RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 FHOD3Q2V2M9 1422 aa15.3■□□□□ 0.04
TRIM28-208ENST00000597172 UBTFP17480 764 aaKnown RBP15.29■□□□□ 0.04
TRIM28-208ENST00000597172 SIGLEC1Q9BZZ2 1709 aa15.29■□□□□ 0.04
TRIM28-208ENST00000597172 ATP10BO94823 1461 aa15.27■□□□□ 0.04
TRIM28-208ENST00000597172 RICTORQ6R327 1708 aa15.26■□□□□ 0.03
TRIM28-208ENST00000597172 ZFYVE16Q7Z3T8 1539 aa15.26■□□□□ 0.03
TRIM28-208ENST00000597172 ARHGEF12Q9NZN5 1544 aa15.25■□□□□ 0.03
TRIM28-208ENST00000597172 SCAF1Q9H7N4 1312 aaKnown RBP15.24■□□□□ 0.03
TRIM28-208ENST00000597172 EFCAB5A4FU69 1503 aa15.24■□□□□ 0.03
TRIM28-208ENST00000597172 ZNF335Q9H4Z2 1342 aaPredicted RBP15.23■□□□□ 0.03
TRIM28-208ENST00000597172 MAGI2Q86UL8 1455 aa15.22■□□□□ 0.03
TRIM28-208ENST00000597172 PIP4K2BP78356 416 aa15.21■□□□□ 0.03
TRIM28-208ENST00000597172 ZMYM4Q5VZL5 1548 aa15.21■□□□□ 0.03
TRIM28-208ENST00000597172 NCOA1Q15788 1441 aa15.2■□□□□ 0.02
TRIM28-208ENST00000597172 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-208ENST00000597172 HNRNPUL2Q1KMD3 747 aaKnown RBP15.18■□□□□ 0.02
TRIM28-208ENST00000597172 ATP10AO60312 1499 aa15.16■□□□□ 0.02
TRIM28-208ENST00000597172 TOM1O60784 492 aa15.15■□□□□ 0.02
TRIM28-208ENST00000597172 NCKAP5LQ9HCH0 1330 aa15.15■□□□□ 0.02
TRIM28-208ENST00000597172 HECW1Q76N89 1606 aa15.14■□□□□ 0.01
TRIM28-208ENST00000597172 RANGAP1P46060 587 aaPredicted RBP15.13■□□□□ 0.01
TRIM28-208ENST00000597172 C9orf84Q5VXU9 1444 aa15.13■□□□□ 0.01
TRIM28-208ENST00000597172 TRAPPC8Q9Y2L5 1435 aa15.13■□□□□ 0.01
TRIM28-208ENST00000597172 CFAP74Q9C0B2 1584 aa15.11■□□□□ 0.01
TRIM28-208ENST00000597172 P3H3Q8IVL6 736 aa15.1■□□□□ 0.01
TRIM28-208ENST00000597172 CTTNBP2Q8WZ74 1663 aa15.09■□□□□ 0.01
TRIM28-208ENST00000597172 CEP162Q5TB80 1403 aa15.09■□□□□ 0.01
TRIM28-208ENST00000597172 RGS17Q9UGC6 210 aaPredicted RBP15.09■□□□□ 0.01
TRIM28-208ENST00000597172 CAMSAP1Q5T5Y3 1602 aa15.08■□□□□ 0
TRIM28-208ENST00000597172 ESF1Q9H501 851 aaKnown RBP15.08■□□□□ 0
TRIM28-208ENST00000597172 SCAPERQ9BY12 1400 aa15.08■□□□□ 0
TRIM28-208ENST00000597172 PLEKHD1A6NEE1 506 aa15.07■□□□□ 0
TRIM28-208ENST00000597172 CLIP1P30622 1438 aa15.07■□□□□ 0
TRIM28-208ENST00000597172 C3P01024 1663 aa15.06■□□□□ 0
TRIM28-208ENST00000597172 PKD2Q13563 968 aa15.06■□□□□ 0
TRIM28-208ENST00000597172 ARHGAP35Q9NRY4 1499 aa15.04■□□□□ -0
TRIM28-208ENST00000597172 PPP6R1Q9UPN7 881 aa15.02■□□□□ -0
TRIM28-208ENST00000597172 SENP3Q9H4L4 574 aaPredicted RBP15□□□□□ -0.01
TRIM28-208ENST00000597172 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15□□□□□ -0.01
TRIM28-208ENST00000597172 MYT1LQ9UL68 1186 aa14.99□□□□□ -0.01
TRIM28-208ENST00000597172 SAMD9Q5K651 1589 aa14.98□□□□□ -0.01
TRIM28-208ENST00000597172 RAPGEF6Q8TEU7 1601 aa14.98□□□□□ -0.01
TRIM28-208ENST00000597172 POTEAQ6S8J7 498 aa14.97□□□□□ -0.01
TRIM28-208ENST00000597172 PTPRKQ15262 1439 aa14.96□□□□□ -0.01
TRIM28-208ENST00000597172 NUP153P49790 1475 aaKnown RBP14.95□□□□□ -0.02
TRIM28-208ENST00000597172 PLA2R1Q13018 1463 aa14.95□□□□□ -0.02
TRIM28-208ENST00000597172 NPATQ14207 1427 aa14.95□□□□□ -0.02
TRIM28-208ENST00000597172 TCOF1Q13428 1488 aaKnown RBP14.95□□□□□ -0.02
TRIM28-208ENST00000597172 CNTLNQ9NXG0 1405 aa14.94□□□□□ -0.02
TRIM28-208ENST00000597172 EFCAB2Q5VUJ9 269 aa14.94□□□□□ -0.02
TRIM28-208ENST00000597172 PLCH2O75038 1416 aa14.93□□□□□ -0.02
TRIM28-208ENST00000597172 SRCAPQ6ZRS2 3230 aa14.93□□□□□ -0.02
TRIM28-208ENST00000597172 CPS1P31327 1500 aa14.93□□□□□ -0.02
TRIM28-208ENST00000597172 AFAP1Q8N556 730 aa14.93□□□□□ -0.02
TRIM28-208ENST00000597172 AGLP35573 1532 aa14.92□□□□□ -0.02
TRIM28-208ENST00000597172 SHANK2Q9UPX8 1470 aa14.9□□□□□ -0.02
TRIM28-208ENST00000597172 ZNF518AQ6AHZ1 1483 aa14.89□□□□□ -0.03
TRIM28-208ENST00000597172 ZMYM3Q14202 1370 aa14.89□□□□□ -0.03
TRIM28-208ENST00000597172 REREQ9P2R6 1566 aa14.89□□□□□ -0.03
TRIM28-208ENST00000597172 VPS8Q8N3P4 1428 aa14.88□□□□□ -0.03
TRIM28-208ENST00000597172 DIP2CQ9Y2E4 1556 aa14.88□□□□□ -0.03
TRIM28-208ENST00000597172 ALKQ9UM73 1620 aa14.88□□□□□ -0.03
TRIM28-208ENST00000597172 FMN1Q68DA7 1419 aa14.86□□□□□ -0.03
TRIM28-208ENST00000597172 SUPT6HQ7KZ85 1726 aaKnown RBP14.86□□□□□ -0.03
TRIM28-208ENST00000597172 UPF1Q92900 1129 aaKnown RBP eCLIP14.84□□□□□ -0.03
TRIM28-208ENST00000597172 KDM5CP41229 1560 aa14.84□□□□□ -0.03
TRIM28-208ENST00000597172 CEP170BQ9Y4F5 1589 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-208ENST00000597172 ZNF142P52746 1687 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-208ENST00000597172 CASKIN1Q8WXD9 1431 aa14.82□□□□□ -0.04
TRIM28-208ENST00000597172 SETD1AO15047 1707 aaKnown RBP14.81□□□□□ -0.04
TRIM28-208ENST00000597172 MLH3Q9UHC1 1453 aa14.81□□□□□ -0.04
TRIM28-208ENST00000597172 ABCA6Q8N139 1617 aa14.81□□□□□ -0.04
TRIM28-208ENST00000597172 MROH2AA6NES4 1674 aa14.81□□□□□ -0.04
TRIM28-208ENST00000597172 MYO3AQ8NEV4 1616 aa14.8□□□□□ -0.04
TRIM28-208ENST00000597172 ATP1B4Q9UN42 357 aaPredicted RBP14.79□□□□□ -0.04
TRIM28-208ENST00000597172 FYCO1Q9BQS8 1478 aa14.76□□□□□ -0.05
TRIM28-208ENST00000597172 MYO5CQ9NQX4 1742 aa14.75□□□□□ -0.05
TRIM28-208ENST00000597172 VWDEQ8N2E2 1590 aa14.75□□□□□ -0.05
TRIM28-208ENST00000597172 ANKLE2Q86XL3 938 aa14.74□□□□□ -0.05
TRIM28-208ENST00000597172 A2ML1A8K2U0 1454 aa14.74□□□□□ -0.05
TRIM28-208ENST00000597172 NEURL4Q96JN8 1562 aa14.73□□□□□ -0.05
TRIM28-208ENST00000597172 ARHGAP5Q13017 1502 aa14.72□□□□□ -0.05
TRIM28-208ENST00000597172 DNMT1P26358 1616 aaKnown RBP14.72□□□□□ -0.05
TRIM28-208ENST00000597172 APLP2Q06481 763 aa14.71□□□□□ -0.05
TRIM28-208ENST00000597172 KANK4Q5T7N3 995 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-208ENST00000597172 POLR1AO95602 1720 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-208ENST00000597172 CDK13Q14004 1512 aaKnown RBP14.71□□□□□ -0.06
TRIM28-208ENST00000597172 LRRC7Q96NW7 1537 aa14.71□□□□□ -0.06
TRIM28-208ENST00000597172 PPARGC1BQ86YN6 1023 aaKnown RBP14.7□□□□□ -0.06
TRIM28-208ENST00000597172 LRRIQ1Q96JM4 1722 aa14.69□□□□□ -0.06
TRIM28-208ENST00000597172 CLTCQ00610 1675 aaKnown RBP14.69□□□□□ -0.06
TRIM28-208ENST00000597172 MAP3K1Q13233 1512 aa14.69□□□□□ -0.06
TRIM28-208ENST00000597172 RNF17Q9BXT8 1623 aaKnown RBP14.69□□□□□ -0.06
TRIM28-208ENST00000597172 TRIM52Q96A61 297 aa14.67□□□□□ -0.06
TRIM28-208ENST00000597172 CDK11AQ9UQ88 783 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-208ENST00000597172 KIDINS220Q9ULH0 1771 aa14.67□□□□□ -0.06
TRIM28-208ENST00000597172 NPHP4O75161 1426 aaPredicted RBP14.66□□□□□ -0.06
TRIM28-208ENST00000597172 TIAM1Q13009 1591 aa14.66□□□□□ -0.06
TRIM28-208ENST00000597172 CCDC18Q5T9S5 1454 aa14.66□□□□□ -0.06
TRIM28-208ENST00000597172 GGT6Q6P531 493 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms