RNA–Protein interactions for RNA: ENST00000607055.1

NECAB3-221, Transcript of N-terminal EF-hand calcium binding protein 3, human

TSL 4

Gene NECAB3, Length 554 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAB3-221	ENST00000607055	ITSN2	Q9NZM3	1697 aa		33.43	■■■□□ 2.94
NECAB3-221	ENST00000607055	CDC42BPB	Q9Y5S2	1711 aa		33.43	■■■□□ 2.94
NECAB3-221	ENST00000607055	FANCA	O15360	1455 aa		33.43	■■■□□ 2.94
NECAB3-221	ENST00000607055	EFCAB2	Q5VUJ9	269 aa		33.42	■■■□□ 2.94
NECAB3-221	ENST00000607055	CFDP1	Q9UEE9	299 aa	Predicted RBP	33.42	■■■□□ 2.94
NECAB3-221	ENST00000607055	MYOM3	Q5VTT5	1437 aa		33.41	■■■□□ 2.94
NECAB3-221	ENST00000607055	ZNF777	Q9ULD5	760 aa	Predicted RBP	33.38	■■■□□ 2.93
NECAB3-221	ENST00000607055	NEO1	Q92859	1461 aa		33.37	■■■□□ 2.93
NECAB3-221	ENST00000607055	CFAP74	Q9C0B2	1584 aa		33.36	■■■□□ 2.93
NECAB3-221	ENST00000607055	AKNA	Q7Z591	1439 aa		33.33	■■■□□ 2.93
NECAB3-221	ENST00000607055	MIA2	Q96PC5	1412 aa		33.3	■■■□□ 2.92
NECAB3-221	ENST00000607055	ZNF644	Q9H582	1327 aa	Predicted RBP	33.28	■■■□□ 2.92
NECAB3-221	ENST00000607055	FGD6	Q6ZV73	1430 aa		33.28	■■■□□ 2.92
NECAB3-221	ENST00000607055	SAMD9L	Q8IVG5	1584 aa		33.28	■■■□□ 2.92
NECAB3-221	ENST00000607055	ADGRL1	O94910	1474 aa		33.27	■■■□□ 2.92
NECAB3-221	ENST00000607055	CAMSAP2	Q08AD1	1489 aa		33.24	■■■□□ 2.91
NECAB3-221	ENST00000607055	SCAPER	Q9BY12	1400 aa		33.23	■■■□□ 2.91
NECAB3-221	ENST00000607055	ABCC1	P33527	1531 aa		33.22	■■■□□ 2.91
NECAB3-221	ENST00000607055	PLEKHH2	Q8IVE3	1493 aa		33.21	■■■□□ 2.91
NECAB3-221	ENST00000607055	PTPN23	Q9H3S7	1636 aa		33.2	■■■□□ 2.91
NECAB3-221	ENST00000607055	COL17A1	Q9UMD9	1497 aa	Predicted RBP	33.18	■■■□□ 2.9
NECAB3-221	ENST00000607055	SYCP2	Q9BX26	1530 aa		33.18	■■■□□ 2.9
NECAB3-221	ENST00000607055	ARHGEF12	Q9NZN5	1544 aa		33.18	■■■□□ 2.9
NECAB3-221	ENST00000607055	KDM6B	O15054	1643 aa		33.17	■■■□□ 2.9
NECAB3-221	ENST00000607055	HNRNPM	P52272	730 aa	Known RBP eCLIP	33.17	■■■□□ 2.9
NECAB3-221	ENST00000607055	DENND4B	O75064	1496 aa	Predicted RBP	33.17	■■■□□ 2.9
NECAB3-221	ENST00000607055	KIAA1107	Q9UPP5	1409 aa		33.16	■■■□□ 2.9
NECAB3-221	ENST00000607055	TCOF1	Q13428	1488 aa	Known RBP	33.16	■■■□□ 2.9
NECAB3-221	ENST00000607055	FAM50A	Q14320	339 aa	Known RBP	33.15	■■■□□ 2.9
NECAB3-221	ENST00000607055	RAPGEF3	O95398	923 aa		33.13	■■■□□ 2.89
NECAB3-221	ENST00000607055	POGZ	Q7Z3K3	1410 aa		33.11	■■■□□ 2.89
NECAB3-221	ENST00000607055	TRAPPC8	Q9Y2L5	1435 aa		33.11	■■■□□ 2.89
NECAB3-221	ENST00000607055	RRBP1	Q9P2E9	1410 aa	Known RBP	33.1	■■■□□ 2.89
NECAB3-221	ENST00000607055	MBD5	Q9P267	1494 aa		33.09	■■■□□ 2.89
NECAB3-221	ENST00000607055	AFAP1	Q8N556	730 aa		33.07	■■■□□ 2.88
NECAB3-221	ENST00000607055	FRMPD1	Q5SYB0	1578 aa		33.06	■■■□□ 2.88
NECAB3-221	ENST00000607055	ZNF518A	Q6AHZ1	1483 aa		33.05	■■■□□ 2.88
NECAB3-221	ENST00000607055	RICTOR	Q6R327	1708 aa		33.05	■■■□□ 2.88
NECAB3-221	ENST00000607055	CCDC141	Q6ZP82	1450 aa		33.03	■■■□□ 2.88
NECAB3-221	ENST00000607055	ARHGEF5	Q12774	1597 aa		33.03	■■■□□ 2.88
NECAB3-221	ENST00000607055	RSPH4A	Q5TD94	716 aa		33.01	■■■□□ 2.87
NECAB3-221	ENST00000607055	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	32.99	■■■□□ 2.87
NECAB3-221	ENST00000607055	KDM5C	P41229	1560 aa		32.98	■■■□□ 2.87
NECAB3-221	ENST00000607055	ABCC5	O15440	1437 aa		32.96	■■■□□ 2.87
NECAB3-221	ENST00000607055	DAPK1	P53355	1430 aa		32.96	■■■□□ 2.87
NECAB3-221	ENST00000607055	DNMT1	P26358	1616 aa	Known RBP	32.96	■■■□□ 2.87
NECAB3-221	ENST00000607055	MYT1L	Q9UL68	1186 aa		32.95	■■■□□ 2.87
NECAB3-221	ENST00000607055	SPAG9	O60271	1321 aa	Known RBP	32.95	■■■□□ 2.86
NECAB3-221	ENST00000607055	ZMYM4	Q5VZL5	1548 aa		32.94	■■■□□ 2.86
NECAB3-221	ENST00000607055	TSPY4	P0CV99	314 aa		32.93	■■■□□ 2.86
NECAB3-221	ENST00000607055	TSPY10	P0CW01	314 aa		32.93	■■■□□ 2.86
NECAB3-221	ENST00000607055	ITGAE	P38570	1179 aa		32.93	■■■□□ 2.86
NECAB3-221	ENST00000607055	HECW2	Q9P2P5	1572 aa		32.9	■■■□□ 2.86
NECAB3-221	ENST00000607055	MLH3	Q9UHC1	1453 aa		32.89	■■■□□ 2.86
NECAB3-221	ENST00000607055	CROCC2	H7BZ55	1655 aa		32.88	■■■□□ 2.85
NECAB3-221	ENST00000607055	C9orf84	Q5VXU9	1444 aa		32.88	■■■□□ 2.85
NECAB3-221	ENST00000607055	MAGI2	Q86UL8	1455 aa		32.86	■■■□□ 2.85
NECAB3-221	ENST00000607055	INO80	Q9ULG1	1556 aa	Predicted RBP	32.86	■■■□□ 2.85
NECAB3-221	ENST00000607055	ATP7A	Q04656	1500 aa		32.86	■■■□□ 2.85
NECAB3-221	ENST00000607055	ZFYVE16	Q7Z3T8	1539 aa		32.86	■■■□□ 2.85
NECAB3-221	ENST00000607055	SHANK2	Q9UPX8	1470 aa		32.86	■■■□□ 2.85
NECAB3-221	ENST00000607055	YEATS2	Q9ULM3	1422 aa		32.85	■■■□□ 2.85
NECAB3-221	ENST00000607055	MAST1	Q9Y2H9	1570 aa		32.84	■■■□□ 2.85
NECAB3-221	ENST00000607055	CHIC2	Q9UKJ5	165 aa		32.84	■■■□□ 2.85
NECAB3-221	ENST00000607055	RTEL1-TNFRSF6B	F6WH68	1400 aa		32.84	■■■□□ 2.85
NECAB3-221	ENST00000607055	PTPRK	Q15262	1439 aa		32.84	■■■□□ 2.85
NECAB3-221	ENST00000607055	KIDINS220	Q9ULH0	1771 aa		32.83	■■■□□ 2.85
NECAB3-221	ENST00000607055	ARHGEF40	Q8TER5	1519 aa		32.79	■■■□□ 2.84
NECAB3-221	ENST00000607055	ABCA6	Q8N139	1617 aa		32.77	■■■□□ 2.84
NECAB3-221	ENST00000607055	DIP2C	Q9Y2E4	1556 aa		32.76	■■■□□ 2.84
NECAB3-221	ENST00000607055	ANKRD30A	Q9BXX3	1397 aa		32.73	■■■□□ 2.83
NECAB3-221	ENST00000607055	ADGB	Q8N7X0	1667 aa		32.72	■■■□□ 2.83
NECAB3-221	ENST00000607055	ATP10A	O60312	1499 aa		32.72	■■■□□ 2.83
NECAB3-221	ENST00000607055	ADGRL2	O95490	1459 aa		32.72	■■■□□ 2.83
NECAB3-221	ENST00000607055	RRP7BP	Q9NSQ0	103 aa		32.71	■■■□□ 2.83
NECAB3-221	ENST00000607055	PLXNC1	O60486	1568 aa		32.7	■■■□□ 2.83
NECAB3-221	ENST00000607055	NCOA1	Q15788	1441 aa		32.69	■■■□□ 2.82
NECAB3-221	ENST00000607055	KIF15	Q9NS87	1388 aa		32.68	■■■□□ 2.82
NECAB3-221	ENST00000607055	TRIM26	Q12899	539 aa	Predicted RBP	32.67	■■■□□ 2.82
NECAB3-221	ENST00000607055	ROCK1	Q13464	1354 aa		32.67	■■■□□ 2.82
NECAB3-221	ENST00000607055	A2M	P01023	1474 aa		32.66	■■■□□ 2.82
NECAB3-221	ENST00000607055	DHX29	Q7Z478	1369 aa	Known RBP	32.61	■■■□□ 2.81
NECAB3-221	ENST00000607055	RERE	Q9P2R6	1566 aa		32.6	■■■□□ 2.81
NECAB3-221	ENST00000607055	DUOX2	Q9NRD8	1548 aa		32.6	■■■□□ 2.81
NECAB3-221	ENST00000607055	ARID4B	Q4LE39	1312 aa	Predicted RBP	32.57	■■■□□ 2.8
NECAB3-221	ENST00000607055	SIGLEC1	Q9BZZ2	1709 aa		32.56	■■■□□ 2.8
NECAB3-221	ENST00000607055	HFM1	A2PYH4	1435 aa		32.51	■■■□□ 2.8
NECAB3-221	ENST00000607055	NAIP	Q13075	1403 aa		32.51	■■■□□ 2.8
NECAB3-221	ENST00000607055	ERBIN	Q96RT1	1412 aa		32.51	■■■□□ 2.8
NECAB3-221	ENST00000607055	AGL	P35573	1532 aa		32.51	■■■□□ 2.79
NECAB3-221	ENST00000607055	ANKRD50	Q9ULJ7	1429 aa		32.51	■■■□□ 2.79
NECAB3-221	ENST00000607055	KIF3B	O15066	747 aa		32.48	■■■□□ 2.79
NECAB3-221	ENST00000607055	GCC2	Q8IWJ2	1684 aa		32.47	■■■□□ 2.79
NECAB3-221	ENST00000607055	EIF2AK4	Q9P2K8	1649 aa	Known RBP	32.45	■■■□□ 2.79
NECAB3-221	ENST00000607055	MLEC	Q14165	292 aa		32.45	■■■□□ 2.79
NECAB3-221	ENST00000607055	GGT6	Q6P531	493 aa		32.4	■■■□□ 2.78
NECAB3-221	ENST00000607055	BCORL1	Q5H9F3	1711 aa		32.4	■■■□□ 2.78
NECAB3-221	ENST00000607055	SETD5	Q9C0A6	1442 aa		32.39	■■■□□ 2.78
NECAB3-221	ENST00000607055	PCGF6	Q9BYE7	350 aa		32.35	■■■□□ 2.77
NECAB3-221	ENST00000607055	RNF17	Q9BXT8	1623 aa	Known RBP	32.34	■■■□□ 2.77

Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms