RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W GCN2P15442 1659 aa8.62□□□□□ -1.03
RPN11YFR004W KRE5P22023 1365 aa8.61□□□□□ -1.03
RPN11YFR004W OXP1P28273 1286 aa8.61□□□□□ -1.03
RPN11YFR004W PDR11P40550 1411 aa8.61□□□□□ -1.03
RPN11YFR004W YMR074CQ04773 145 aa8.59□□□□□ -1.03
RPN11YFR004W YRF1-2P40105 1681 aa8.57□□□□□ -1.04
RPN11YFR004W NUP192P47054 1683 aa8.57□□□□□ -1.04
RPN11YFR004W YNR029CP53729 429 aaKnown RBP8.57□□□□□ -1.04
RPN11YFR004W MAP2P38174 421 aaKnown RBP8.56□□□□□ -1.04
RPN11YFR004W UBP10P53874 792 aaPredicted RBP8.56□□□□□ -1.04
RPN11YFR004W RIA1P53893 1110 aa8.56□□□□□ -1.04
RPN11YFR004W IKI3Q06706 1349 aaKnown RBP8.54□□□□□ -1.04
RPN11YFR004W MRX12P47084 519 aa8.54□□□□□ -1.04
RPN11YFR004W SSP1P38871 571 aa8.53□□□□□ -1.04
RPN11YFR004W BCH2P36122 765 aa8.51□□□□□ -1.05
RPN11YFR004W SCY1P53009 804 aa8.5□□□□□ -1.05
RPN11YFR004W RRP5Q05022 1729 aaKnown RBP8.5□□□□□ -1.05
RPN11YFR004W ENT1Q12518 454 aa8.5□□□□□ -1.05
RPN11YFR004W SSM4P40318 1319 aa8.49□□□□□ -1.05
RPN11YFR004W ENV9Q08651 330 aa8.48□□□□□ -1.05
RPN11YFR004W TY3B-IQ7LHG5 1498 aaKnown RBP8.47□□□□□ -1.05
RPN11YFR004W BUD31P25337 157 aaPredicted RBP8.47□□□□□ -1.05
RPN11YFR004W IMH1Q06704 911 aaKnown RBP8.46□□□□□ -1.06
RPN11YFR004W RAV1P47104 1357 aa8.42□□□□□ -1.06
RPN11YFR004W RSM7P47150 247 aa8.41□□□□□ -1.06
RPN11YFR004W RAD9P14737 1309 aa8.39□□□□□ -1.07
RPN11YFR004W CAB1Q04430 367 aa8.39□□□□□ -1.07
RPN11YFR004W SLX5P32828 619 aaKnown RBP8.37□□□□□ -1.07
RPN11YFR004W ALD4P46367 519 aaKnown RBP8.37□□□□□ -1.07
RPN11YFR004W TY4B-HP0C2J7 1802 aa8.36□□□□□ -1.07
RPN11YFR004W TY4B-JP47024 1803 aa8.36□□□□□ -1.07
RPN11YFR004W EPS1P40557 701 aa8.34□□□□□ -1.07
RPN11YFR004W BBC1P47068 1157 aa8.34□□□□□ -1.07
RPN11YFR004W URB1P34241 1764 aaKnown RBP8.34□□□□□ -1.07
RPN11YFR004W LEU3P08638 886 aa8.33□□□□□ -1.08
RPN11YFR004W RTC1Q08281 1341 aa8.32□□□□□ -1.08
RPN11YFR004W UBP1P25037 809 aa8.32□□□□□ -1.08
RPN11YFR004W YLR271WQ06152 274 aa8.32□□□□□ -1.08
RPN11YFR004W ARP8Q12386 881 aaKnown RBP RIP-Chip data8.32□□□□□ -1.08not detected
RPN11YFR004W PRP45P28004 379 aaPredicted RBP8.31□□□□□ -1.08
RPN11YFR004W EDE1P34216 1381 aa8.31□□□□□ -1.08
RPN11YFR004W AI2P03876 854 aa8.3□□□□□ -1.08
RPN11YFR004W TIF4632P39936 914 aaKnown RBP8.3□□□□□ -1.08
RPN11YFR004W YBL086CP38177 466 aa8.29□□□□□ -1.08
RPN11YFR004W PAF1P38351 445 aa8.29□□□□□ -1.08
RPN11YFR004W FKS3Q04952 1785 aa8.28□□□□□ -1.08
RPN11YFR004W SSA1P10591 642 aaKnown RBP8.28□□□□□ -1.08
RPN11YFR004W BDF1P35817 686 aa8.28□□□□□ -1.08
RPN11YFR004W CPS1P27614 576 aa8.27□□□□□ -1.09
RPN11YFR004W GTT3P39996 337 aa8.27□□□□□ -1.09
RPN11YFR004W TAF5P38129 798 aa8.26□□□□□ -1.09
RPN11YFR004W RPN11P43588 306 aaKnown RBP8.26□□□□□ -1.09
RPN11YFR004W PSK1P31374 1356 aa8.24□□□□□ -1.09
RPN11YFR004W PRP5P21372 849 aaPredicted RBP8.24□□□□□ -1.09
RPN11YFR004W UGA2P38067 497 aa8.23□□□□□ -1.09
RPN11YFR004W DOT5P40553 215 aa8.23□□□□□ -1.09
RPN11YFR004W ROM2P51862 1356 aaKnown RBP8.22□□□□□ -1.09
RPN11YFR004W NAP1P25293 417 aaKnown RBP8.21□□□□□ -1.1
RPN11YFR004W ADE6P38972 1358 aaKnown RBP8.21□□□□□ -1.1
RPN11YFR004W YRF1-3P0CX14 1859 aa8.2□□□□□ -1.1
RPN11YFR004W YRF1-7P0CX15 1859 aa8.2□□□□□ -1.1
RPN11YFR004W YRF1-6P53819 1859 aa8.2□□□□□ -1.1
RPN11YFR004W RCM1P53972 490 aa8.2□□□□□ -1.1
RPN11YFR004W NPR2P39923 615 aa8.19□□□□□ -1.1
RPN11YFR004W IES2P40154 320 aa8.19□□□□□ -1.1
RPN11YFR004W TGL3P40308 642 aa8.19□□□□□ -1.1
RPN11YFR004W MSB3P48566 633 aaPredicted RBP8.19□□□□□ -1.1
RPN11YFR004W ALD2P47771 506 aa8.18□□□□□ -1.1
RPN11YFR004W LYS4P49367 693 aaPredicted RBP8.18□□□□□ -1.1
RPN11YFR004W FOX2Q02207 900 aaKnown RBP8.18□□□□□ -1.1
RPN11YFR004W RSF2P46974 1380 aa8.18□□□□□ -1.1
RPN11YFR004W SSA2P10592 639 aaKnown RBP8.17□□□□□ -1.1
RPN11YFR004W NSR1P27476 414 aaKnown RBP RIP-Chip data8.16□□□□□ -1.1 RIP-Chip
RPN11YFR004W PPH3P32345 308 aa8.16□□□□□ -1.1
RPN11YFR004W POL5P39985 1022 aaKnown RBP8.16□□□□□ -1.1
RPN11YFR004W TAF8Q03750 510 aa8.16□□□□□ -1.1
RPN11YFR004W CTH1P47976 325 aa8.15□□□□□ -1.1
RPN11YFR004W YJL181WP46987 611 aa8.14□□□□□ -1.11
RPN11YFR004W YEF3P16521 1044 aaKnown RBP8.13□□□□□ -1.11
RPN11YFR004W MGA2P40578 1113 aa8.13□□□□□ -1.11
RPN11YFR004W TCB1Q12466 1186 aa8.13□□□□□ -1.11
RPN11YFR004W PSD2P53037 1138 aaKnown RBP8.12□□□□□ -1.11
RPN11YFR004W NOP7P53261 605 aaKnown RBP8.12□□□□□ -1.11
RPN11YFR004W ESL2P36168 1195 aa8.11□□□□□ -1.11
RPN11YFR004W YIL177CP40434 1758 aa8.1□□□□□ -1.11
RPN11YFR004W YJL225CP40889 1758 aa8.1□□□□□ -1.11
RPN11YFR004W SNF2P22082 1703 aa8.1□□□□□ -1.11
RPN11YFR004W PRP40P33203 583 aaKnown RBP8.1□□□□□ -1.11
RPN11YFR004W LAM6Q08001 693 aa8.1□□□□□ -1.11
RPN11YFR004W SLM3Q12093 417 aa8.1□□□□□ -1.11
RPN11YFR004W APC1P53886 1748 aa8.09□□□□□ -1.11
RPN11YFR004W YKR075CP36155 307 aa8.07□□□□□ -1.12
RPN11YFR004W RRD1P40454 393 aaKnown RBP8.07□□□□□ -1.12
RPN11YFR004W YKL133CP36066 463 aa8.06□□□□□ -1.12
RPN11YFR004W COBP00163 385 aa8.05□□□□□ -1.12
RPN11YFR004W PRP43P53131 767 aaKnown RBP8.05□□□□□ -1.12
RPN11YFR004W CST9Q06032 482 aa8.05□□□□□ -1.12
RPN11YFR004W MRM1P25270 412 aa8.04□□□□□ -1.12
RPN11YFR004W SPT7P35177 1332 aa8.03□□□□□ -1.12
RPN11YFR004W YRF1-4O13559 1382 aa8.02□□□□□ -1.13
Retrieved 100 of 5,963 RNA–protein pairs in 42.9 ms