RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 TEX14Q8IWB6 1497 aa31.03■■■□□ 2.56
SHKBP1-222ENST00000600320 FANCAO15360 1455 aa31.02■■■□□ 2.56
SHKBP1-222ENST00000600320 ITSN2Q9NZM3 1697 aa31.02■■■□□ 2.56
SHKBP1-222ENST00000600320 MYOM3Q5VTT5 1437 aa30.99■■■□□ 2.55
SHKBP1-222ENST00000600320 EFCAB2Q5VUJ9 269 aa30.98■■■□□ 2.55
SHKBP1-222ENST00000600320 CFDP1Q9UEE9 299 aaPredicted RBP30.98■■■□□ 2.55
SHKBP1-222ENST00000600320 NEO1Q92859 1461 aa30.97■■■□□ 2.55
SHKBP1-222ENST00000600320 AKNAQ7Z591 1439 aa30.95■■■□□ 2.54
SHKBP1-222ENST00000600320 CFAP74Q9C0B2 1584 aa30.94■■■□□ 2.54
SHKBP1-222ENST00000600320 SAMD9LQ8IVG5 1584 aa30.93■■■□□ 2.54
SHKBP1-222ENST00000600320 ZNF777Q9ULD5 760 aaPredicted RBP30.93■■■□□ 2.54
SHKBP1-222ENST00000600320 ZNF644Q9H582 1327 aaPredicted RBP30.91■■■□□ 2.54
SHKBP1-222ENST00000600320 MIA2Q96PC5 1412 aa30.9■■■□□ 2.54
SHKBP1-222ENST00000600320 FGD6Q6ZV73 1430 aa30.89■■■□□ 2.53
SHKBP1-222ENST00000600320 ADGRL1O94910 1474 aa30.88■■■□□ 2.53
SHKBP1-222ENST00000600320 COL17A1Q9UMD9 1497 aaPredicted RBP30.88■■■□□ 2.53
SHKBP1-222ENST00000600320 ABCC1P33527 1531 aa30.87■■■□□ 2.53
SHKBP1-222ENST00000600320 ARHGEF12Q9NZN5 1544 aa30.85■■■□□ 2.53
SHKBP1-222ENST00000600320 CAMSAP2Q08AD1 1489 aa30.85■■■□□ 2.53
SHKBP1-222ENST00000600320 SCAPERQ9BY12 1400 aa30.84■■■□□ 2.53
SHKBP1-222ENST00000600320 PTPN23Q9H3S7 1636 aa30.83■■■□□ 2.53
SHKBP1-222ENST00000600320 SYCP2Q9BX26 1530 aa30.81■■■□□ 2.52
SHKBP1-222ENST00000600320 TCOF1Q13428 1488 aaKnown RBP30.8■■■□□ 2.52
SHKBP1-222ENST00000600320 KDM6BO15054 1643 aa30.8■■■□□ 2.52
SHKBP1-222ENST00000600320 PLEKHH2Q8IVE3 1493 aa30.79■■■□□ 2.52
SHKBP1-222ENST00000600320 KIAA1107Q9UPP5 1409 aa30.79■■■□□ 2.52
SHKBP1-222ENST00000600320 DENND4BO75064 1496 aaPredicted RBP30.78■■■□□ 2.52
SHKBP1-222ENST00000600320 HNRNPMP52272 730 aaKnown RBP eCLIP30.78■■■□□ 2.52
SHKBP1-222ENST00000600320 TRAPPC8Q9Y2L5 1435 aa30.76■■■□□ 2.51
SHKBP1-222ENST00000600320 RAPGEF3O95398 923 aa30.76■■■□□ 2.51
SHKBP1-222ENST00000600320 MBD5Q9P267 1494 aa30.76■■■□□ 2.51
SHKBP1-222ENST00000600320 FRMPD1Q5SYB0 1578 aa30.75■■■□□ 2.51
SHKBP1-222ENST00000600320 POGZQ7Z3K3 1410 aa30.74■■■□□ 2.51
SHKBP1-222ENST00000600320 RRBP1Q9P2E9 1410 aaKnown RBP30.74■■■□□ 2.51
SHKBP1-222ENST00000600320 RICTORQ6R327 1708 aa30.73■■■□□ 2.51
SHKBP1-222ENST00000600320 FAM50AQ14320 339 aaKnown RBP30.71■■■□□ 2.51
SHKBP1-222ENST00000600320 AFAP1Q8N556 730 aa30.7■■■□□ 2.51
SHKBP1-222ENST00000600320 ARHGEF5Q12774 1597 aa30.67■■■□□ 2.5
SHKBP1-222ENST00000600320 ZNF518AQ6AHZ1 1483 aa30.66■■■□□ 2.5
SHKBP1-222ENST00000600320 KDM5CP41229 1560 aa30.65■■■□□ 2.5
SHKBP1-222ENST00000600320 CCDC141Q6ZP82 1450 aa30.64■■■□□ 2.5
SHKBP1-222ENST00000600320 ABCC5O15440 1437 aa30.63■■■□□ 2.49
SHKBP1-222ENST00000600320 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.62■■■□□ 2.49
SHKBP1-222ENST00000600320 ZMYM4Q5VZL5 1548 aa30.62■■■□□ 2.49
SHKBP1-222ENST00000600320 DNMT1P26358 1616 aaKnown RBP30.61■■■□□ 2.49
SHKBP1-222ENST00000600320 DAPK1P53355 1430 aa30.6■■■□□ 2.49
SHKBP1-222ENST00000600320 RSPH4AQ5TD94 716 aa30.6■■■□□ 2.49
SHKBP1-222ENST00000600320 AEBP2Q6ZN18 517 aaPredicted RBP30.58■■■□□ 2.49
SHKBP1-222ENST00000600320 SPAG9O60271 1321 aaKnown RBP30.55■■■□□ 2.48
SHKBP1-222ENST00000600320 HECW2Q9P2P5 1572 aa30.55■■■□□ 2.48
SHKBP1-222ENST00000600320 MLH3Q9UHC1 1453 aa30.55■■■□□ 2.48
SHKBP1-222ENST00000600320 CROCC2H7BZ55 1655 aa30.55■■■□□ 2.48
SHKBP1-222ENST00000600320 PTPRKQ15262 1439 aa30.53■■■□□ 2.48
SHKBP1-222ENST00000600320 YEATS2Q9ULM3 1422 aa30.53■■■□□ 2.48
SHKBP1-222ENST00000600320 INO80Q9ULG1 1556 aaPredicted RBP30.53■■■□□ 2.48
SHKBP1-222ENST00000600320 KIDINS220Q9ULH0 1771 aa30.52■■■□□ 2.48
SHKBP1-222ENST00000600320 ZFYVE16Q7Z3T8 1539 aa30.52■■■□□ 2.48
SHKBP1-222ENST00000600320 C9orf84Q5VXU9 1444 aa30.51■■■□□ 2.47
SHKBP1-222ENST00000600320 MAST1Q9Y2H9 1570 aa30.5■■■□□ 2.47
SHKBP1-222ENST00000600320 TSPY4P0CV99 314 aa30.5■■■□□ 2.47
SHKBP1-222ENST00000600320 TSPY10P0CW01 314 aa30.5■■■□□ 2.47
SHKBP1-222ENST00000600320 ITGAEP38570 1179 aa30.5■■■□□ 2.47
SHKBP1-222ENST00000600320 ATP7AQ04656 1500 aa30.5■■■□□ 2.47
SHKBP1-222ENST00000600320 MAGI2Q86UL8 1455 aa30.5■■■□□ 2.47
SHKBP1-222ENST00000600320 SHANK2Q9UPX8 1470 aa30.5■■■□□ 2.47
SHKBP1-222ENST00000600320 MYT1LQ9UL68 1186 aa30.49■■■□□ 2.47
SHKBP1-222ENST00000600320 RTEL1-TNFRSF6BF6WH68 1400 aa30.47■■■□□ 2.47
SHKBP1-222ENST00000600320 CHIC2Q9UKJ5 165 aa30.46■■■□□ 2.47
SHKBP1-222ENST00000600320 ABCA6Q8N139 1617 aa30.46■■■□□ 2.47
SHKBP1-222ENST00000600320 ARHGEF40Q8TER5 1519 aa30.46■■■□□ 2.47
SHKBP1-222ENST00000600320 DIP2CQ9Y2E4 1556 aa30.44■■■□□ 2.46
SHKBP1-222ENST00000600320 ADGRL2O95490 1459 aa30.39■■■□□ 2.46
SHKBP1-222ENST00000600320 PLXNC1O60486 1568 aa30.37■■■□□ 2.45
SHKBP1-222ENST00000600320 ADGBQ8N7X0 1667 aa30.37■■■□□ 2.45
SHKBP1-222ENST00000600320 ATP10AO60312 1499 aa30.37■■■□□ 2.45
SHKBP1-222ENST00000600320 NCOA1Q15788 1441 aa30.35■■■□□ 2.45
SHKBP1-222ENST00000600320 ANKRD30AQ9BXX3 1397 aa30.34■■■□□ 2.45
SHKBP1-222ENST00000600320 RRP7BPQ9NSQ0 103 aa30.33■■■□□ 2.45
SHKBP1-222ENST00000600320 ROCK1Q13464 1354 aa30.32■■■□□ 2.44
SHKBP1-222ENST00000600320 A2MP01023 1474 aa30.31■■■□□ 2.44
SHKBP1-222ENST00000600320 KIF15Q9NS87 1388 aa30.31■■■□□ 2.44
SHKBP1-222ENST00000600320 SIGLEC1Q9BZZ2 1709 aa30.31■■■□□ 2.44
SHKBP1-222ENST00000600320 REREQ9P2R6 1566 aa30.29■■■□□ 2.44
SHKBP1-222ENST00000600320 DHX29Q7Z478 1369 aaKnown RBP30.27■■■□□ 2.44
SHKBP1-222ENST00000600320 TRIM26Q12899 539 aaPredicted RBP30.26■■■□□ 2.43
SHKBP1-222ENST00000600320 DUOX2Q9NRD8 1548 aa30.25■■■□□ 2.43
SHKBP1-222ENST00000600320 AGLP35573 1532 aa30.21■■■□□ 2.43
SHKBP1-222ENST00000600320 NAIPQ13075 1403 aa30.19■■■□□ 2.42
SHKBP1-222ENST00000600320 HFM1A2PYH4 1435 aa30.17■■■□□ 2.42
SHKBP1-222ENST00000600320 ERBINQ96RT1 1412 aa30.16■■■□□ 2.42
SHKBP1-222ENST00000600320 ANKRD50Q9ULJ7 1429 aa30.16■■■□□ 2.42
SHKBP1-222ENST00000600320 GCC2Q8IWJ2 1684 aa30.16■■■□□ 2.42
SHKBP1-222ENST00000600320 ARID4BQ4LE39 1312 aaPredicted RBP30.16■■■□□ 2.42
SHKBP1-222ENST00000600320 KIF3BO15066 747 aa30.13■■■□□ 2.41
SHKBP1-222ENST00000600320 EIF2AK4Q9P2K8 1649 aaKnown RBP30.12■■■□□ 2.41
SHKBP1-222ENST00000600320 BCORL1Q5H9F3 1711 aa30.11■■■□□ 2.41
SHKBP1-222ENST00000600320 MLECQ14165 292 aa30.1■■■□□ 2.41
SHKBP1-222ENST00000600320 RNF17Q9BXT8 1623 aaKnown RBP30.05■■■□□ 2.4
SHKBP1-222ENST00000600320 MROH1Q8NDA8 1641 aa30.04■■■□□ 2.4
SHKBP1-222ENST00000600320 GGT6Q6P531 493 aa30.04■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms