29YHR012W RAD9P14737 1309 aa6.91□□□□□ -1.3
VPS29YHR012W NUP192P47054 1683 aa6.9□□□□□ -1.31
VPS29YHR012W TAF5P38129 798 aa6.89□□□□□ -1.31
VPS29YHR012W YMR1P47147 688 aaKnown RBP RIP-Chip data6.89□□□□□ -1.31not detected
VPS29YHR012W PRP45P28004 379 aaPredicted RBP6.87□□□□□ -1.31
VPS29YHR012W ESL2P36168 1195 aa6.87□□□□□ -1.31
VPS29YHR012W LEU3P08638 886 aa6.86□□□□□ -1.31
VPS29YHR012W UBP1P25037 809 aa6.86□□□□□ -1.31
VPS29YHR012W CHL1P22516 861 aaPredicted RBP6.85□□□□□ -1.31
VPS29YHR012W DBP1P24784 617 aaKnown RBP6.85□□□□□ -1.31
VPS29YHR012W SAP30P38429 201 aa6.85□□□□□ -1.31
VPS29YHR012W SAM3Q08986 587 aa6.85□□□□□ -1.31
VPS29YHR012W TY3B-IQ7LHG5 1498 aaKnown RBP6.85□□□□□ -1.31
VPS29YHR012W VMA1P17255 1071 aaKnown RBP6.84□□□□□ -1.31
VPS29YHR012W CPS1P27614 576 aa6.84□□□□□ -1.31
VPS29YHR012W JIP4Q03361 876 aa6.84□□□□□ -1.31
VPS29YHR012W TAF8Q03750 510 aa6.83□□□□□ -1.32
VPS29YHR012W PRP5P21372 849 aaPredicted RBP6.82□□□□□ -1.32
VPS29YHR012W YDL129WQ07555 291 aa6.82□□□□□ -1.32
VPS29YHR012W RRP5Q05022 1729 aaKnown RBP6.81□□□□□ -1.32
VPS29YHR012W YRF1-2P40105 1681 aa6.81□□□□□ -1.32
VPS29YHR012W RCM1P53972 490 aa6.8□□□□□ -1.32
VPS29YHR012W SCT1P32784 759 aa6.79□□□□□ -1.32
VPS29YHR012W PRE3P38624 215 aa6.79□□□□□ -1.32
VPS29YHR012W DAN4P47179 1161 aa6.79□□□□□ -1.32
VPS29YHR012W EDE1P34216 1381 aa6.79□□□□□ -1.32
VPS29YHR012W YEF3P16521 1044 aaKnown RBP6.78□□□□□ -1.32
VPS29YHR012W UGA2P38067 497 aa6.78□□□□□ -1.32
VPS29YHR012W RTG3P38165 486 aa6.78□□□□□ -1.32
VPS29YHR012W VPS29P38759 282 aa6.78□□□□□ -1.32
VPS29YHR012W ARP8Q12386 881 aaKnown RBP RIP-Chip data6.78□□□□□ -1.32not detected
VPS29YHR012W YJL181WP46987 611 aa6.77□□□□□ -1.33
VPS29YHR012W IES2P40154 320 aa6.75□□□□□ -1.33
VPS29YHR012W RPN11P43588 306 aaKnown RBP6.75□□□□□ -1.33
VPS29YHR012W TCB1Q12466 1186 aa6.75□□□□□ -1.33
Retrieved 100 of 5,963 RNA–protein pairs in 83.8 ms