RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 EIF5BO60841 1220 aaKnown RBP16.7■□□□□ 0.26
LIG1-221ENST00000613670 FYCO1Q9BQS8 1478 aa16.7■□□□□ 0.26
LIG1-221ENST00000613670 CANXP27824 592 aaKnown RBP16.69■□□□□ 0.26
LIG1-221ENST00000613670 AKNAQ7Z591 1439 aa16.69■□□□□ 0.26
LIG1-221ENST00000613670 RCAN3Q9UKA8 241 aa16.68■□□□□ 0.26
LIG1-221ENST00000613670 EXOC6Q8TAG9 804 aa16.67■□□□□ 0.26
LIG1-221ENST00000613670 PTPRKQ15262 1439 aa16.67■□□□□ 0.26
LIG1-221ENST00000613670 CHMP7Q8WUX9 453 aaPredicted RBP16.65■□□□□ 0.26
LIG1-221ENST00000613670 WDR43Q15061 677 aaKnown RBP eCLIP16.65■□□□□ 0.262e-6■■■■■ 54.5
LIG1-221ENST00000613670 ST20-MTHFSA0A0A6YYL1 179 aa16.65■□□□□ 0.26
LIG1-221ENST00000613670 MAP3K1Q13233 1512 aa16.65■□□□□ 0.26
LIG1-221ENST00000613670 PLEKHD1A6NEE1 506 aa16.64■□□□□ 0.25
LIG1-221ENST00000613670 PLIN1O60240 522 aa16.64■□□□□ 0.25
LIG1-221ENST00000613670 RGS3P49796 1198 aa16.64■□□□□ 0.25
LIG1-221ENST00000613670 USP47Q96K76 1375 aa16.63■□□□□ 0.25
LIG1-221ENST00000613670 ARXQ96QS3 562 aa16.62■□□□□ 0.25
LIG1-221ENST00000613670 AQRO60306 1485 aaKnown RBP eCLIP16.61■□□□□ 0.252e-7■■■■■ 34.2
LIG1-221ENST00000613670 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.61■□□□□ 0.25
LIG1-221ENST00000613670 HMGXB3Q12766 1538 aa16.61■□□□□ 0.25
LIG1-221ENST00000613670 NUP155O75694 1391 aa16.6■□□□□ 0.25
LIG1-221ENST00000613670 PPM1GO15355 546 aaPredicted RBP16.59■□□□□ 0.25
LIG1-221ENST00000613670 TCERG1O14776 1098 aaKnown RBP16.58■□□□□ 0.25
LIG1-221ENST00000613670 PDE4AP27815 886 aa16.58■□□□□ 0.24
LIG1-221ENST00000613670 RRP1P56182 461 aaKnown RBP16.57■□□□□ 0.24
LIG1-221ENST00000613670 DDRGK1Q96HY6 314 aa16.57■□□□□ 0.24
LIG1-221ENST00000613670 SLC4A3P48751 1232 aa16.56■□□□□ 0.24
LIG1-221ENST00000613670 NESP48681 1621 aa16.56■□□□□ 0.24
LIG1-221ENST00000613670 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.55■□□□□ 0.24
LIG1-221ENST00000613670 POLA1P09884 1462 aaPredicted RBP16.55■□□□□ 0.24
LIG1-221ENST00000613670 GAPVD1Q14C86 1478 aa16.54■□□□□ 0.24
LIG1-221ENST00000613670 RALBP1Q15311 655 aa16.54■□□□□ 0.24
LIG1-221ENST00000613670 EFCAB5A4FU69 1503 aa16.53■□□□□ 0.24
LIG1-221ENST00000613670 ROCK2O75116 1388 aaKnown RBP16.53■□□□□ 0.24
LIG1-221ENST00000613670 NLRP13Q86W25 1043 aa16.53■□□□□ 0.24
LIG1-221ENST00000613670 KTN1Q86UP2 1357 aaKnown RBP16.53■□□□□ 0.24
LIG1-221ENST00000613670 KNSTRNQ9Y448 316 aa16.52■□□□□ 0.24
LIG1-221ENST00000613670 MYBBP1AQ9BQG0 1328 aaKnown RBP16.52■□□□□ 0.24
LIG1-221ENST00000613670 PNISRQ8TF01 805 aaKnown RBP16.51■□□□□ 0.23
LIG1-221ENST00000613670 CDCA7LQ96GN5 454 aa16.51■□□□□ 0.23
LIG1-221ENST00000613670 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.51■□□□□ 0.23
LIG1-221ENST00000613670 PTPN23Q9H3S7 1636 aa16.51■□□□□ 0.23
LIG1-221ENST00000613670 KIF15Q9NS87 1388 aa16.5■□□□□ 0.23
LIG1-221ENST00000613670 HNRNPMP52272 730 aaKnown RBP eCLIP16.49■□□□□ 0.23
LIG1-221ENST00000613670 TOPBP1Q92547 1522 aa16.49■□□□□ 0.23
LIG1-221ENST00000613670 CRBNQ96SW2 442 aa16.49■□□□□ 0.23
LIG1-221ENST00000613670 ANKRD30AQ9BXX3 1397 aa16.49■□□□□ 0.23
LIG1-221ENST00000613670 NEUROD2Q15784 382 aa16.48■□□□□ 0.23
LIG1-221ENST00000613670 SKAP1Q86WV1 359 aa16.48■□□□□ 0.23
LIG1-221ENST00000613670 NCOA1Q15788 1441 aa16.48■□□□□ 0.23
LIG1-221ENST00000613670 SMG6Q86US8 1419 aaKnown RBP16.46■□□□□ 0.23
LIG1-221ENST00000613670 CHGAP10645 457 aaKnown RBP16.46■□□□□ 0.22
LIG1-221ENST00000613670 PDS5BQ9NTI5 1447 aa16.45■□□□□ 0.22
LIG1-221ENST00000613670 IL27Q8NEV9 243 aa16.45■□□□□ 0.22
LIG1-221ENST00000613670 TMF1P82094 1093 aa16.45■□□□□ 0.22
LIG1-221ENST00000613670 ANKRD30BQ9BXX2 1392 aa16.45■□□□□ 0.22
LIG1-221ENST00000613670 PANK3Q9H999 370 aa16.44■□□□□ 0.22
LIG1-221ENST00000613670 EHBP1L1Q8N3D4 1523 aa16.43■□□□□ 0.22
LIG1-221ENST00000613670 CDK13Q14004 1512 aaKnown RBP16.43■□□□□ 0.22
LIG1-221ENST00000613670 PDE3BQ13370 1112 aa16.42■□□□□ 0.22
LIG1-221ENST00000613670 FRAT1Q92837 279 aaPredicted RBP16.42■□□□□ 0.22
LIG1-221ENST00000613670 ABCA10Q8WWZ4 1543 aa16.42■□□□□ 0.22
LIG1-221ENST00000613670 UPF2Q9HAU5 1272 aaKnown RBP16.42■□□□□ 0.22
LIG1-221ENST00000613670 TNNT2P45379 298 aaPredicted RBP16.41■□□□□ 0.22
LIG1-221ENST00000613670 SENP3Q9H4L4 574 aaPredicted RBP16.41■□□□□ 0.22
LIG1-221ENST00000613670 SUPT6HQ7KZ85 1726 aaKnown RBP16.41■□□□□ 0.22
LIG1-221ENST00000613670 CCDC146Q8IYE0 955 aa16.4■□□□□ 0.22
LIG1-221ENST00000613670 ANO8Q9HCE9 1232 aaPredicted RBP16.39■□□□□ 0.21
LIG1-221ENST00000613670 DAPK1P53355 1430 aa16.37■□□□□ 0.21
LIG1-221ENST00000613670 NBPF1Q3BBV0 1214 aa16.37■□□□□ 0.21
LIG1-221ENST00000613670 MIA2Q96PC5 1412 aa16.36■□□□□ 0.21
LIG1-221ENST00000613670 CFAP43Q8NDM7 1665 aa16.36■□□□□ 0.21
LIG1-221ENST00000613670 DNMBPQ6XZF7 1577 aa16.36■□□□□ 0.21
LIG1-221ENST00000613670 BACH2Q9BYV9 841 aa16.36■□□□□ 0.21
LIG1-221ENST00000613670 DNAJC5BQ9UF47 199 aa16.35■□□□□ 0.21
LIG1-221ENST00000613670 EPRSP07814 1512 aaKnown RBP16.35■□□□□ 0.21
LIG1-221ENST00000613670 SLKQ9H2G2 1235 aaPredicted RBP16.35■□□□□ 0.21
LIG1-221ENST00000613670 MS4A1P11836 297 aa16.35■□□□□ 0.21
LIG1-221ENST00000613670 BRD4O60885 1362 aaPredicted RBP16.34■□□□□ 0.21
LIG1-221ENST00000613670 RPRD2Q5VT52 1461 aaKnown RBP16.34■□□□□ 0.21
LIG1-221ENST00000613670 ANKRD50Q9ULJ7 1429 aa16.34■□□□□ 0.21
LIG1-221ENST00000613670 GOLGA2Q08379 1002 aa16.34■□□□□ 0.21
LIG1-221ENST00000613670 SPRYD3Q8NCJ5 442 aa16.34■□□□□ 0.21
LIG1-221ENST00000613670 USP35Q9P2H5 1018 aa16.34■□□□□ 0.21
LIG1-221ENST00000613670 BECN1Q14457 450 aa16.33■□□□□ 0.2
LIG1-221ENST00000613670 ARID4BQ4LE39 1312 aaPredicted RBP16.33■□□□□ 0.2
LIG1-221ENST00000613670 PRG4Q92954 1404 aaPredicted RBP16.33■□□□□ 0.2
LIG1-221ENST00000613670 SNAPC4Q5SXM2 1469 aa16.33■□□□□ 0.2
LIG1-221ENST00000613670 ABCC5O15440 1437 aa16.32■□□□□ 0.2
LIG1-221ENST00000613670 JPH4Q96JJ6 628 aa16.32■□□□□ 0.2
LIG1-221ENST00000613670 KIAA1107Q9UPP5 1409 aa16.31■□□□□ 0.2
LIG1-221ENST00000613670 GSE1Q14687 1217 aa16.31■□□□□ 0.2
LIG1-221ENST00000613670 ADAMTS8Q9UP79 889 aa16.31■□□□□ 0.2
LIG1-221ENST00000613670 PRDM2Q13029 1718 aa16.3■□□□□ 0.2
LIG1-221ENST00000613670 CDCA8Q53HL2 280 aa16.3■□□□□ 0.2
LIG1-221ENST00000613670 GRIN2BQ13224 1484 aa16.3■□□□□ 0.2
LIG1-221ENST00000613670 NFKBIBQ15653 356 aa16.3■□□□□ 0.2
LIG1-221ENST00000613670 BRPF3Q9ULD4 1205 aa16.3■□□□□ 0.2
LIG1-221ENST00000613670 CCDC144AA2RUR9 1427 aa16.29■□□□□ 0.2
LIG1-221ENST00000613670 FAM161AQ3B820 660 aa16.28■□□□□ 0.2
LIG1-221ENST00000613670 CC2D2AQ9P2K1 1620 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms