RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 DIP2BQ9P265 1576 aa27.08■■□□□ 1.93
PTCHD3-202ENST00000622555 PLCH2O75038 1416 aa27.07■■□□□ 1.92
PTCHD3-202ENST00000622555 ZNF777Q9ULD5 760 aaPredicted RBP27.07■■□□□ 1.92
PTCHD3-202ENST00000622555 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.07■■□□□ 1.92
PTCHD3-202ENST00000622555 GLI2P10070 1586 aa27.06■■□□□ 1.92
PTCHD3-202ENST00000622555 CAMSAP2Q08AD1 1489 aa27.05■■□□□ 1.92
PTCHD3-202ENST00000622555 ARAP3Q8WWN8 1544 aa27.04■■□□□ 1.92
PTCHD3-202ENST00000622555 ZNF644Q9H582 1327 aaPredicted RBP27.03■■□□□ 1.92
PTCHD3-202ENST00000622555 CD109Q6YHK3 1445 aa27.03■■□□□ 1.92
PTCHD3-202ENST00000622555 FAM69CQ0P6D2 419 aa27.02■■□□□ 1.92
PTCHD3-202ENST00000622555 MAP3K4Q9Y6R4 1608 aa27.01■■□□□ 1.91
PTCHD3-202ENST00000622555 SAMD9LQ8IVG5 1584 aa27■■□□□ 1.91
PTCHD3-202ENST00000622555 KIF13AQ9H1H9 1805 aa27■■□□□ 1.91
PTCHD3-202ENST00000622555 ITGAEP38570 1179 aa26.99■■□□□ 1.91
PTCHD3-202ENST00000622555 EFCAB2Q5VUJ9 269 aa26.99■■□□□ 1.91
PTCHD3-202ENST00000622555 FANCAO15360 1455 aa26.96■■□□□ 1.91
PTCHD3-202ENST00000622555 DNMT1P26358 1616 aaKnown RBP26.93■■□□□ 1.9
PTCHD3-202ENST00000622555 PLEKHH2Q8IVE3 1493 aa26.92■■□□□ 1.9
PTCHD3-202ENST00000622555 TSPOAP1O95153 1857 aa26.92■■□□□ 1.9
PTCHD3-202ENST00000622555 CFAP74Q9C0B2 1584 aa26.92■■□□□ 1.9
PTCHD3-202ENST00000622555 SYCP2Q9BX26 1530 aa26.9■■□□□ 1.9
PTCHD3-202ENST00000622555 ABCC1P33527 1531 aa26.89■■□□□ 1.89
PTCHD3-202ENST00000622555 DAPK1P53355 1430 aa26.88■■□□□ 1.89
PTCHD3-202ENST00000622555 HNRNPMP52272 730 aaKnown RBP eCLIP26.87■■□□□ 1.89
PTCHD3-202ENST00000622555 ARHGEF5Q12774 1597 aa26.87■■□□□ 1.89
PTCHD3-202ENST00000622555 KIAA1107Q9UPP5 1409 aa26.87■■□□□ 1.89
PTCHD3-202ENST00000622555 ABCC5O15440 1437 aa26.86■■□□□ 1.89
PTCHD3-202ENST00000622555 CROCC2H7BZ55 1655 aa26.86■■□□□ 1.89
PTCHD3-202ENST00000622555 PTPRKQ15262 1439 aa26.86■■□□□ 1.89
PTCHD3-202ENST00000622555 MBD5Q9P267 1494 aa26.85■■□□□ 1.89
PTCHD3-202ENST00000622555 AKNAQ7Z591 1439 aa26.85■■□□□ 1.89
PTCHD3-202ENST00000622555 PPRC1Q5VV67 1664 aaKnown RBP26.85■■□□□ 1.89
PTCHD3-202ENST00000622555 ADGRL1O94910 1474 aa26.84■■□□□ 1.89
PTCHD3-202ENST00000622555 ARHGEF12Q9NZN5 1544 aa26.84■■□□□ 1.89
PTCHD3-202ENST00000622555 NEO1Q92859 1461 aa26.83■■□□□ 1.89
PTCHD3-202ENST00000622555 CCDC141Q6ZP82 1450 aa26.82■■□□□ 1.88
PTCHD3-202ENST00000622555 TEX14Q8IWB6 1497 aa26.8■■□□□ 1.88
PTCHD3-202ENST00000622555 RSPH4AQ5TD94 716 aa26.79■■□□□ 1.88
PTCHD3-202ENST00000622555 CHIC2Q9UKJ5 165 aa26.79■■□□□ 1.88
PTCHD3-202ENST00000622555 SCAPERQ9BY12 1400 aa26.78■■□□□ 1.88
PTCHD3-202ENST00000622555 TRHP20396 242 aaPredicted RBP26.78■■□□□ 1.88
PTCHD3-202ENST00000622555 SHANK2Q9UPX8 1470 aa26.77■■□□□ 1.88
PTCHD3-202ENST00000622555 ADGBQ8N7X0 1667 aa26.76■■□□□ 1.88
PTCHD3-202ENST00000622555 TRAPPC8Q9Y2L5 1435 aa26.76■■□□□ 1.87
PTCHD3-202ENST00000622555 TSPY4P0CV99 314 aa26.75■■□□□ 1.87
PTCHD3-202ENST00000622555 TSPY10P0CW01 314 aa26.75■■□□□ 1.87
PTCHD3-202ENST00000622555 C9orf84Q5VXU9 1444 aa26.74■■□□□ 1.87
PTCHD3-202ENST00000622555 ROCK1Q13464 1354 aa26.7■■□□□ 1.87
PTCHD3-202ENST00000622555 MAST1Q9Y2H9 1570 aa26.7■■□□□ 1.86
PTCHD3-202ENST00000622555 AFAP1Q8N556 730 aa26.69■■□□□ 1.86
PTCHD3-202ENST00000622555 ADGRL2O95490 1459 aa26.69■■□□□ 1.86
PTCHD3-202ENST00000622555 RRP7BPQ9NSQ0 103 aa26.68■■□□□ 1.86
PTCHD3-202ENST00000622555 HFM1A2PYH4 1435 aa26.68■■□□□ 1.86
PTCHD3-202ENST00000622555 POGZQ7Z3K3 1410 aa26.68■■□□□ 1.86
PTCHD3-202ENST00000622555 DENND4BO75064 1496 aaPredicted RBP26.67■■□□□ 1.86
PTCHD3-202ENST00000622555 ZNF518AQ6AHZ1 1483 aa26.67■■□□□ 1.86
PTCHD3-202ENST00000622555 GCC2Q8IWJ2 1684 aa26.67■■□□□ 1.86
PTCHD3-202ENST00000622555 ANKRD30AQ9BXX3 1397 aa26.67■■□□□ 1.86
PTCHD3-202ENST00000622555 SETD5Q9C0A6 1442 aa26.66■■□□□ 1.86
PTCHD3-202ENST00000622555 NCOA1Q15788 1441 aa26.65■■□□□ 1.86
PTCHD3-202ENST00000622555 NAIPQ13075 1403 aa26.64■■□□□ 1.86
PTCHD3-202ENST00000622555 SPAG9O60271 1321 aaKnown RBP26.64■■□□□ 1.86
PTCHD3-202ENST00000622555 RICTORQ6R327 1708 aa26.64■■□□□ 1.85
PTCHD3-202ENST00000622555 KDM5CP41229 1560 aa26.62■■□□□ 1.85
PTCHD3-202ENST00000622555 ZFYVE16Q7Z3T8 1539 aa26.62■■□□□ 1.85
PTCHD3-202ENST00000622555 INO80Q9ULG1 1556 aaPredicted RBP26.61■■□□□ 1.85
PTCHD3-202ENST00000622555 PLXNC1O60486 1568 aa26.61■■□□□ 1.85
PTCHD3-202ENST00000622555 RAPGEF3O95398 923 aa26.6■■□□□ 1.85
PTCHD3-202ENST00000622555 RAB3GAP2Q9H2M9 1393 aa26.6■■□□□ 1.85
PTCHD3-202ENST00000622555 ATP7AQ04656 1500 aa26.6■■□□□ 1.85
PTCHD3-202ENST00000622555 RTEL1-TNFRSF6BF6WH68 1400 aa26.59■■□□□ 1.85
PTCHD3-202ENST00000622555 MYT1LQ9UL68 1186 aa26.58■■□□□ 1.85
PTCHD3-202ENST00000622555 FRMPD1Q5SYB0 1578 aa26.58■■□□□ 1.85
PTCHD3-202ENST00000622555 KIF15Q9NS87 1388 aa26.57■■□□□ 1.84
PTCHD3-202ENST00000622555 HECW2Q9P2P5 1572 aa26.57■■□□□ 1.84
PTCHD3-202ENST00000622555 KIDINS220Q9ULH0 1771 aa26.56■■□□□ 1.84
PTCHD3-202ENST00000622555 KDM6BO15054 1643 aa26.53■■□□□ 1.84
PTCHD3-202ENST00000622555 MLH3Q9UHC1 1453 aa26.53■■□□□ 1.84
PTCHD3-202ENST00000622555 COL17A1Q9UMD9 1497 aaPredicted RBP26.51■■□□□ 1.84
PTCHD3-202ENST00000622555 ZMYM4Q5VZL5 1548 aa26.5■■□□□ 1.83
PTCHD3-202ENST00000622555 ANKRD50Q9ULJ7 1429 aa26.5■■□□□ 1.83
PTCHD3-202ENST00000622555 DUOX2Q9NRD8 1548 aa26.49■■□□□ 1.83
PTCHD3-202ENST00000622555 HRCP23327 699 aa26.48■■□□□ 1.83
PTCHD3-202ENST00000622555 ABCA6Q8N139 1617 aa26.46■■□□□ 1.83
PTCHD3-202ENST00000622555 ERBINQ96RT1 1412 aa26.42■■□□□ 1.82
PTCHD3-202ENST00000622555 MAGI2Q86UL8 1455 aa26.42■■□□□ 1.82
PTCHD3-202ENST00000622555 DIP2CQ9Y2E4 1556 aa26.42■■□□□ 1.82
PTCHD3-202ENST00000622555 YEATS2Q9ULM3 1422 aa26.4■■□□□ 1.82
PTCHD3-202ENST00000622555 A2MP01023 1474 aa26.38■■□□□ 1.81
PTCHD3-202ENST00000622555 DHX29Q7Z478 1369 aaKnown RBP26.38■■□□□ 1.81
PTCHD3-202ENST00000622555 TRIM52Q96A61 297 aa26.37■■□□□ 1.81
PTCHD3-202ENST00000622555 ACIN1Q9UKV3 1341 aaKnown RBP26.37■■□□□ 1.81
PTCHD3-202ENST00000622555 EIF2AK4Q9P2K8 1649 aaKnown RBP26.35■■□□□ 1.81
PTCHD3-202ENST00000622555 CCER1Q8TC90 406 aaPredicted RBP26.34■■□□□ 1.81
PTCHD3-202ENST00000622555 DHX57Q6P158 1386 aaKnown RBP26.33■■□□□ 1.81
PTCHD3-202ENST00000622555 ARHGEF40Q8TER5 1519 aa26.33■■□□□ 1.81
PTCHD3-202ENST00000622555 UNC13BO14795 1591 aa26.32■■□□□ 1.8
PTCHD3-202ENST00000622555 ATP10AO60312 1499 aa26.31■■□□□ 1.8
PTCHD3-202ENST00000622555 KIF3BO15066 747 aa26.28■■□□□ 1.8
PTCHD3-202ENST00000622555 NUP155O75694 1391 aa26.26■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms