RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	WSC3	Q12215	556 aa		5.91	□□□□□ -1.46
UBX5	YDR330W	CPS1	P27614	576 aa		5.9	□□□□□ -1.46
UBX5	YDR330W	RPL34A	P87262	121 aa	Predicted RBP	5.9	□□□□□ -1.46
UBX5	YDR330W	JIP4	Q03361	876 aa		5.9	□□□□□ -1.46
UBX5	YDR330W	YJU3	P28321	313 aa		5.89	□□□□□ -1.47
UBX5	YDR330W	TTI1	P36097	1038 aa		5.89	□□□□□ -1.47
UBX5	YDR330W	SPT5	P27692	1063 aa	Known RBP	5.89	□□□□□ -1.47
UBX5	YDR330W	SIS2	P36024	562 aa		5.89	□□□□□ -1.47
UBX5	YDR330W	HIR3	P47171	1648 aa		5.88	□□□□□ -1.47
UBX5	YDR330W	TRP5	P00931	707 aa	Known RBP	5.88	□□□□□ -1.47
UBX5	YDR330W	SUP45	P12385	437 aa	Known RBP	5.87	□□□□□ -1.47
UBX5	YDR330W	LAM6	Q08001	693 aa		5.87	□□□□□ -1.47
UBX5	YDR330W	SLY41	P22215	453 aa		5.86	□□□□□ -1.47
UBX5	YDR330W	DPL1	Q05567	589 aa		5.86	□□□□□ -1.47
UBX5	YDR330W	RTF1	P53064	558 aa		5.85	□□□□□ -1.47
UBX5	YDR330W	MAK16	P10962	306 aa	Predicted RBP	5.84	□□□□□ -1.47
UBX5	YDR330W	YRR1	Q12172	810 aa		5.84	□□□□□ -1.47
UBX5	YDR330W	XRN1	P22147	1528 aa	Known RBP	5.84	□□□□□ -1.47
UBX5	YDR330W	ENO2	P00925	437 aa	Known RBP	5.84	□□□□□ -1.48
UBX5	YDR330W	SLD2	P34252	453 aa		5.84	□□□□□ -1.48
UBX5	YDR330W	YNL115C	P53925	644 aa		5.84	□□□□□ -1.48
UBX5	YDR330W	YBL029C-A	Q3E756	94 aa		5.84	□□□□□ -1.48
UBX5	YDR330W	ENO1	P00924	437 aa	Known RBP	5.83	□□□□□ -1.48
UBX5	YDR330W	YDJ1	P25491	409 aa	Known RBP	5.83	□□□□□ -1.48
UBX5	YDR330W	CDC3	P32457	520 aa	Known RBP	5.83	□□□□□ -1.48
UBX5	YDR330W	RSC30	P38781	883 aa		5.83	□□□□□ -1.48
UBX5	YDR330W	VNX1	P42839	908 aa		5.83	□□□□□ -1.48
UBX5	YDR330W	YPP1	P46951	817 aa		5.83	□□□□□ -1.48
UBX5	YDR330W	NOB1	Q08444	459 aa	Known RBP	5.83	□□□□□ -1.48
UBX5	YDR330W	MPC54	Q08550	464 aa		5.83	□□□□□ -1.48
UBX5	YDR330W	ULI1	P43604	169 aa		5.82	□□□□□ -1.48
UBX5	YDR330W	PEX29	Q03370	554 aa		5.82	□□□□□ -1.48
UBX5	YDR330W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	5.81	□□□□□ -1.48	not detected
UBX5	YDR330W	PML39	Q03760	334 aa		5.81	□□□□□ -1.48
UBX5	YDR330W	ISU2	Q12056	156 aa		5.81	□□□□□ -1.48
UBX5	YDR330W	TIF11	P38912	153 aa	Known RBP	5.8	□□□□□ -1.48
UBX5	YDR330W	MID1	P41821	548 aa		5.8	□□□□□ -1.48
UBX5	YDR330W	RIM21	P48565	533 aa		5.8	□□□□□ -1.48
UBX5	YDR330W	NAF1	P53919	492 aa	Known RBP	5.8	□□□□□ -1.48
UBX5	YDR330W	SPP1	Q03012	353 aa		5.8	□□□□□ -1.48
UBX5	YDR330W	TRM1	P15565	570 aa	Known RBP	5.79	□□□□□ -1.48
UBX5	YDR330W	PUS6	P53294	404 aa		5.79	□□□□□ -1.48
UBX5	YDR330W	YNL035C	P53962	389 aa	Known RBP	5.79	□□□□□ -1.48
UBX5	YDR330W	TBF1	Q02457	562 aa		5.79	□□□□□ -1.48
UBX5	YDR330W	MRX10	Q05648	414 aa		5.79	□□□□□ -1.48
UBX5	YDR330W	PUP1	P25043	261 aa		5.79	□□□□□ -1.48
UBX5	YDR330W	NPL4	P33755	580 aa		5.78	□□□□□ -1.48
UBX5	YDR330W	TGL4	P36165	910 aa		5.78	□□□□□ -1.48
UBX5	YDR330W	REV3	P14284	1504 aa		5.77	□□□□□ -1.49
UBX5	YDR330W	NUD1	P32336	851 aa		5.77	□□□□□ -1.49
UBX5	YDR330W	NMA111	P53920	997 aa		5.77	□□□□□ -1.49
UBX5	YDR330W	KEX2	P13134	814 aa		5.76	□□□□□ -1.49
UBX5	YDR330W	YML083C	Q04526	418 aa		5.76	□□□□□ -1.49
UBX5	YDR330W	DNA2	P38859	1522 aa		5.75	□□□□□ -1.49
UBX5	YDR330W	SSF1	P38789	453 aa	Predicted RBP	5.75	□□□□□ -1.49
UBX5	YDR330W	IOC2	Q12072	812 aa		5.75	□□□□□ -1.49
UBX5	YDR330W	MCM16	Q12262	181 aa		5.75	□□□□□ -1.49
UBX5	YDR330W	SIN3	P22579	1536 aa		5.75	□□□□□ -1.49
UBX5	YDR330W	TFG1	P41895	735 aa	Predicted RBP	5.74	□□□□□ -1.49
UBX5	YDR330W	KOG1	P38873	1557 aa		5.74	□□□□□ -1.49
UBX5	YDR330W	THO2	P53552	1597 aa	Known RBP	5.74	□□□□□ -1.49
UBX5	YDR330W	SEC61	P32915	480 aa		5.74	□□□□□ -1.49
UBX5	YDR330W	RTG1	P32607	177 aa		5.73	□□□□□ -1.49
UBX5	YDR330W	PEP12	P32854	288 aa		5.73	□□□□□ -1.49
UBX5	YDR330W	MRX12	P47084	519 aa		5.73	□□□□□ -1.49
UBX5	YDR330W	HAT1	Q12341	374 aa		5.73	□□□□□ -1.49
UBX5	YDR330W	NOP7	P53261	605 aa	Known RBP	5.72	□□□□□ -1.49
UBX5	YDR330W	ERF2	Q06551	359 aa		5.72	□□□□□ -1.49
UBX5	YDR330W	ENV9	Q08651	330 aa		5.72	□□□□□ -1.49
UBX5	YDR330W	SSK2	P53599	1579 aa		5.71	□□□□□ -1.49
UBX5	YDR330W	KTR7	P40504	517 aa		5.71	□□□□□ -1.5
UBX5	YDR330W	ECM23	Q02710	187 aa		5.71	□□□□□ -1.5
UBX5	YDR330W	YDL206W	Q12424	762 aa		5.71	□□□□□ -1.5
UBX5	YDR330W	ATG3	P40344	310 aa		5.7	□□□□□ -1.5
UBX5	YDR330W	SNU71	P53207	620 aa	Known RBP	5.7	□□□□□ -1.5
UBX5	YDR330W	LDB19	Q12502	818 aa		5.7	□□□□□ -1.5
UBX5	YDR330W	AIM44	Q99299	758 aa		5.7	□□□□□ -1.5
UBX5	YDR330W	RDS2	P19541	446 aa	Known RBP	5.69	□□□□□ -1.5
UBX5	YDR330W	HEM3	P28789	327 aa		5.69	□□□□□ -1.5
UBX5	YDR330W	EMP47	P43555	445 aa		5.69	□□□□□ -1.5
UBX5	YDR330W	YDL129W	Q07555	291 aa		5.69	□□□□□ -1.5
UBX5	YDR330W	PDR1	P12383	1068 aa		5.69	□□□□□ -1.5
UBX5	YDR330W	GAL2	P13181	574 aa		5.69	□□□□□ -1.5
UBX5	YDR330W	ISF1	P32488	338 aa		5.69	□□□□□ -1.5
UBX5	YDR330W	RPA14	P50106	137 aa		5.69	□□□□□ -1.5
UBX5	YDR330W	HAP5	Q02516	242 aa		5.69	□□□□□ -1.5
UBX5	YDR330W	TEC1	P18412	486 aa		5.68	□□□□□ -1.5
UBX5	YDR330W	GCD11	P32481	527 aa	Known RBP	5.68	□□□□□ -1.5
UBX5	YDR330W	STR2	P47164	639 aa		5.68	□□□□□ -1.5
UBX5	YDR330W	ISM1	P48526	1002 aa		5.68	□□□□□ -1.5
UBX5	YDR330W	TUB4	P53378	473 aa		5.68	□□□□□ -1.5
UBX5	YDR330W	SEN54	Q02825	467 aa	Predicted RBP	5.68	□□□□□ -1.5
UBX5	YDR330W	ALR1	Q08269	859 aa		5.68	□□□□□ -1.5
UBX5	YDR330W	ESP1	Q03018	1630 aa		5.67	□□□□□ -1.5
UBX5	YDR330W	TAF2	P23255	1407 aa		5.67	□□□□□ -1.5
UBX5	YDR330W	RAM1	P22007	431 aa		5.67	□□□□□ -1.5
UBX5	YDR330W	GUT2	P32191	649 aa		5.67	□□□□□ -1.5
UBX5	YDR330W	UBX7	P38349	436 aa		5.67	□□□□□ -1.5
UBX5	YDR330W	STM1	P39015	273 aa	Known RBP	5.67	□□□□□ -1.5
UBX5	YDR330W	STE20	Q03497	939 aa	Known RBP	5.67	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 11.5 ms