RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeastyeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIR4YDR227W TGL3P40308 642 aa3.1□□□□□ -1.91
SIR4YDR227W PDR12Q02785 1511 aa3.1□□□□□ -1.91
SIR4YDR227W BCK1Q01389 1478 aa3.1□□□□□ -1.91
SIR4YDR227W ARP8Q12386 881 aaKnown RBP RIP-Chip data3.09□□□□□ -1.91not detected
SIR4YDR227W LEU3P08638 886 aa3.09□□□□□ -1.92
SIR4YDR227W YEF3P16521 1044 aaKnown RBP3.09□□□□□ -1.92
SIR4YDR227W SRF1Q12516 437 aa3.08□□□□□ -1.92
SIR4YDR227W RPL34AP87262 121 aaPredicted RBP3.08□□□□□ -1.92
SIR4YDR227W MAC1P35192 417 aa3.07□□□□□ -1.92
SIR4YDR227W SCT1P32784 759 aa3.07□□□□□ -1.92
SIR4YDR227W MLP2P40457 1679 aa3.07□□□□□ -1.92
SIR4YDR227W AIM21P40563 679 aa3.07□□□□□ -1.92
SIR4YDR227W THI12P42883 340 aa3.07□□□□□ -1.92
SIR4YDR227W THI5P43534 340 aa3.07□□□□□ -1.92
SIR4YDR227W THI11P47183 340 aa3.07□□□□□ -1.92
SIR4YDR227W THI13Q07748 340 aa3.07□□□□□ -1.92
SIR4YDR227W PPG1P32838 368 aa3.06□□□□□ -1.92
SIR4YDR227W BRN1P38170 754 aa3.06□□□□□ -1.92
SIR4YDR227W GLC3P32775 704 aa3.06□□□□□ -1.92
SIR4YDR227W YJL007CP47080 104 aa3.05□□□□□ -1.92
SIR4YDR227W YRB30P53107 440 aaPredicted RBP3.05□□□□□ -1.92
SIR4YDR227W SRB8P25648 1427 aa3.05□□□□□ -1.92
SIR4YDR227W ARO1P08566 1588 aaKnown RBP3.04□□□□□ -1.92
SIR4YDR227W YJL181WP46987 611 aa3.04□□□□□ -1.92
SIR4YDR227W RPO21P04050 1733 aaKnown RBP3.04□□□□□ -1.92
SIR4YDR227W VMR1P38735 1592 aa3.04□□□□□ -1.92
SIR4YDR227W TSC11P40061 1430 aa3.03□□□□□ -1.92
SIR4YDR227W RTT106P40161 455 aa3.03□□□□□ -1.92
SIR4YDR227W ATF2P53296 535 aa3.03□□□□□ -1.92
SIR4YDR227W JIP5Q06214 492 aaPredicted RBP3.03□□□□□ -1.92
SIR4YDR227W PDR11P40550 1411 aa3.03□□□□□ -1.92
SIR4YDR227W SAP155P43612 1002 aa3.03□□□□□ -1.93
SIR4YDR227W ZDS2P54786 942 aa3.03□□□□□ -1.93
SIR4YDR227W CAT8P39113 1433 aa3.02□□□□□ -1.93
SIR4YDR227W POM152P39685 1337 aa3.02□□□□□ -1.93
SIR4YDR227W PRP40P33203 583 aaKnown RBP3.02□□□□□ -1.93
SIR4YDR227W SLD2P34252 453 aa3.02□□□□□ -1.93
SIR4YDR227W SNU71P53207 620 aaKnown RBP3.02□□□□□ -1.93
SIR4YDR227W RSF2P46974 1380 aa3.02□□□□□ -1.93
SIR4YDR227W PDR5P33302 1511 aaKnown RBP3.02□□□□□ -1.93
SIR4YDR227W SIS1P25294 352 aaKnown RBP3.01□□□□□ -1.93
SIR4YDR227W IFH1P39520 1085 aa3.01□□□□□ -1.93
SIR4YDR227W ALD3P54114 506 aa3.01□□□□□ -1.93
SIR4YDR227W RRT14P40470 206 aa3.01□□□□□ -1.93
SIR4YDR227W SUB1P54000 292 aaKnown RBP3.01□□□□□ -1.93
SIR4YDR227W YBT1P32386 1661 aa3.01□□□□□ -1.93
SIR4YDR227W SNQ2P32568 1501 aaKnown RBP3□□□□□ -1.93
SIR4YDR227W POL1P13382 1468 aa3□□□□□ -1.93
SIR4YDR227W VTH1P40438 1549 aa3□□□□□ -1.93
SIR4YDR227W VTH2P40890 1549 aa3□□□□□ -1.93
SIR4YDR227W TRA1P38811 3744 aa3□□□□□ -1.93
SIR4YDR227W SDH2P21801 266 aa2.99□□□□□ -1.93
SIR4YDR227W TSR4P25040 408 aa2.99□□□□□ -1.93
SIR4YDR227W IMH1Q06704 911 aaKnown RBP2.99□□□□□ -1.93
SIR4YDR227W YPR204WQ08995 1032 aa2.99□□□□□ -1.93
SIR4YDR227W OXP1P28273 1286 aa2.99□□□□□ -1.93
SIR4YDR227W VPS72Q03388 795 aa2.99□□□□□ -1.93
SIR4YDR227W RPS9AO13516 197 aaKnown RBP2.98□□□□□ -1.93
SIR4YDR227W BUD21Q08492 214 aaPredicted RBP2.98□□□□□ -1.93
SIR4YDR227W YLL066CQ99208 1374 aa2.98□□□□□ -1.93
SIR4YDR227W YRF1-1P0CX20 1796 aa2.98□□□□□ -1.93
SIR4YDR227W YRF1-5P0CX21 1796 aa2.98□□□□□ -1.93
SIR4YDR227W YRF1-8P0CX22 1796 aa2.98□□□□□ -1.93
SIR4YDR227W KTR7P40504 517 aa2.98□□□□□ -1.93
SIR4YDR227W PUS5Q06244 254 aa2.98□□□□□ -1.93
SIR4YDR227W YSP2Q06681 1438 aa2.98□□□□□ -1.93
SIR4YDR227W NUG1P40010 520 aaKnown RBP2.98□□□□□ -1.93
SIR4YDR227W CPS1P27614 576 aa2.98□□□□□ -1.93
SIR4YDR227W WHI3P34761 661 aaKnown RBP2.98□□□□□ -1.93
SIR4YDR227W RSC30P38781 883 aa2.97□□□□□ -1.93
SIR4YDR227W ROM2P51862 1356 aaKnown RBP2.97□□□□□ -1.93
SIR4YDR227W CST9Q06032 482 aa2.97□□□□□ -1.93
SIR4YDR227W YFL040WP43562 540 aa2.97□□□□□ -1.93
SIR4YDR227W YNR014WP53719 212 aa2.97□□□□□ -1.93
SIR4YDR227W MDG1P53885 366 aa2.97□□□□□ -1.93
SIR4YDR227W HAT1Q12341 374 aa2.97□□□□□ -1.93
SIR4YDR227W PIB1Q06651 286 aa2.96□□□□□ -1.94
SIR4YDR227W TOM1Q03280 3268 aa2.96□□□□□ -1.94
SIR4YDR227W SSA2P10592 639 aaKnown RBP2.96□□□□□ -1.94
SIR4YDR227W CDC27P38042 758 aa2.96□□□□□ -1.94
SIR4YDR227W ALD4P46367 519 aaKnown RBP2.95□□□□□ -1.94
SIR4YDR227W ECM16Q04217 1267 aaKnown RBP2.95□□□□□ -1.94
SIR4YDR227W RRN6P32786 894 aa2.95□□□□□ -1.94
SIR4YDR227W CKB1P43639 278 aa2.95□□□□□ -1.94
SIR4YDR227W LAM6Q08001 693 aa2.95□□□□□ -1.94
SIR4YDR227W YBL086CP38177 466 aa2.94□□□□□ -1.94
SIR4YDR227W GEF1P37020 779 aa2.94□□□□□ -1.94
SIR4YDR227W YLR419WQ06698 1435 aaKnown RBP2.94□□□□□ -1.94
SIR4YDR227W YLR271WQ06152 274 aa2.94□□□□□ -1.94
SIR4YDR227W RCR1P38212 213 aa2.93□□□□□ -1.94
SIR4YDR227W BSD2P38356 321 aa2.93□□□□□ -1.94
SIR4YDR227W IES2P40154 320 aa2.93□□□□□ -1.94
SIR4YDR227W OYE2Q03558 400 aaKnown RBP2.93□□□□□ -1.94
SIR4YDR227W TYW1Q08960 810 aaKnown RBP2.93□□□□□ -1.94
SIR4YDR227W TIF6Q12522 245 aaKnown RBP2.93□□□□□ -1.94
SIR4YDR227W SLX5P32828 619 aaKnown RBP2.93□□□□□ -1.94
SIR4YDR227W ERG12P07277 443 aa2.93□□□□□ -1.94
SIR4YDR227W SPT21P35209 758 aa2.93□□□□□ -1.94
SIR4YDR227W SRP40P32583 406 aaPredicted RBP2.92□□□□□ -1.94
SIR4YDR227W BDF1P35817 686 aa2.92□□□□□ -1.94
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms