RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 NISCHQ9Y2I1 1504 aa23.41■■□□□ 1.34
LIG1-221ENST00000613670 SHROOM4Q9ULL8 1493 aa21.58■■□□□ 1.05
LIG1-221ENST00000613670 SUPT5HO00267 1087 aaKnown RBP21.58■■□□□ 1.05
LIG1-221ENST00000613670 DCAF8L2P0C7V8 631 aa21.37■■□□□ 1.01
LIG1-221ENST00000613670 PCGF6Q9BYE7 350 aa20.76■□□□□ 0.91
LIG1-221ENST00000613670 HRCP23327 699 aa20.47■□□□□ 0.87
LIG1-221ENST00000613670 CHIC1Q5VXU3 224 aa20.39■□□□□ 0.85
LIG1-221ENST00000613670 EHMT2Q96KQ7 1210 aa20.36■□□□□ 0.85
LIG1-221ENST00000613670 PPARGC1BQ86YN6 1023 aaKnown RBP20.31■□□□□ 0.84
LIG1-221ENST00000613670 LOC105371045A0A1W2PR82 267 aa20.2■□□□□ 0.82
LIG1-221ENST00000613670 FAM9AQ8IZU1 332 aaPredicted RBP20.14■□□□□ 0.82
LIG1-221ENST00000613670 MYO15BQ96JP2 1530 aa19.89■□□□□ 0.77
LIG1-221ENST00000613670 TRIM26Q12899 539 aaPredicted RBP19.88■□□□□ 0.77
LIG1-221ENST00000613670 TRIM41Q8WV44 630 aa19.85■□□□□ 0.77
LIG1-221ENST00000613670 TTBK1Q5TCY1 1321 aaPredicted RBP19.73■□□□□ 0.75
LIG1-221ENST00000613670 ZEB1P37275 1124 aaPredicted RBP19.71■□□□□ 0.75
LIG1-221ENST00000613670 ZCCHC6Q5VYS8 1495 aaKnown RBP19.68■□□□□ 0.74
LIG1-221ENST00000613670 CCER1Q8TC90 406 aaPredicted RBP19.54■□□□□ 0.72
LIG1-221ENST00000613670 PELP1Q8IZL8 1130 aaKnown RBP19.41■□□□□ 0.7
LIG1-221ENST00000613670 DCAF1Q9Y4B6 1507 aa19.41■□□□□ 0.7
LIG1-221ENST00000613670 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.35■□□□□ 0.69
LIG1-221ENST00000613670 CENPBP07199 599 aaPredicted RBP19.26■□□□□ 0.67
LIG1-221ENST00000613670 YTHDC1Q96MU7 727 aaKnown RBP19.21■□□□□ 0.67
LIG1-221ENST00000613670 CCDC180Q9P1Z9 1646 aa19.15■□□□□ 0.66
LIG1-221ENST00000613670 UBTFP17480 764 aaKnown RBP19.14■□□□□ 0.65
LIG1-221ENST00000613670 RANGAP1P46060 587 aaPredicted RBP19.13■□□□□ 0.65
LIG1-221ENST00000613670 SCAF1Q9H7N4 1312 aaKnown RBP19.11■□□□□ 0.65
LIG1-221ENST00000613670 DIEXFQ68CQ4 756 aaKnown RBP19.07■□□□□ 0.64
LIG1-221ENST00000613670 APLP2Q06481 763 aa19.02■□□□□ 0.63
LIG1-221ENST00000613670 GTF3C3Q9Y5Q9 886 aa19■□□□□ 0.63
LIG1-221ENST00000613670 ACIN1Q9UKV3 1341 aaKnown RBP18.94■□□□□ 0.62
LIG1-221ENST00000613670 HNRNPUL2Q1KMD3 747 aaKnown RBP18.92■□□□□ 0.62
LIG1-221ENST00000613670 NEUROD1Q13562 356 aa18.9■□□□□ 0.62
LIG1-221ENST00000613670 SCRIBQ14160 1630 aa18.89■□□□□ 0.62
LIG1-221ENST00000613670 RSF1Q96T23 1441 aaPredicted RBP18.88■□□□□ 0.61
LIG1-221ENST00000613670 ABCC9O60706 1549 aa18.77■□□□□ 0.6
LIG1-221ENST00000613670 ZNF316A6NFI3 1004 aaPredicted RBP18.68■□□□□ 0.58
LIG1-221ENST00000613670 RB1CC1Q8TDY2 1594 aa18.6■□□□□ 0.57
LIG1-221ENST00000613670 MYT1Q01538 1121 aa18.59■□□□□ 0.57
LIG1-221ENST00000613670 CSRNP3Q8WYN3 585 aa18.56■□□□□ 0.56
LIG1-221ENST00000613670 ITGAEP38570 1179 aa18.55■□□□□ 0.56
LIG1-221ENST00000613670 CECR2Q9BXF3 1484 aa18.53■□□□□ 0.56
LIG1-221ENST00000613670 PABPN1Q86U42 306 aaKnown RBP eCLIP18.48■□□□□ 0.552e-6■■■■□ 25.6
LIG1-221ENST00000613670 MIER1Q8N108 512 aa18.47■□□□□ 0.55
LIG1-221ENST00000613670 ATP1B4Q9UN42 357 aaPredicted RBP18.42■□□□□ 0.54
LIG1-221ENST00000613670 CEP162Q5TB80 1403 aa18.39■□□□□ 0.53
LIG1-221ENST00000613670 MROH2BQ7Z745 1585 aa18.34■□□□□ 0.53
LIG1-221ENST00000613670 BCANQ96GW7 911 aa18.27■□□□□ 0.52
LIG1-221ENST00000613670 SOGA1O94964 1423 aa18.26■□□□□ 0.51
LIG1-221ENST00000613670 NEFLP07196 543 aa18.21■□□□□ 0.51
LIG1-221ENST00000613670 CCDC88BA6NC98 1476 aa18.2■□□□□ 0.5
LIG1-221ENST00000613670 ABCC8Q09428 1581 aa18.2■□□□□ 0.5
LIG1-221ENST00000613670 TNIKQ9UKE5 1360 aa18.2■□□□□ 0.5
LIG1-221ENST00000613670 WIZO95785 1651 aa18.17■□□□□ 0.5
LIG1-221ENST00000613670 CLIP1P30622 1438 aa18.12■□□□□ 0.49
LIG1-221ENST00000613670 GOLGA3Q08378 1498 aa18.08■□□□□ 0.48
LIG1-221ENST00000613670 FAM50AQ14320 339 aaKnown RBP18.07■□□□□ 0.48
LIG1-221ENST00000613670 NACADO15069 1562 aa18.06■□□□□ 0.48
LIG1-221ENST00000613670 ERICH6Q7L0X2 663 aa18.03■□□□□ 0.48
LIG1-221ENST00000613670 RUSC2Q8N2Y8 1516 aa18.03■□□□□ 0.48
LIG1-221ENST00000613670 EEA1Q15075 1411 aa18.02■□□□□ 0.48
LIG1-221ENST00000613670 BAZ1AQ9NRL2 1556 aaPredicted RBP18.02■□□□□ 0.47
LIG1-221ENST00000613670 WRNQ14191 1432 aaPredicted RBP eCLIP18.01■□□□□ 0.47
LIG1-221ENST00000613670 DDX10Q13206 875 aaKnown RBP17.97■□□□□ 0.47
LIG1-221ENST00000613670 FKBP8Q14318 412 aa17.95■□□□□ 0.46
LIG1-221ENST00000613670 P3H3Q8IVL6 736 aa17.93■□□□□ 0.46
LIG1-221ENST00000613670 HIRIP3Q9BW71 556 aaPredicted RBP17.92■□□□□ 0.46
LIG1-221ENST00000613670 SUPT16HQ9Y5B9 1047 aaKnown RBP17.92■□□□□ 0.46
LIG1-221ENST00000613670 CEP164Q9UPV0 1460 aa17.9■□□□□ 0.46
LIG1-221ENST00000613670 CNGB1Q14028 1251 aaPredicted RBP17.89■□□□□ 0.45
LIG1-221ENST00000613670 TRIM52Q96A61 297 aa17.87■□□□□ 0.45
LIG1-221ENST00000613670 ANP32CO43423 234 aa17.85■□□□□ 0.45
LIG1-221ENST00000613670 CLSPNQ9HAW4 1339 aa17.83■□□□□ 0.44
LIG1-221ENST00000613670 KANK4Q5T7N3 995 aaPredicted RBP17.83■□□□□ 0.44
LIG1-221ENST00000613670 VPS8Q8N3P4 1428 aa17.82■□□□□ 0.44
LIG1-221ENST00000613670 TOP2AP11388 1531 aaKnown RBP17.79■□□□□ 0.44
LIG1-221ENST00000613670 KCNH8Q96L42 1107 aa17.74■□□□□ 0.43
LIG1-221ENST00000613670 SIN3AQ96ST3 1273 aa17.74■□□□□ 0.43
LIG1-221ENST00000613670 POLR3GLQ9BT43 218 aa17.74■□□□□ 0.43
LIG1-221ENST00000613670 RAPGEF2Q9Y4G8 1499 aa17.7■□□□□ 0.42
LIG1-221ENST00000613670 IRX6P78412 446 aaPredicted RBP17.67■□□□□ 0.42
LIG1-221ENST00000613670 TSHZ2Q9NRE2 1034 aa17.67■□□□□ 0.42
LIG1-221ENST00000613670 SMARCA2P51531 1590 aa17.67■□□□□ 0.42
LIG1-221ENST00000613670 ANP32EQ9BTT0 268 aa17.66■□□□□ 0.42
LIG1-221ENST00000613670 DHX57Q6P158 1386 aaKnown RBP17.66■□□□□ 0.42
LIG1-221ENST00000613670 HNRNPUQ00839 825 aaKnown RBP eCLIP17.65■□□□□ 0.42
LIG1-221ENST00000613670 SMARCA4P51532 1647 aa17.64■□□□□ 0.41
LIG1-221ENST00000613670 BAZ1BQ9UIG0 1483 aaKnown RBP17.62■□□□□ 0.41
LIG1-221ENST00000613670 CCNB3Q8WWL7 1395 aa17.62■□□□□ 0.41
LIG1-221ENST00000613670 CDK11AQ9UQ88 783 aaPredicted RBP17.62■□□□□ 0.41
LIG1-221ENST00000613670 TONSLQ96HA7 1378 aa17.59■□□□□ 0.41
LIG1-221ENST00000613670 ARID3CA6NKF2 412 aa17.55■□□□□ 0.4
LIG1-221ENST00000613670 RAB3GAP2Q9H2M9 1393 aa17.52■□□□□ 0.4
LIG1-221ENST00000613670 KIF27Q86VH2 1401 aa17.51■□□□□ 0.39
LIG1-221ENST00000613670 FAM9BQ8IZU0 186 aa17.5■□□□□ 0.39
LIG1-221ENST00000613670 CHIC2Q9UKJ5 165 aa17.49■□□□□ 0.39
LIG1-221ENST00000613670 RBM19Q9Y4C8 960 aaKnown RBP17.47■□□□□ 0.39
LIG1-221ENST00000613670 ZNF326Q5BKZ1 582 aaKnown RBP17.46■□□□□ 0.39
LIG1-221ENST00000613670 KIF21BO75037 1637 aa17.45■□□□□ 0.38
LIG1-221ENST00000613670 SYNJ1O43426 1573 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms