RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeastyeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHR3YDL212W TY1A-ER2P0CX66 440 aa8.97□□□□□ -0.97
SHR3YDL212W TY1A-GR3P0CX67 440 aa8.97□□□□□ -0.97
SHR3YDL212W TY1A-LR1P0CX68 440 aa8.97□□□□□ -0.97
SHR3YDL212W TY1A-MR2P0CX69 440 aa8.97□□□□□ -0.97
SHR3YDL212W TY1A-JR2P47099 440 aa8.97□□□□□ -0.97
SHR3YDL212W TY1A-DR1Q03856 440 aa8.97□□□□□ -0.97
SHR3YDL212W TY1A-ML1Q04706 440 aaKnown RBP8.97□□□□□ -0.97
SHR3YDL212W ERF2Q06551 359 aa8.97□□□□□ -0.97
SHR3YDL212W TY1A-BRQ12217 440 aa8.97□□□□□ -0.97
SHR3YDL212W TY1A-NL2Q12470 440 aa8.97□□□□□ -0.97
SHR3YDL212W TY1A-GR2Q12485 440 aa8.97□□□□□ -0.97
SHR3YDL212W KEX2P13134 814 aa8.95□□□□□ -0.98
SHR3YDL212W KIN1P13185 1064 aa8.93□□□□□ -0.98
SHR3YDL212W SEC2P17065 759 aa8.93□□□□□ -0.98
SHR3YDL212W SIT4P20604 311 aa8.93□□□□□ -0.98
SHR3YDL212W NPL4P33755 580 aa8.92□□□□□ -0.98
SHR3YDL212W FPK1P53739 893 aa8.92□□□□□ -0.98
SHR3YDL212W XDJ1P39102 459 aa8.91□□□□□ -0.98
SHR3YDL212W PRT1P06103 763 aaKnown RBP8.9□□□□□ -0.98
SHR3YDL212W GCD11P32481 527 aaKnown RBP8.89□□□□□ -0.99
SHR3YDL212W GYP1Q08484 637 aa8.88□□□□□ -0.99
SHR3YDL212W SDH2P21801 266 aa8.86□□□□□ -0.99
SHR3YDL212W SCJ1P25303 377 aa8.86□□□□□ -0.99
SHR3YDL212W KTR1P27810 393 aaKnown RBP8.86□□□□□ -0.99
SHR3YDL212W RTF1P53064 558 aa8.86□□□□□ -0.99
SHR3YDL212W YMR196WQ04336 1088 aa8.86□□□□□ -0.99
SHR3YDL212W LEO1P38439 464 aa8.85□□□□□ -0.99
SHR3YDL212W HST2P53686 357 aa8.85□□□□□ -0.99
SHR3YDL212W YNL115CP53925 644 aa8.85□□□□□ -0.99
SHR3YDL212W TYW1Q08960 810 aaKnown RBP8.85□□□□□ -0.99
SHR3YDL212W SAS4Q04003 481 aa8.83□□□□□ -1
SHR3YDL212W AGE1Q04412 482 aa8.83□□□□□ -1
SHR3YDL212W RRN7P40992 514 aa8.8□□□□□ -1
SHR3YDL212W MMP1Q12372 583 aa8.8□□□□□ -1
SHR3YDL212W SLY41P22215 453 aa8.79□□□□□ -1
SHR3YDL212W ESS1P22696 170 aa8.79□□□□□ -1
SHR3YDL212W GLN1P32288 370 aaKnown RBP8.79□□□□□ -1
SHR3YDL212W GUA1P38625 525 aaKnown RBP8.79□□□□□ -1
SHR3YDL212W TUB4P53378 473 aa8.79□□□□□ -1
SHR3YDL212W PAC1P39946 494 aaKnown RBP8.78□□□□□ -1
SHR3YDL212W CSN12P47130 423 aa8.78□□□□□ -1
SHR3YDL212W YJU3P28321 313 aa8.77□□□□□ -1.01
SHR3YDL212W SPT16P32558 1035 aaKnown RBP8.74□□□□□ -1.01
SHR3YDL212W RAS1P01119 309 aa8.71□□□□□ -1.02
SHR3YDL212W TRM1P15565 570 aaKnown RBP8.71□□□□□ -1.02
SHR3YDL212W PKH3Q03306 898 aaPredicted RBP8.71□□□□□ -1.02
SHR3YDL212W DPS1P04802 557 aaKnown RBP8.69□□□□□ -1.02
SHR3YDL212W CST6P40535 587 aa8.69□□□□□ -1.02
SHR3YDL212W AMS1P22855 1083 aa8.68□□□□□ -1.02
SHR3YDL212W MRF1P30775 413 aaPredicted RBP8.68□□□□□ -1.02
SHR3YDL212W RSC30P38781 883 aa8.68□□□□□ -1.02
SHR3YDL212W PUS6P53294 404 aa8.68□□□□□ -1.02
SHR3YDL212W SSA2P10592 639 aaKnown RBP8.67□□□□□ -1.02
SHR3YDL212W PAT1P25644 796 aaKnown RBP8.67□□□□□ -1.02
SHR3YDL212W MOD5P07884 428 aa8.66□□□□□ -1.02
SHR3YDL212W BUB1P41695 1021 aaKnown RBP RIP-Chip data8.66□□□□□ -1.02not detected
SHR3YDL212W ERG12P07277 443 aa8.65□□□□□ -1.02
SHR3YDL212W HPC2Q01448 625 aa8.65□□□□□ -1.02
SHR3YDL212W RAD59Q12223 238 aa8.65□□□□□ -1.02
SHR3YDL212W YDL206WQ12424 762 aa8.65□□□□□ -1.02
SHR3YDL212W LAM6Q08001 693 aa8.64□□□□□ -1.03
SHR3YDL212W YEL077CQ3E7X8 1277 aa8.64□□□□□ -1.03
SHR3YDL212W PDC1P06169 563 aaKnown RBP8.63□□□□□ -1.03
SHR3YDL212W TBF1Q02457 562 aa8.63□□□□□ -1.03
SHR3YDL212W ARG8P18544 423 aa8.62□□□□□ -1.03
SHR3YDL212W BDP1P46678 594 aa8.62□□□□□ -1.03
SHR3YDL212W TFB3Q03290 321 aa8.62□□□□□ -1.03
SHR3YDL212W FRK1Q03002 865 aaPredicted RBP8.61□□□□□ -1.03
SHR3YDL212W RPA14P50106 137 aa8.6□□□□□ -1.03
SHR3YDL212W KXD1P53158 218 aa8.59□□□□□ -1.03
SHR3YDL212W YPR097WQ06839 1073 aa8.59□□□□□ -1.03
SHR3YDL212W PKC1P24583 1151 aa8.58□□□□□ -1.04
SHR3YDL212W HXT10P43581 546 aa8.58□□□□□ -1.04
SHR3YDL212W TPD3P31383 635 aa8.57□□□□□ -1.04
SHR3YDL212W RRD1P40454 393 aaKnown RBP8.57□□□□□ -1.04
SHR3YDL212W CLA4P48562 842 aa8.57□□□□□ -1.04
SHR3YDL212W ALR1Q08269 859 aa8.56□□□□□ -1.04
SHR3YDL212W SRC1Q03707 834 aa8.55□□□□□ -1.04
SHR3YDL212W PUS5Q06244 254 aa8.55□□□□□ -1.04
SHR3YDL212W BRL1P38770 471 aa8.54□□□□□ -1.04
SHR3YDL212W DMA2P53924 522 aa8.52□□□□□ -1.05
SHR3YDL212W AIR1P40507 360 aaKnown RBP8.5□□□□□ -1.05
SHR3YDL212W MAK16P10962 306 aaPredicted RBP8.49□□□□□ -1.05
SHR3YDL212W BIO2P32451 375 aa8.47□□□□□ -1.05
SHR3YDL212W YBL036CP38197 257 aa8.47□□□□□ -1.05
SHR3YDL212W FIG4P42837 879 aa8.45□□□□□ -1.06
SHR3YDL212W VAC17P25591 423 aa8.44□□□□□ -1.06
SHR3YDL212W HED1Q03937 162 aa8.44□□□□□ -1.06
SHR3YDL212W CSE4P36012 229 aa8.43□□□□□ -1.06
SHR3YDL212W ITT1Q04638 464 aa8.43□□□□□ -1.06
SHR3YDL212W MET32Q12041 191 aa8.41□□□□□ -1.06
SHR3YDL212W YDJ1P25491 409 aaKnown RBP8.4□□□□□ -1.06
SHR3YDL212W SYH1Q02875 849 aaKnown RBP8.4□□□□□ -1.06
SHR3YDL212W YPR084WQ06821 456 aa8.4□□□□□ -1.06
SHR3YDL212W TRK1P12685 1235 aa8.39□□□□□ -1.07
SHR3YDL212W KIP2P28743 706 aa8.39□□□□□ -1.07
SHR3YDL212W CDC4P07834 779 aa8.38□□□□□ -1.07
SHR3YDL212W TEC1P18412 486 aa8.38□□□□□ -1.07
SHR3YDL212W IXR1P33417 597 aa8.38□□□□□ -1.07
SHR3YDL212W YJL007CP47080 104 aa8.38□□□□□ -1.07
Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms