RNA–Protein interactions for RNA: ENST00000611625.4

CDH1-212, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 4,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-212ENST00000611625 SENP3Q9H4L4 574 aaPredicted RBP16.18■□□□□ 0.18
CDH1-212ENST00000611625 MYH16Q9H6N6 1097 aa16.16■□□□□ 0.18
CDH1-212ENST00000611625 DEKP35659 375 aaKnown RBP16.16■□□□□ 0.18
CDH1-212ENST00000611625 FRAT1Q92837 279 aaPredicted RBP16.15■□□□□ 0.18
CDH1-212ENST00000611625 FTSJ3Q8IY81 847 aaKnown RBP16.14■□□□□ 0.17
CDH1-212ENST00000611625 UACAQ9BZF9 1416 aa16.14■□□□□ 0.17
CDH1-212ENST00000611625 TNNT2P45379 298 aaPredicted RBP16.13■□□□□ 0.17
CDH1-212ENST00000611625 RAD54L2Q9Y4B4 1467 aa16.12■□□□□ 0.17
CDH1-212ENST00000611625 TOP2BQ02880 1626 aa16.12■□□□□ 0.17
CDH1-212ENST00000611625 MYOM3Q5VTT5 1437 aa16.12■□□□□ 0.17
CDH1-212ENST00000611625 ZBED9Q6R2W3 1325 aa16.12■□□□□ 0.17
CDH1-212ENST00000611625 NLRP13Q86W25 1043 aa16.11■□□□□ 0.17
CDH1-212ENST00000611625 TCERG1O14776 1098 aaKnown RBP16.11■□□□□ 0.17
CDH1-212ENST00000611625 CASKIN1Q8WXD9 1431 aa16.09■□□□□ 0.17
CDH1-212ENST00000611625 MAPK8IP3Q9UPT6 1336 aa16.09■□□□□ 0.17
CDH1-212ENST00000611625 KANK1Q14678 1352 aa16.08■□□□□ 0.17
CDH1-212ENST00000611625 CFTRP13569 1480 aa16.08■□□□□ 0.16
CDH1-212ENST00000611625 CUX1P39880 1505 aa16.08■□□□□ 0.16
CDH1-212ENST00000611625 HNRNPMP52272 730 aaKnown RBP eCLIP16.07■□□□□ 0.16
CDH1-212ENST00000611625 KIF15Q9NS87 1388 aa16.07■□□□□ 0.16
CDH1-212ENST00000611625 ST20-MTHFSA0A0A6YYL1 179 aa16.07■□□□□ 0.16
CDH1-212ENST00000611625 GAPVD1Q14C86 1478 aa16.06■□□□□ 0.16
CDH1-212ENST00000611625 PDE3BQ13370 1112 aa16.06■□□□□ 0.16
CDH1-212ENST00000611625 USP47Q96K76 1375 aa16.06■□□□□ 0.16
CDH1-212ENST00000611625 IPO9Q96P70 1041 aaKnown RBP16.05■□□□□ 0.16
CDH1-212ENST00000611625 MYBBP1AQ9BQG0 1328 aaKnown RBP16.04■□□□□ 0.16
CDH1-212ENST00000611625 FYCO1Q9BQS8 1478 aa16.03■□□□□ 0.16
CDH1-212ENST00000611625 CCDC7Q96M83 1385 aa16.03■□□□□ 0.16
CDH1-212ENST00000611625 RTN4Q9NQC3 1192 aaKnown RBP16.03■□□□□ 0.16
CDH1-212ENST00000611625 NCOA2Q15596 1464 aa16.03■□□□□ 0.16
CDH1-212ENST00000611625 MORC1Q86VD1 984 aa16.03■□□□□ 0.16
CDH1-212ENST00000611625 MS4A1P11836 297 aa16.02■□□□□ 0.16
CDH1-212ENST00000611625 U2SURPO15042 1029 aaKnown RBP16.02■□□□□ 0.16
CDH1-212ENST00000611625 JPH4Q96JJ6 628 aa16.02■□□□□ 0.16
CDH1-212ENST00000611625 RSPH4AQ5TD94 716 aa16.02■□□□□ 0.15
CDH1-212ENST00000611625 PLPPR3Q6T4P5 718 aa16.02■□□□□ 0.15
CDH1-212ENST00000611625 EFCAB2Q5VUJ9 269 aa16.01■□□□□ 0.15
CDH1-212ENST00000611625 CNTLNQ9NXG0 1405 aa16.01■□□□□ 0.15
CDH1-212ENST00000611625 POGKQ9P215 609 aa16.01■□□□□ 0.15
CDH1-212ENST00000611625 WASHC2AQ641Q2 1341 aa16■□□□□ 0.15
CDH1-212ENST00000611625 FANCIQ9NVI1 1328 aa16■□□□□ 0.15
CDH1-212ENST00000611625 TIAM1Q13009 1591 aa16■□□□□ 0.15
CDH1-212ENST00000611625 GOLGA6L22H0YM25 854 aa16■□□□□ 0.15
CDH1-212ENST00000611625 KIF7Q2M1P5 1343 aa16■□□□□ 0.15
CDH1-212ENST00000611625 GLIPR1L2Q4G1C9 344 aa15.97■□□□□ 0.15
CDH1-212ENST00000611625 TRIM44Q96DX7 344 aaPredicted RBP15.97■□□□□ 0.15
CDH1-212ENST00000611625 GOLGA2Q08379 1002 aa15.97■□□□□ 0.15
CDH1-212ENST00000611625 CCDC144AA2RUR9 1427 aa15.97■□□□□ 0.15
CDH1-212ENST00000611625 ZNF644Q9H582 1327 aaPredicted RBP15.97■□□□□ 0.15
CDH1-212ENST00000611625 RRP1P56182 461 aaKnown RBP15.95■□□□□ 0.14
CDH1-212ENST00000611625 EFCAB5A4FU69 1503 aa15.94■□□□□ 0.14
CDH1-212ENST00000611625 HMGXB3Q12766 1538 aa15.94■□□□□ 0.14
CDH1-212ENST00000611625 PANK3Q9H999 370 aa15.94■□□□□ 0.14
CDH1-212ENST00000611625 CHMP4BQ9H444 224 aaKnown RBP15.94■□□□□ 0.14
CDH1-212ENST00000611625 EIF3AQ14152 1382 aaKnown RBP15.93■□□□□ 0.14
CDH1-212ENST00000611625 EXOC6Q8TAG9 804 aa15.93■□□□□ 0.14
CDH1-212ENST00000611625 WDR97A6NE52 1622 aa15.93■□□□□ 0.14
CDH1-212ENST00000611625 HFM1A2PYH4 1435 aa15.92■□□□□ 0.14
CDH1-212ENST00000611625 PNNQ9H307 717 aaKnown RBP15.92■□□□□ 0.14
CDH1-212ENST00000611625 SRPK2P78362 688 aaKnown RBP15.92■□□□□ 0.14
CDH1-212ENST00000611625 SAFB2Q14151 953 aaKnown RBP eCLIP15.91■□□□□ 0.14
CDH1-212ENST00000611625 GGT6Q6P531 493 aa15.91■□□□□ 0.14
CDH1-212ENST00000611625 CCDC146Q8IYE0 955 aa15.9■□□□□ 0.14
CDH1-212ENST00000611625 ARID4BQ4LE39 1312 aaPredicted RBP15.9■□□□□ 0.14
CDH1-212ENST00000611625 NCLP19338 710 aaKnown RBP15.89■□□□□ 0.13
CDH1-212ENST00000611625 KIF3BO15066 747 aa15.89■□□□□ 0.13
CDH1-212ENST00000611625 PDE4AP27815 886 aa15.89■□□□□ 0.13
CDH1-212ENST00000611625 CASC1Q6TDU7 716 aa15.89■□□□□ 0.13
CDH1-212ENST00000611625 U2AF1L5P0DN76 240 aaPredicted RBP15.89■□□□□ 0.13
CDH1-212ENST00000611625 U2AF1Q01081 240 aaKnown RBP eCLIP15.89■□□□□ 0.13
CDH1-212ENST00000611625 SPAG9O60271 1321 aaKnown RBP15.89■□□□□ 0.13
CDH1-212ENST00000611625 HSP90AB1P08238 724 aaKnown RBP15.88■□□□□ 0.13
CDH1-212ENST00000611625 PLIN1O60240 522 aa15.88■□□□□ 0.13
CDH1-212ENST00000611625 HSCBQ8IWL3 235 aa15.88■□□□□ 0.13
CDH1-212ENST00000611625 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.88■□□□□ 0.13
CDH1-212ENST00000611625 RWDD1Q9H446 243 aaPredicted RBP15.86■□□□□ 0.13
CDH1-212ENST00000611625 BICRAQ9NZM4 1560 aa15.85■□□□□ 0.13
CDH1-212ENST00000611625 EHBP1L1Q8N3D4 1523 aa15.85■□□□□ 0.13
CDH1-212ENST00000611625 CENPJQ9HC77 1338 aaPredicted RBP15.85■□□□□ 0.13
CDH1-212ENST00000611625 ANKRD50Q9ULJ7 1429 aa15.85■□□□□ 0.13
CDH1-212ENST00000611625 AQRO60306 1485 aaKnown RBP eCLIP15.85■□□□□ 0.13
CDH1-212ENST00000611625 CRBNQ96SW2 442 aa15.84■□□□□ 0.13
CDH1-212ENST00000611625 SPRYD3Q8NCJ5 442 aa15.84■□□□□ 0.13
CDH1-212ENST00000611625 SLKQ9H2G2 1235 aaPredicted RBP15.84■□□□□ 0.13
CDH1-212ENST00000611625 STK26Q9P289 416 aa15.84■□□□□ 0.13
CDH1-212ENST00000611625 PTPRGP23470 1445 aa15.84■□□□□ 0.13
CDH1-212ENST00000611625 C14orf37Q86TY3 774 aa15.84■□□□□ 0.13
CDH1-212ENST00000611625 POLA1P09884 1462 aaPredicted RBP15.83■□□□□ 0.13
CDH1-212ENST00000611625 CENPQQ7L2Z9 268 aaPredicted RBP15.83■□□□□ 0.13
CDH1-212ENST00000611625 PMFBP1Q8TBY8 1022 aa15.83■□□□□ 0.13
CDH1-212ENST00000611625 TOPBP1Q92547 1522 aa15.83■□□□□ 0.12
CDH1-212ENST00000611625 IPO8O15397 1037 aaKnown RBP15.83■□□□□ 0.12
CDH1-212ENST00000611625 L1TD1Q5T7N2 865 aaKnown RBP15.83■□□□□ 0.12
CDH1-212ENST00000611625 NBPF8Q3BBV2 869 aa15.82■□□□□ 0.12
CDH1-212ENST00000611625 MIA2Q96PC5 1412 aa15.81■□□□□ 0.12
CDH1-212ENST00000611625 NAIPQ13075 1403 aa15.8■□□□□ 0.12
CDH1-212ENST00000611625 ITPRIPQ8IWB1 547 aa15.8■□□□□ 0.12
CDH1-212ENST00000611625 CLUAP1Q96AJ1 413 aa15.8■□□□□ 0.12
CDH1-212ENST00000611625 PEG3Q9GZU2 1588 aa15.8■□□□□ 0.12
CDH1-212ENST00000611625 ZBTB7CA1YPR0 619 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms