RNA–Protein interactions for RNA: ENST00000576409.5

ATPAF1-214, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATPAF1, Length 4,158 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-214ENST00000576409 PDE4AP27815 886 aa23.17■■□□□ 1.3
ATPAF1-214ENST00000576409 NUP155O75694 1391 aa23.16■■□□□ 1.3
ATPAF1-214ENST00000576409 ZBED9Q6R2W3 1325 aa23.16■■□□□ 1.3
ATPAF1-214ENST00000576409 PAK3O75914 559 aaPredicted RBP23.15■■□□□ 1.3
ATPAF1-214ENST00000576409 CCDC146Q8IYE0 955 aa23.15■■□□□ 1.3
ATPAF1-214ENST00000576409 ATAD2BQ9ULI0 1458 aa23.15■■□□□ 1.3
ATPAF1-214ENST00000576409 ARAP1Q96P48 1450 aa23.14■■□□□ 1.29
ATPAF1-214ENST00000576409 KTN1Q86UP2 1357 aaKnown RBP23.12■■□□□ 1.29
ATPAF1-214ENST00000576409 U2SURPO15042 1029 aaKnown RBP23.12■■□□□ 1.29
ATPAF1-214ENST00000576409 PLEKHG5O94827 1062 aa23.11■■□□□ 1.29
ATPAF1-214ENST00000576409 MSH5O43196 834 aa23.1■■□□□ 1.29
ATPAF1-214ENST00000576409 CLUAP1Q96AJ1 413 aa23.1■■□□□ 1.29
ATPAF1-214ENST00000576409 CDCA8Q53HL2 280 aa23.1■■□□□ 1.29
ATPAF1-214ENST00000576409 SAFB2Q14151 953 aaKnown RBP eCLIP23.1■■□□□ 1.29
ATPAF1-214ENST00000576409 CCDC18Q5T9S5 1454 aa23.09■■□□□ 1.29
ATPAF1-214ENST00000576409 ROCK2O75116 1388 aaKnown RBP23.08■■□□□ 1.29
ATPAF1-214ENST00000576409 IGF1RP08069 1367 aa23.08■■□□□ 1.29
ATPAF1-214ENST00000576409 NLRP13Q86W25 1043 aa23.08■■□□□ 1.28
ATPAF1-214ENST00000576409 RALBP1Q15311 655 aa23.07■■□□□ 1.28
ATPAF1-214ENST00000576409 ZNF644Q9H582 1327 aaPredicted RBP23.06■■□□□ 1.28
ATPAF1-214ENST00000576409 KIF7Q2M1P5 1343 aa23.06■■□□□ 1.28
ATPAF1-214ENST00000576409 CFAP53Q96M91 514 aa23.06■■□□□ 1.28
ATPAF1-214ENST00000576409 HNRNPMP52272 730 aaKnown RBP eCLIP23.05■■□□□ 1.28
ATPAF1-214ENST00000576409 CRBNQ96SW2 442 aa23.04■■□□□ 1.28
ATPAF1-214ENST00000576409 MYH16Q9H6N6 1097 aa23.04■■□□□ 1.28
ATPAF1-214ENST00000576409 RRP1P56182 461 aaKnown RBP23.04■■□□□ 1.28
ATPAF1-214ENST00000576409 PANK3Q9H999 370 aa22.99■■□□□ 1.27
ATPAF1-214ENST00000576409 BCL2L13Q9BXK5 485 aa22.98■■□□□ 1.27
ATPAF1-214ENST00000576409 CCDC7Q96M83 1385 aa22.98■■□□□ 1.27
ATPAF1-214ENST00000576409 CDCA7LQ96GN5 454 aa22.97■■□□□ 1.27
ATPAF1-214ENST00000576409 NPM1P06748 294 aaKnown RBP eCLIP22.97■■□□□ 1.27
ATPAF1-214ENST00000576409 GOLGA2Q08379 1002 aa22.97■■□□□ 1.27
ATPAF1-214ENST00000576409 USP47Q96K76 1375 aa22.96■■□□□ 1.27
ATPAF1-214ENST00000576409 RRP7AQ9Y3A4 280 aaKnown RBP22.96■■□□□ 1.27
ATPAF1-214ENST00000576409 MORC1Q86VD1 984 aa22.95■■□□□ 1.26
ATPAF1-214ENST00000576409 WDR97A6NE52 1622 aa22.95■■□□□ 1.26
ATPAF1-214ENST00000576409 GOLGA6L22H0YM25 854 aa22.95■■□□□ 1.26
ATPAF1-214ENST00000576409 HSP90AB1P08238 724 aaKnown RBP22.95■■□□□ 1.26
ATPAF1-214ENST00000576409 MAPK8IP3Q9UPT6 1336 aa22.95■■□□□ 1.26
ATPAF1-214ENST00000576409 SYNJ1O43426 1573 aa22.95■■□□□ 1.26
ATPAF1-214ENST00000576409 RRBP1Q9P2E9 1410 aaKnown RBP22.94■■□□□ 1.26
ATPAF1-214ENST00000576409 CADPSQ9ULU8 1353 aa22.93■■□□□ 1.26
ATPAF1-214ENST00000576409 NBPF8Q3BBV2 869 aa22.93■■□□□ 1.26
ATPAF1-214ENST00000576409 AKNAQ7Z591 1439 aa22.93■■□□□ 1.26
ATPAF1-214ENST00000576409 MYBBP1AQ9BQG0 1328 aaKnown RBP22.93■■□□□ 1.26
ATPAF1-214ENST00000576409 ZBTB7CA1YPR0 619 aa22.93■■□□□ 1.26
ATPAF1-214ENST00000576409 IL27Q8NEV9 243 aa22.92■■□□□ 1.26
ATPAF1-214ENST00000576409 APBB1O00213 710 aa22.91■■□□□ 1.26
ATPAF1-214ENST00000576409 LRRC9Q6ZRR7 1453 aa22.91■■□□□ 1.26
ATPAF1-214ENST00000576409 ESF1Q9H501 851 aaKnown RBP22.9■■□□□ 1.26
ATPAF1-214ENST00000576409 FGD6Q6ZV73 1430 aa22.9■■□□□ 1.26
ATPAF1-214ENST00000576409 MFAP1P55081 439 aaKnown RBP22.89■■□□□ 1.26
ATPAF1-214ENST00000576409 U2AF1L5P0DN76 240 aaPredicted RBP22.89■■□□□ 1.25
ATPAF1-214ENST00000576409 U2AF1Q01081 240 aaKnown RBP eCLIP22.89■■□□□ 1.25
ATPAF1-214ENST00000576409 FOXD4L1Q9NU39 408 aa22.88■■□□□ 1.25
ATPAF1-214ENST00000576409 PDE3BQ13370 1112 aa22.87■■□□□ 1.25
ATPAF1-214ENST00000576409 GSE1Q14687 1217 aa22.87■■□□□ 1.25
ATPAF1-214ENST00000576409 SKAP1Q86WV1 359 aa22.87■■□□□ 1.25
ATPAF1-214ENST00000576409 C11orf95C9JLR9 678 aaPredicted RBP22.87■■□□□ 1.25
ATPAF1-214ENST00000576409 HSCBQ8IWL3 235 aa22.86■■□□□ 1.25
ATPAF1-214ENST00000576409 PTMAP06454 111 aaKnown RBP22.86■■□□□ 1.25
ATPAF1-214ENST00000576409 PLCB2Q00722 1185 aa22.86■■□□□ 1.25
ATPAF1-214ENST00000576409 ANKRD30AQ9BXX3 1397 aa22.86■■□□□ 1.25
ATPAF1-214ENST00000576409 KIF15Q9NS87 1388 aa22.86■■□□□ 1.25
ATPAF1-214ENST00000576409 ARID3AQ99856 593 aa22.85■■□□□ 1.25
ATPAF1-214ENST00000576409 ANO8Q9HCE9 1232 aaPredicted RBP22.85■■□□□ 1.25
ATPAF1-214ENST00000576409 STK26Q9P289 416 aa22.85■■□□□ 1.25
ATPAF1-214ENST00000576409 COG6Q9Y2V7 657 aa22.85■■□□□ 1.25
ATPAF1-214ENST00000576409 UACAQ9BZF9 1416 aa22.85■■□□□ 1.25
ATPAF1-214ENST00000576409 APAF1O14727 1248 aa22.84■■□□□ 1.25
ATPAF1-214ENST00000576409 SOX12O15370 315 aa22.83■■□□□ 1.25
ATPAF1-214ENST00000576409 DNTTIP2Q5QJE6 756 aaKnown RBP22.83■■□□□ 1.25
ATPAF1-214ENST00000576409 CNTLNQ9NXG0 1405 aa22.83■■□□□ 1.24
ATPAF1-214ENST00000576409 RAD54L2Q9Y4B4 1467 aa22.82■■□□□ 1.24
ATPAF1-214ENST00000576409 POGKQ9P215 609 aa22.82■■□□□ 1.24
ATPAF1-214ENST00000576409 NUTM2DQ5VT03 806 aaPredicted RBP22.81■■□□□ 1.24
ATPAF1-214ENST00000576409 ITPRIPQ8IWB1 547 aa22.81■■□□□ 1.24
ATPAF1-214ENST00000576409 SRPK2P78362 688 aaKnown RBP22.8■■□□□ 1.24
ATPAF1-214ENST00000576409 FAM161AQ3B820 660 aa22.8■■□□□ 1.24
ATPAF1-214ENST00000576409 GGT6Q6P531 493 aa22.79■■□□□ 1.24
ATPAF1-214ENST00000576409 BRPF3Q9ULD4 1205 aa22.79■■□□□ 1.24
ATPAF1-214ENST00000576409 L1TD1Q5T7N2 865 aaKnown RBP22.78■■□□□ 1.24
ATPAF1-214ENST00000576409 PNNQ9H307 717 aaKnown RBP22.78■■□□□ 1.24
ATPAF1-214ENST00000576409 USP35Q9P2H5 1018 aa22.78■■□□□ 1.24
ATPAF1-214ENST00000576409 NFKBIBQ15653 356 aa22.76■■□□□ 1.23
ATPAF1-214ENST00000576409 CENPJQ9HC77 1338 aaPredicted RBP22.75■■□□□ 1.23
ATPAF1-214ENST00000576409 CENPQQ7L2Z9 268 aaPredicted RBP22.75■■□□□ 1.23
ATPAF1-214ENST00000576409 C14orf37Q86TY3 774 aa22.75■■□□□ 1.23
ATPAF1-214ENST00000576409 FGD5Q6ZNL6 1462 aa22.74■■□□□ 1.23
ATPAF1-214ENST00000576409 RWDD1Q9H446 243 aaPredicted RBP22.74■■□□□ 1.23
ATPAF1-214ENST00000576409 PRXQ9BXM0 1461 aa22.73■■□□□ 1.23
ATPAF1-214ENST00000576409 SMC4Q9NTJ3 1288 aa22.73■■□□□ 1.23
ATPAF1-214ENST00000576409 MYOM3Q5VTT5 1437 aa22.71■■□□□ 1.23
ATPAF1-214ENST00000576409 ADAMTS8Q9UP79 889 aa22.71■■□□□ 1.23
ATPAF1-214ENST00000576409 PNISRQ8TF01 805 aaKnown RBP22.7■■□□□ 1.22
ATPAF1-214ENST00000576409 GOLGA6L3A6NEY3 463 aa22.7■■□□□ 1.22
ATPAF1-214ENST00000576409 TRAK1Q9UPV9 953 aa22.69■■□□□ 1.22
ATPAF1-214ENST00000576409 ELL2O00472 640 aaPredicted RBP22.69■■□□□ 1.22
ATPAF1-214ENST00000576409 MS4A1P11836 297 aa22.68■■□□□ 1.22
ATPAF1-214ENST00000576409 KIF3BO15066 747 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms