RNA–Protein interactions for RNA: ENST00000598717.5

LTBP4-223, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 5

Gene LTBP4, Length 811 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-223	ENST00000598717	MAP3K4	Q9Y6R4	1608 aa		29.49	■■■□□ 2.31
LTBP4-223	ENST00000598717	EFCAB2	Q5VUJ9	269 aa		29.49	■■■□□ 2.31
LTBP4-223	ENST00000598717	KIF13A	Q9H1H9	1805 aa		29.49	■■■□□ 2.31
LTBP4-223	ENST00000598717	ARAP3	Q8WWN8	1544 aa		29.47	■■■□□ 2.31
LTBP4-223	ENST00000598717	CDC42BPB	Q9Y5S2	1711 aa		29.45	■■■□□ 2.31
LTBP4-223	ENST00000598717	RRBP1	Q9P2E9	1410 aa	Known RBP	29.44	■■■□□ 2.3
LTBP4-223	ENST00000598717	FAM50A	Q14320	339 aa	Known RBP	29.43	■■■□□ 2.3
LTBP4-223	ENST00000598717	FANCA	O15360	1455 aa		29.42	■■■□□ 2.3
LTBP4-223	ENST00000598717	PTPN23	Q9H3S7	1636 aa		29.4	■■■□□ 2.3
LTBP4-223	ENST00000598717	ZNF644	Q9H582	1327 aa	Predicted RBP	29.4	■■■□□ 2.3
LTBP4-223	ENST00000598717	TEX14	Q8IWB6	1497 aa		29.38	■■■□□ 2.29
LTBP4-223	ENST00000598717	TCOF1	Q13428	1488 aa	Known RBP	29.37	■■■□□ 2.29
LTBP4-223	ENST00000598717	CAMSAP2	Q08AD1	1489 aa		29.36	■■■□□ 2.29
LTBP4-223	ENST00000598717	TSPOAP1	O95153	1857 aa		29.36	■■■□□ 2.29
LTBP4-223	ENST00000598717	TRIM26	Q12899	539 aa	Predicted RBP	29.36	■■■□□ 2.29
LTBP4-223	ENST00000598717	CFAP74	Q9C0B2	1584 aa		29.35	■■■□□ 2.29
LTBP4-223	ENST00000598717	PLEKHH2	Q8IVE3	1493 aa		29.35	■■■□□ 2.29
LTBP4-223	ENST00000598717	NEO1	Q92859	1461 aa		29.35	■■■□□ 2.29
LTBP4-223	ENST00000598717	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	29.34	■■■□□ 2.29	2e-6	■■■■□ 20.4
LTBP4-223	ENST00000598717	AKNA	Q7Z591	1439 aa		29.34	■■■□□ 2.29
LTBP4-223	ENST00000598717	SAMD9L	Q8IVG5	1584 aa		29.34	■■■□□ 2.29
LTBP4-223	ENST00000598717	PPRC1	Q5VV67	1664 aa	Known RBP	29.3	■■■□□ 2.28
LTBP4-223	ENST00000598717	HNRNPM	P52272	730 aa	Known RBP eCLIP	29.29	■■■□□ 2.28
LTBP4-223	ENST00000598717	ADGRL1	O94910	1474 aa		29.29	■■■□□ 2.28
LTBP4-223	ENST00000598717	KIAA1107	Q9UPP5	1409 aa		29.28	■■■□□ 2.28
LTBP4-223	ENST00000598717	SCAPER	Q9BY12	1400 aa		29.26	■■■□□ 2.27
LTBP4-223	ENST00000598717	ABCC1	P33527	1531 aa		29.25	■■■□□ 2.27
LTBP4-223	ENST00000598717	ITGAE	P38570	1179 aa		29.25	■■■□□ 2.27
LTBP4-223	ENST00000598717	RSPH4A	Q5TD94	716 aa		29.25	■■■□□ 2.27
LTBP4-223	ENST00000598717	SYCP2	Q9BX26	1530 aa		29.25	■■■□□ 2.27
LTBP4-223	ENST00000598717	MBD5	Q9P267	1494 aa		29.21	■■■□□ 2.27
LTBP4-223	ENST00000598717	ARHGEF12	Q9NZN5	1544 aa		29.2	■■■□□ 2.27
LTBP4-223	ENST00000598717	ARHGEF5	Q12774	1597 aa		29.18	■■■□□ 2.26
LTBP4-223	ENST00000598717	TSPY4	P0CV99	314 aa		29.18	■■■□□ 2.26
LTBP4-223	ENST00000598717	TSPY10	P0CW01	314 aa		29.18	■■■□□ 2.26
LTBP4-223	ENST00000598717	DAPK1	P53355	1430 aa		29.18	■■■□□ 2.26
LTBP4-223	ENST00000598717	CCDC141	Q6ZP82	1450 aa		29.17	■■■□□ 2.26
LTBP4-223	ENST00000598717	ABCC5	O15440	1437 aa		29.17	■■■□□ 2.26
LTBP4-223	ENST00000598717	DENND4B	O75064	1496 aa	Predicted RBP	29.17	■■■□□ 2.26
LTBP4-223	ENST00000598717	DNMT1	P26358	1616 aa	Known RBP	29.16	■■■□□ 2.26
LTBP4-223	ENST00000598717	TRAPPC8	Q9Y2L5	1435 aa		29.16	■■■□□ 2.26
LTBP4-223	ENST00000598717	AFAP1	Q8N556	730 aa		29.14	■■■□□ 2.26
LTBP4-223	ENST00000598717	ZNF518A	Q6AHZ1	1483 aa		29.12	■■■□□ 2.25
LTBP4-223	ENST00000598717	POGZ	Q7Z3K3	1410 aa		29.11	■■■□□ 2.25
LTBP4-223	ENST00000598717	RAPGEF3	O95398	923 aa		29.11	■■■□□ 2.25
LTBP4-223	ENST00000598717	PCGF6	Q9BYE7	350 aa		29.1	■■■□□ 2.25
LTBP4-223	ENST00000598717	CHIC2	Q9UKJ5	165 aa		29.1	■■■□□ 2.25
LTBP4-223	ENST00000598717	MYT1L	Q9UL68	1186 aa		29.08	■■■□□ 2.25
LTBP4-223	ENST00000598717	SPAG9	O60271	1321 aa	Known RBP	29.08	■■■□□ 2.25
LTBP4-223	ENST00000598717	PTPRK	Q15262	1439 aa		29.08	■■■□□ 2.25
LTBP4-223	ENST00000598717	SHANK2	Q9UPX8	1470 aa		29.07	■■■□□ 2.24
LTBP4-223	ENST00000598717	C9orf84	Q5VXU9	1444 aa		29.06	■■■□□ 2.24
LTBP4-223	ENST00000598717	CROCC2	H7BZ55	1655 aa		29.05	■■■□□ 2.24
LTBP4-223	ENST00000598717	COL17A1	Q9UMD9	1497 aa	Predicted RBP	29.04	■■■□□ 2.24
LTBP4-223	ENST00000598717	RICTOR	Q6R327	1708 aa		29.01	■■■□□ 2.23
LTBP4-223	ENST00000598717	KDM5C	P41229	1560 aa		29.01	■■■□□ 2.23
LTBP4-223	ENST00000598717	MAST1	Q9Y2H9	1570 aa		29.01	■■■□□ 2.23
LTBP4-223	ENST00000598717	ANKRD30A	Q9BXX3	1397 aa		29.01	■■■□□ 2.23
LTBP4-223	ENST00000598717	RTEL1-TNFRSF6B	F6WH68	1400 aa		29	■■■□□ 2.23
LTBP4-223	ENST00000598717	KDM6B	O15054	1643 aa		28.99	■■■□□ 2.23
LTBP4-223	ENST00000598717	ROCK1	Q13464	1354 aa		28.98	■■■□□ 2.23
LTBP4-223	ENST00000598717	FRMPD1	Q5SYB0	1578 aa		28.97	■■■□□ 2.23
LTBP4-223	ENST00000598717	RRP7BP	Q9NSQ0	103 aa		28.97	■■■□□ 2.23
LTBP4-223	ENST00000598717	MLH3	Q9UHC1	1453 aa		28.97	■■■□□ 2.23
LTBP4-223	ENST00000598717	ADGRL2	O95490	1459 aa		28.96	■■■□□ 2.23
LTBP4-223	ENST00000598717	ATP7A	Q04656	1500 aa		28.95	■■■□□ 2.23
LTBP4-223	ENST00000598717	ADGB	Q8N7X0	1667 aa		28.95	■■■□□ 2.22
LTBP4-223	ENST00000598717	NCOA1	Q15788	1441 aa		28.94	■■■□□ 2.22
LTBP4-223	ENST00000598717	HECW2	Q9P2P5	1572 aa		28.94	■■■□□ 2.22
LTBP4-223	ENST00000598717	ZFYVE16	Q7Z3T8	1539 aa		28.94	■■■□□ 2.22
LTBP4-223	ENST00000598717	INO80	Q9ULG1	1556 aa	Predicted RBP	28.93	■■■□□ 2.22
LTBP4-223	ENST00000598717	ZMYM4	Q5VZL5	1548 aa		28.93	■■■□□ 2.22
LTBP4-223	ENST00000598717	MAGI2	Q86UL8	1455 aa		28.91	■■■□□ 2.22
LTBP4-223	ENST00000598717	KIF15	Q9NS87	1388 aa		28.89	■■■□□ 2.22
LTBP4-223	ENST00000598717	KIDINS220	Q9ULH0	1771 aa		28.88	■■■□□ 2.21
LTBP4-223	ENST00000598717	PLXNC1	O60486	1568 aa		28.88	■■■□□ 2.21
LTBP4-223	ENST00000598717	HFM1	A2PYH4	1435 aa		28.87	■■■□□ 2.21
LTBP4-223	ENST00000598717	NAIP	Q13075	1403 aa		28.85	■■■□□ 2.21
LTBP4-223	ENST00000598717	SETD5	Q9C0A6	1442 aa		28.84	■■■□□ 2.21
LTBP4-223	ENST00000598717	YEATS2	Q9ULM3	1422 aa		28.84	■■■□□ 2.21
LTBP4-223	ENST00000598717	DUOX2	Q9NRD8	1548 aa		28.81	■■■□□ 2.2
LTBP4-223	ENST00000598717	ABCA6	Q8N139	1617 aa		28.8	■■■□□ 2.2
LTBP4-223	ENST00000598717	DIP2C	Q9Y2E4	1556 aa		28.79	■■■□□ 2.2
LTBP4-223	ENST00000598717	ANKRD50	Q9ULJ7	1429 aa		28.78	■■■□□ 2.2
LTBP4-223	ENST00000598717	DHX29	Q7Z478	1369 aa	Known RBP	28.78	■■■□□ 2.2
LTBP4-223	ENST00000598717	GCC2	Q8IWJ2	1684 aa		28.78	■■■□□ 2.2
LTBP4-223	ENST00000598717	ATP10A	O60312	1499 aa		28.78	■■■□□ 2.2
LTBP4-223	ENST00000598717	A2M	P01023	1474 aa		28.78	■■■□□ 2.2
LTBP4-223	ENST00000598717	ARHGEF40	Q8TER5	1519 aa		28.75	■■■□□ 2.19
LTBP4-223	ENST00000598717	ERBIN	Q96RT1	1412 aa		28.74	■■■□□ 2.19
LTBP4-223	ENST00000598717	RAB3GAP2	Q9H2M9	1393 aa		28.74	■■■□□ 2.19
LTBP4-223	ENST00000598717	HRC	P23327	699 aa		28.7	■■■□□ 2.18
LTBP4-223	ENST00000598717	ACIN1	Q9UKV3	1341 aa	Known RBP	28.68	■■■□□ 2.18
LTBP4-223	ENST00000598717	KIF3B	O15066	747 aa		28.67	■■■□□ 2.18
LTBP4-223	ENST00000598717	RERE	Q9P2R6	1566 aa		28.66	■■■□□ 2.18
LTBP4-223	ENST00000598717	EIF2AK4	Q9P2K8	1649 aa	Known RBP	28.63	■■■□□ 2.17
LTBP4-223	ENST00000598717	TRIM52	Q96A61	297 aa		28.63	■■■□□ 2.17
LTBP4-223	ENST00000598717	ARID4B	Q4LE39	1312 aa	Predicted RBP	28.61	■■■□□ 2.17
LTBP4-223	ENST00000598717	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	28.59	■■■□□ 2.17
LTBP4-223	ENST00000598717	AGL	P35573	1532 aa		28.59	■■■□□ 2.17

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms