RNA–Protein interactions for RNA: ENST00000611625.4

CDH1-212, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 4,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-212ENST00000611625 NISCHQ9Y2I1 1504 aa22.21■■□□□ 1.15
CDH1-212ENST00000611625 DCAF8L2P0C7V8 631 aa21.33■■□□□ 1.01
CDH1-212ENST00000611625 SUPT5HO00267 1087 aaKnown RBP20.91■□□□□ 0.94
CDH1-212ENST00000611625 SHROOM4Q9ULL8 1493 aa20.74■□□□□ 0.91
CDH1-212ENST00000611625 EHMT2Q96KQ7 1210 aa19.81■□□□□ 0.76
CDH1-212ENST00000611625 PCGF6Q9BYE7 350 aa19.78■□□□□ 0.76
CDH1-212ENST00000611625 FAM9AQ8IZU1 332 aaPredicted RBP19.58■□□□□ 0.73
CDH1-212ENST00000611625 TRIM41Q8WV44 630 aa19.39■□□□□ 0.69
CDH1-212ENST00000611625 ZEB1P37275 1124 aaPredicted RBP19.29■□□□□ 0.68
CDH1-212ENST00000611625 CHIC1Q5VXU3 224 aa19.25■□□□□ 0.67
CDH1-212ENST00000611625 APLP2Q06481 763 aa19.23■□□□□ 0.67
CDH1-212ENST00000611625 TTBK1Q5TCY1 1321 aaPredicted RBP19.2■□□□□ 0.66
CDH1-212ENST00000611625 HRCP23327 699 aa19.2■□□□□ 0.66
CDH1-212ENST00000611625 TRIM26Q12899 539 aaPredicted RBP19.07■□□□□ 0.64
CDH1-212ENST00000611625 CCER1Q8TC90 406 aaPredicted RBP19.07■□□□□ 0.64
CDH1-212ENST00000611625 LOC105371045A0A1W2PR82 267 aa19.03■□□□□ 0.64
CDH1-212ENST00000611625 PELP1Q8IZL8 1130 aaKnown RBP19■□□□□ 0.63
CDH1-212ENST00000611625 CENPBP07199 599 aaPredicted RBP18.95■□□□□ 0.62
CDH1-212ENST00000611625 UBTFP17480 764 aaKnown RBP18.9■□□□□ 0.62
CDH1-212ENST00000611625 PPARGC1BQ86YN6 1023 aaKnown RBP18.87■□□□□ 0.61
CDH1-212ENST00000611625 RANGAP1P46060 587 aaPredicted RBP18.85■□□□□ 0.61
CDH1-212ENST00000611625 YTHDC1Q96MU7 727 aaKnown RBP18.56■□□□□ 0.56
CDH1-212ENST00000611625 ZCCHC6Q5VYS8 1495 aaKnown RBP18.55■□□□□ 0.56
CDH1-212ENST00000611625 ATP1B4Q9UN42 357 aaPredicted RBP18.48■□□□□ 0.55
CDH1-212ENST00000611625 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.43■□□□□ 0.54
CDH1-212ENST00000611625 HNRNPUL2Q1KMD3 747 aaKnown RBP18.37■□□□□ 0.53
CDH1-212ENST00000611625 ABCC9O60706 1549 aa18.34■□□□□ 0.53
CDH1-212ENST00000611625 DIEXFQ68CQ4 756 aaKnown RBP18.28■□□□□ 0.52
CDH1-212ENST00000611625 CCDC180Q9P1Z9 1646 aa18.26■□□□□ 0.51
CDH1-212ENST00000611625 DCAF1Q9Y4B6 1507 aa18.25■□□□□ 0.51
CDH1-212ENST00000611625 NEFLP07196 543 aa18.23■□□□□ 0.51
CDH1-212ENST00000611625 MYT1Q01538 1121 aa18.22■□□□□ 0.51
CDH1-212ENST00000611625 ITGAEP38570 1179 aa18.22■□□□□ 0.51
CDH1-212ENST00000611625 ERICH6Q7L0X2 663 aa18.15■□□□□ 0.5
CDH1-212ENST00000611625 MYO15BQ96JP2 1530 aa18.14■□□□□ 0.49
CDH1-212ENST00000611625 PABPN1Q86U42 306 aaKnown RBP eCLIP18.08■□□□□ 0.49
CDH1-212ENST00000611625 SCRIBQ14160 1630 aa18.08■□□□□ 0.48
CDH1-212ENST00000611625 CSRNP3Q8WYN3 585 aa17.99■□□□□ 0.47
CDH1-212ENST00000611625 GTF3C3Q9Y5Q9 886 aa17.97■□□□□ 0.47
CDH1-212ENST00000611625 ZNF316A6NFI3 1004 aaPredicted RBP17.94■□□□□ 0.46
CDH1-212ENST00000611625 ACIN1Q9UKV3 1341 aaKnown RBP17.89■□□□□ 0.45
CDH1-212ENST00000611625 RSF1Q96T23 1441 aaPredicted RBP17.83■□□□□ 0.44
CDH1-212ENST00000611625 FAM50AQ14320 339 aaKnown RBP17.83■□□□□ 0.44
CDH1-212ENST00000611625 NEUROD1Q13562 356 aa17.72■□□□□ 0.43
CDH1-212ENST00000611625 POLR3GLQ9BT43 218 aa17.72■□□□□ 0.43
CDH1-212ENST00000611625 CNGB1Q14028 1251 aaPredicted RBP17.61■□□□□ 0.41
CDH1-212ENST00000611625 SCAF1Q9H7N4 1312 aaKnown RBP17.58■□□□□ 0.41
CDH1-212ENST00000611625 BCANQ96GW7 911 aa17.58■□□□□ 0.4
CDH1-212ENST00000611625 TRIM52Q96A61 297 aa17.57■□□□□ 0.4
CDH1-212ENST00000611625 ANP32CO43423 234 aa17.57■□□□□ 0.4
CDH1-212ENST00000611625 RB1CC1Q8TDY2 1594 aa17.53■□□□□ 0.4
CDH1-212ENST00000611625 CEP162Q5TB80 1403 aa17.52■□□□□ 0.39
CDH1-212ENST00000611625 P3H3Q8IVL6 736 aa17.52■□□□□ 0.39
CDH1-212ENST00000611625 EEA1Q15075 1411 aa17.49■□□□□ 0.39
CDH1-212ENST00000611625 NACADO15069 1562 aa17.48■□□□□ 0.39
CDH1-212ENST00000611625 CLIP1P30622 1438 aa17.48■□□□□ 0.39
CDH1-212ENST00000611625 GOLGA3Q08378 1498 aa17.43■□□□□ 0.38
CDH1-212ENST00000611625 CECR2Q9BXF3 1484 aa17.42■□□□□ 0.38
CDH1-212ENST00000611625 CLSPNQ9HAW4 1339 aa17.41■□□□□ 0.38
CDH1-212ENST00000611625 TNIKQ9UKE5 1360 aa17.4■□□□□ 0.38
CDH1-212ENST00000611625 MIER1Q8N108 512 aa17.39■□□□□ 0.38
CDH1-212ENST00000611625 DAXXQ9UER7 740 aaPredicted RBP17.37■□□□□ 0.37
CDH1-212ENST00000611625 WRNQ14191 1432 aaPredicted RBP eCLIP17.36■□□□□ 0.37
CDH1-212ENST00000611625 MYT1LQ9UL68 1186 aa17.36■□□□□ 0.37
CDH1-212ENST00000611625 BAZ1AQ9NRL2 1556 aaPredicted RBP17.33■□□□□ 0.36
CDH1-212ENST00000611625 CDK11AQ9UQ88 783 aaPredicted RBP17.32■□□□□ 0.36
CDH1-212ENST00000611625 ZNF326Q5BKZ1 582 aaKnown RBP17.32■□□□□ 0.36
CDH1-212ENST00000611625 DDX10Q13206 875 aaKnown RBP17.3■□□□□ 0.36
CDH1-212ENST00000611625 TONSLQ96HA7 1378 aa17.29■□□□□ 0.36
CDH1-212ENST00000611625 CEP164Q9UPV0 1460 aa17.27■□□□□ 0.36
CDH1-212ENST00000611625 FKBP8Q14318 412 aa17.26■□□□□ 0.35
CDH1-212ENST00000611625 ARID3CA6NKF2 412 aa17.25■□□□□ 0.35
CDH1-212ENST00000611625 MROH2BQ7Z745 1585 aa17.25■□□□□ 0.35
CDH1-212ENST00000611625 RTL5Q5HYW3 569 aaPredicted RBP17.25■□□□□ 0.35
CDH1-212ENST00000611625 SOGA1O94964 1423 aa17.21■□□□□ 0.35
CDH1-212ENST00000611625 BAZ1BQ9UIG0 1483 aaKnown RBP17.17■□□□□ 0.34
CDH1-212ENST00000611625 FBLN2P98095 1184 aa17.15■□□□□ 0.34
CDH1-212ENST00000611625 HNRNPUQ00839 825 aaKnown RBP eCLIP17.15■□□□□ 0.34
CDH1-212ENST00000611625 SLC4A1APQ9BWU0 796 aaKnown RBP17.1■□□□□ 0.33
CDH1-212ENST00000611625 ABCC8Q09428 1581 aa17.1■□□□□ 0.33
CDH1-212ENST00000611625 MTUS2Q5JR59 1369 aa17.1■□□□□ 0.33
CDH1-212ENST00000611625 CCDC88BA6NC98 1476 aa17.09■□□□□ 0.33
CDH1-212ENST00000611625 KIF27Q86VH2 1401 aa17.09■□□□□ 0.33
CDH1-212ENST00000611625 ZNF777Q9ULD5 760 aaPredicted RBP17.09■□□□□ 0.33
CDH1-212ENST00000611625 CHIC2Q9UKJ5 165 aa17.08■□□□□ 0.32
CDH1-212ENST00000611625 HIRIP3Q9BW71 556 aaPredicted RBP17.07■□□□□ 0.32
CDH1-212ENST00000611625 FAM9BQ8IZU0 186 aa17.03■□□□□ 0.32
CDH1-212ENST00000611625 WIZO95785 1651 aa17.03■□□□□ 0.32
CDH1-212ENST00000611625 VPS8Q8N3P4 1428 aa17.02■□□□□ 0.32
CDH1-212ENST00000611625 ANP32AP39687 249 aaKnown RBP16.97■□□□□ 0.31
CDH1-212ENST00000611625 CCNB3Q8WWL7 1395 aa16.96■□□□□ 0.31
CDH1-212ENST00000611625 TOP2AP11388 1531 aaKnown RBP16.95■□□□□ 0.3
CDH1-212ENST00000611625 MRS2Q9HD23 443 aa16.94■□□□□ 0.3
CDH1-212ENST00000611625 RRP7BPQ9NSQ0 103 aa16.93■□□□□ 0.3
CDH1-212ENST00000611625 EIF4G2P78344 907 aaKnown RBP eCLIP16.92■□□□□ 0.3
CDH1-212ENST00000611625 SIN3AQ96ST3 1273 aa16.91■□□□□ 0.3
CDH1-212ENST00000611625 IRX6P78412 446 aaPredicted RBP16.88■□□□□ 0.29
CDH1-212ENST00000611625 TMC1Q8TDI8 760 aa16.86■□□□□ 0.29
CDH1-212ENST00000611625 KANK4Q5T7N3 995 aaPredicted RBP16.85■□□□□ 0.29
CDH1-212ENST00000611625 NPM2Q86SE8 214 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms