RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	DRS1	P32892	752 aa	Known RBP	10.38	□□□□□ -0.75
UBX5	YDR330W	MTC1	P47018	478 aa	Known RBP	9.87	□□□□□ -0.83
UBX5	YDR330W	BFR2	Q06631	534 aa	Known RBP	9.19	□□□□□ -0.94
UBX5	YDR330W	TFA1	P36100	482 aa		8.94	□□□□□ -0.98
UBX5	YDR330W	DIP2	Q12220	943 aa	Predicted RBP	8.68	□□□□□ -1.02
UBX5	YDR330W	AVT3	P36062	692 aa		8.66	□□□□□ -1.02
UBX5	YDR330W	RQC2	Q12532	1038 aa	Known RBP	8.16	□□□□□ -1.1
UBX5	YDR330W	FAP1	P53971	965 aa		8.12	□□□□□ -1.11
UBX5	YDR330W	RSE1	Q04693	1361 aa	Known RBP	8.08	□□□□□ -1.12
UBX5	YDR330W	ISW2	Q08773	1120 aa		7.96	□□□□□ -1.14
UBX5	YDR330W	RPG1	P38249	964 aa	Known RBP	7.81	□□□□□ -1.16
UBX5	YDR330W	PRI1	P10363	409 aa		7.75	□□□□□ -1.17
UBX5	YDR330W	RPL17A	P05740	184 aa	Known RBP	7.73	□□□□□ -1.17
UBX5	YDR330W	RPL17B	P46990	184 aa	Known RBP	7.73	□□□□□ -1.17
UBX5	YDR330W	AAD16	Q02895	342 aa		7.68	□□□□□ -1.18
UBX5	YDR330W	REB1	P21538	810 aa		7.62	□□□□□ -1.19
UBX5	YDR330W	PRY3	P47033	881 aa		7.6	□□□□□ -1.19
UBX5	YDR330W	DMA1	P38823	416 aa		7.52	□□□□□ -1.2
UBX5	YDR330W	PTP3	P40048	928 aa		7.51	□□□□□ -1.21
UBX5	YDR330W	RIM101	P33400	625 aa		7.46	□□□□□ -1.22
UBX5	YDR330W	SPT21	P35209	758 aa		7.46	□□□□□ -1.22
UBX5	YDR330W	SSP1	P38871	571 aa		7.36	□□□□□ -1.23
UBX5	YDR330W	TSR3	Q12094	313 aa	Known RBP	7.3	□□□□□ -1.24
UBX5	YDR330W	HAA1	Q12753	694 aa	Known RBP	7.24	□□□□□ -1.25
UBX5	YDR330W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	7.23	□□□□□ -1.25	not detected
UBX5	YDR330W	OXP1	P28273	1286 aa		7.22	□□□□□ -1.25
UBX5	YDR330W	TAF7	Q05021	590 aa		7.22	□□□□□ -1.25
UBX5	YDR330W	YAH1	Q12184	172 aa	Known RBP	7.22	□□□□□ -1.25
UBX5	YDR330W	YIL055C	P40523	627 aa	Known RBP	7.2	□□□□□ -1.26
UBX5	YDR330W	YLR271W	Q06152	274 aa		7.12	□□□□□ -1.27
UBX5	YDR330W	YKR023W	P36119	530 aa	Known RBP	7.11	□□□□□ -1.27
UBX5	YDR330W	LEO1	P38439	464 aa		7.11	□□□□□ -1.27
UBX5	YDR330W	MRPL32	P25348	183 aa		7.09	□□□□□ -1.27
UBX5	YDR330W	YCK3	P39962	524 aa		7.08	□□□□□ -1.28
UBX5	YDR330W	MGA2	P40578	1113 aa		7.06	□□□□□ -1.28
UBX5	YDR330W	RSM7	P47150	247 aa		7.05	□□□□□ -1.28
UBX5	YDR330W	SAS10	Q12136	610 aa	Predicted RBP	6.98	□□□□□ -1.29
UBX5	YDR330W	TFC8	Q12308	588 aa		6.98	□□□□□ -1.29
UBX5	YDR330W	HO	P09932	586 aa		6.97	□□□□□ -1.29
UBX5	YDR330W	LEU3	P08638	886 aa		6.95	□□□□□ -1.3
UBX5	YDR330W	CST9	Q06032	482 aa		6.92	□□□□□ -1.3
UBX5	YDR330W	DCD1	P06773	312 aa		6.9	□□□□□ -1.31
UBX5	YDR330W	AI2	P03876	854 aa		6.89	□□□□□ -1.31
UBX5	YDR330W	PSD2	P53037	1138 aa	Known RBP	6.89	□□□□□ -1.31
UBX5	YDR330W	BBC1	P47068	1157 aa		6.86	□□□□□ -1.31
UBX5	YDR330W	CDC27	P38042	758 aa		6.85	□□□□□ -1.31
UBX5	YDR330W	BCH2	P36122	765 aa		6.8	□□□□□ -1.32
UBX5	YDR330W	YGL015C	P33199	130 aa		6.76	□□□□□ -1.33
UBX5	YDR330W	RPN1	P38764	993 aa	Known RBP	6.74	□□□□□ -1.33
UBX5	YDR330W	RAM2	P29703	316 aa		6.73	□□□□□ -1.33
UBX5	YDR330W	SET1	P38827	1080 aa	Known RBP	6.72	□□□□□ -1.33
UBX5	YDR330W	EPS1	P40557	701 aa		6.72	□□□□□ -1.33
UBX5	YDR330W	MRM1	P25270	412 aa		6.71	□□□□□ -1.34
UBX5	YDR330W	BUD31	P25337	157 aa	Predicted RBP	6.71	□□□□□ -1.34
UBX5	YDR330W	IFH1	P39520	1085 aa		6.71	□□□□□ -1.34
UBX5	YDR330W	CKB1	P43639	278 aa		6.71	□□□□□ -1.34
UBX5	YDR330W	SPB4	P25808	606 aa	Predicted RBP	6.68	□□□□□ -1.34
UBX5	YDR330W	VPS70	P47161	811 aa		6.66	□□□□□ -1.34
UBX5	YDR330W	YPR148C	Q06523	435 aa		6.66	□□□□□ -1.34
UBX5	YDR330W	BDF1	P35817	686 aa		6.66	□□□□□ -1.34
UBX5	YDR330W	RTG3	P38165	486 aa		6.66	□□□□□ -1.34
UBX5	YDR330W	RCR1	P38212	213 aa		6.64	□□□□□ -1.35
UBX5	YDR330W	MAK11	P20484	414 aa	Known RBP	6.62	□□□□□ -1.35
UBX5	YDR330W	SCY1	P53009	804 aa		6.6	□□□□□ -1.35
UBX5	YDR330W	UBP10	P53874	792 aa	Predicted RBP	6.6	□□□□□ -1.35
UBX5	YDR330W	DMA2	P53924	522 aa		6.59	□□□□□ -1.35
UBX5	YDR330W	DSF2	P38213	736 aa		6.54	□□□□□ -1.36
UBX5	YDR330W	PBS2	P08018	668 aa		6.52	□□□□□ -1.37
UBX5	YDR330W	COQ8	P27697	501 aa		6.51	□□□□□ -1.37
UBX5	YDR330W	MAP2	P38174	421 aa	Known RBP	6.51	□□□□□ -1.37
UBX5	YDR330W	VPS29	P38759	282 aa		6.5	□□□□□ -1.37
UBX5	YDR330W	NOP53	Q12080	455 aa	Known RBP	6.5	□□□□□ -1.37
UBX5	YDR330W	SLX5	P32828	619 aa	Known RBP	6.48	□□□□□ -1.37
UBX5	YDR330W	YNR021W	P53723	404 aa	Known RBP	6.48	□□□□□ -1.37
UBX5	YDR330W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	6.46	□□□□□ -1.37	not detected
UBX5	YDR330W	MIF2	P35201	549 aa		6.45	□□□□□ -1.38
UBX5	YDR330W	MAM3	Q12296	706 aa		6.45	□□□□□ -1.38
UBX5	YDR330W	RLF2	Q12495	606 aa		6.45	□□□□□ -1.38
UBX5	YDR330W	REF2	P42073	533 aa	Predicted RBP	6.44	□□□□□ -1.38
UBX5	YDR330W	KIN1	P13185	1064 aa		6.43	□□□□□ -1.38
UBX5	YDR330W	HGH1	P48362	394 aa	Known RBP	6.43	□□□□□ -1.38
UBX5	YDR330W	DBP1	P24784	617 aa	Known RBP	6.4	□□□□□ -1.38
UBX5	YDR330W	STS1	P38637	319 aa		6.4	□□□□□ -1.38
UBX5	YDR330W	IES2	P40154	320 aa		6.4	□□□□□ -1.38
UBX5	YDR330W	AIM7	Q12156	149 aa		6.4	□□□□□ -1.38
UBX5	YDR330W	SGS1	P35187	1447 aa		6.4	□□□□□ -1.39
UBX5	YDR330W	EDS1	P38073	919 aa		6.4	□□□□□ -1.39
UBX5	YDR330W	GLC3	P32775	704 aa		6.39	□□□□□ -1.39
UBX5	YDR330W	MAK21	Q12176	1025 aa	Known RBP	6.39	□□□□□ -1.39
UBX5	YDR330W	YFR006W	P43590	535 aa		6.37	□□□□□ -1.39
UBX5	YDR330W	YOR238W	Q08634	303 aa		6.36	□□□□□ -1.39
UBX5	YDR330W	TIF4632	P39936	914 aa	Known RBP	6.35	□□□□□ -1.39
UBX5	YDR330W	COX6	P00427	148 aa		6.35	□□□□□ -1.39
UBX5	YDR330W	PTC3	P34221	468 aa	Known RBP	6.35	□□□□□ -1.39
UBX5	YDR330W	NUP42	P49686	430 aa	Known RBP	6.35	□□□□□ -1.39
UBX5	YDR330W	DIT2	P21595	489 aa		6.34	□□□□□ -1.39
UBX5	YDR330W	ABP1	P15891	592 aa	Known RBP	6.33	□□□□□ -1.4
UBX5	YDR330W	ATF2	P53296	535 aa		6.33	□□□□□ -1.4
UBX5	YDR330W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	6.3	□□□□□ -1.4	not detected
UBX5	YDR330W	TGL3	P40308	642 aa		6.29	□□□□□ -1.4

Retrieved 100 of 5,963 RNA–protein pairs in 48.2 ms