RNA–Protein interactions for RNA: ENST00000576222.1

PCDHGB3-201, Transcript of protocadherin gamma subfamily B, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGB3, Length 4,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGB3-201ENST00000576222 SLC4A3P48751 1232 aa16.83■□□□□ 0.28
PCDHGB3-201ENST00000576222 RRP1P56182 461 aaKnown RBP16.82■□□□□ 0.28
PCDHGB3-201ENST00000576222 NLRP13Q86W25 1043 aa16.82■□□□□ 0.28
PCDHGB3-201ENST00000576222 MS4A1P11836 297 aa16.81■□□□□ 0.28
PCDHGB3-201ENST00000576222 ARID4BQ4LE39 1312 aaPredicted RBP16.8■□□□□ 0.28
PCDHGB3-201ENST00000576222 GOLGA6L3A6NEY3 463 aa16.8■□□□□ 0.28
PCDHGB3-201ENST00000576222 KIF21BO75037 1637 aa16.8■□□□□ 0.28
PCDHGB3-201ENST00000576222 MSH5O43196 834 aa16.79■□□□□ 0.28
PCDHGB3-201ENST00000576222 PAK3O75914 559 aaPredicted RBP16.78■□□□□ 0.28
PCDHGB3-201ENST00000576222 MSNP26038 577 aaKnown RBP16.78■□□□□ 0.28
PCDHGB3-201ENST00000576222 CHMP7Q8WUX9 453 aaPredicted RBP16.78■□□□□ 0.28
PCDHGB3-201ENST00000576222 ROCK2O75116 1388 aaKnown RBP16.77■□□□□ 0.28
PCDHGB3-201ENST00000576222 ANO8Q9HCE9 1232 aaPredicted RBP16.77■□□□□ 0.27
PCDHGB3-201ENST00000576222 FAM161AQ3B820 660 aa16.76■□□□□ 0.27
PCDHGB3-201ENST00000576222 FHOD3Q2V2M9 1422 aa16.76■□□□□ 0.27
PCDHGB3-201ENST00000576222 CCDC18Q5T9S5 1454 aa16.75■□□□□ 0.27
PCDHGB3-201ENST00000576222 PLIN1O60240 522 aa16.75■□□□□ 0.27
PCDHGB3-201ENST00000576222 MYBBP1AQ9BQG0 1328 aaKnown RBP16.75■□□□□ 0.27
PCDHGB3-201ENST00000576222 KIF15Q9NS87 1388 aa16.74■□□□□ 0.27
PCDHGB3-201ENST00000576222 GOLGA2Q08379 1002 aa16.74■□□□□ 0.27
PCDHGB3-201ENST00000576222 CENPQQ7L2Z9 268 aaPredicted RBP16.74■□□□□ 0.27
PCDHGB3-201ENST00000576222 CASC1Q6TDU7 716 aa16.72■□□□□ 0.27
PCDHGB3-201ENST00000576222 RRBP1Q9P2E9 1410 aaKnown RBP16.72■□□□□ 0.27
PCDHGB3-201ENST00000576222 WASHC2AQ641Q2 1341 aa16.72■□□□□ 0.27
PCDHGB3-201ENST00000576222 IL27Q8NEV9 243 aa16.72■□□□□ 0.27
PCDHGB3-201ENST00000576222 GBP4Q96PP9 640 aa16.71■□□□□ 0.27
PCDHGB3-201ENST00000576222 CRBNQ96SW2 442 aa16.71■□□□□ 0.27
PCDHGB3-201ENST00000576222 CCDC7Q96M83 1385 aa16.71■□□□□ 0.27
PCDHGB3-201ENST00000576222 MAPK8IP3Q9UPT6 1336 aa16.71■□□□□ 0.26
PCDHGB3-201ENST00000576222 HSP90AA2PQ14568 343 aaPredicted RBP16.7■□□□□ 0.26
PCDHGB3-201ENST00000576222 RWDD1Q9H446 243 aaPredicted RBP16.7■□□□□ 0.26
PCDHGB3-201ENST00000576222 CNTLNQ9NXG0 1405 aa16.7■□□□□ 0.26
PCDHGB3-201ENST00000576222 SMARCA2P51531 1590 aa16.69■□□□□ 0.26
PCDHGB3-201ENST00000576222 NFKBIBQ15653 356 aa16.69■□□□□ 0.26
PCDHGB3-201ENST00000576222 STAG3Q9UJ98 1225 aa16.69■□□□□ 0.26
PCDHGB3-201ENST00000576222 SMARCA4P51532 1647 aa16.69■□□□□ 0.26
PCDHGB3-201ENST00000576222 CHMP4BQ9H444 224 aaKnown RBP16.68■□□□□ 0.26
PCDHGB3-201ENST00000576222 PHLDB1Q86UU1 1377 aa16.67■□□□□ 0.26
PCDHGB3-201ENST00000576222 PMFBP1Q8TBY8 1022 aa16.67■□□□□ 0.26
PCDHGB3-201ENST00000576222 ST20-MTHFSA0A0A6YYL1 179 aa16.67■□□□□ 0.26
PCDHGB3-201ENST00000576222 TPRNQ4KMQ1 711 aa16.66■□□□□ 0.26
PCDHGB3-201ENST00000576222 KIF7Q2M1P5 1343 aa16.66■□□□□ 0.26
PCDHGB3-201ENST00000576222 NUP155O75694 1391 aa16.66■□□□□ 0.26
PCDHGB3-201ENST00000576222 EIF4G1Q04637 1599 aaKnown RBP16.66■□□□□ 0.26
PCDHGB3-201ENST00000576222 PTMSP20962 102 aa16.66■□□□□ 0.26
PCDHGB3-201ENST00000576222 PLCB2Q00722 1185 aa16.65■□□□□ 0.26
PCDHGB3-201ENST00000576222 VSIG10Q8N0Z9 540 aa16.65■□□□□ 0.26
PCDHGB3-201ENST00000576222 MFAP1P55081 439 aaKnown RBP16.64■□□□□ 0.25
PCDHGB3-201ENST00000576222 UACAQ9BZF9 1416 aa16.64■□□□□ 0.25
PCDHGB3-201ENST00000576222 USP47Q96K76 1375 aa16.63■□□□□ 0.25
PCDHGB3-201ENST00000576222 PRKCSHP14314 528 aaPredicted RBP16.63■□□□□ 0.25
PCDHGB3-201ENST00000576222 U2SURPO15042 1029 aaKnown RBP16.63■□□□□ 0.25
PCDHGB3-201ENST00000576222 BRPF3Q9ULD4 1205 aa16.63■□□□□ 0.25
PCDHGB3-201ENST00000576222 MORC1Q86VD1 984 aa16.62■□□□□ 0.25
PCDHGB3-201ENST00000576222 CCDC146Q8IYE0 955 aa16.6■□□□□ 0.25
PCDHGB3-201ENST00000576222 CENPJQ9HC77 1338 aaPredicted RBP16.59■□□□□ 0.25
PCDHGB3-201ENST00000576222 ANKRD30AQ9BXX3 1397 aa16.59■□□□□ 0.25
PCDHGB3-201ENST00000576222 ARAP1Q96P48 1450 aa16.59■□□□□ 0.25
PCDHGB3-201ENST00000576222 LRRC9Q6ZRR7 1453 aa16.59■□□□□ 0.25
PCDHGB3-201ENST00000576222 WDR97A6NE52 1622 aa16.58■□□□□ 0.25
PCDHGB3-201ENST00000576222 CLUAP1Q96AJ1 413 aa16.58■□□□□ 0.24
PCDHGB3-201ENST00000576222 SENP3Q9H4L4 574 aaPredicted RBP16.58■□□□□ 0.24
PCDHGB3-201ENST00000576222 FGD6Q6ZV73 1430 aa16.57■□□□□ 0.24
PCDHGB3-201ENST00000576222 AKNAQ7Z591 1439 aa16.57■□□□□ 0.24
PCDHGB3-201ENST00000576222 CCDC184Q52MB2 194 aa16.57■□□□□ 0.24
PCDHGB3-201ENST00000576222 DDX11L8A8MPP1 907 aa16.56■□□□□ 0.24
PCDHGB3-201ENST00000576222 ARID3AQ99856 593 aa16.56■□□□□ 0.24
PCDHGB3-201ENST00000576222 PANK3Q9H999 370 aa16.56■□□□□ 0.24
PCDHGB3-201ENST00000576222 CHAF1AQ13111 956 aaPredicted RBP16.55■□□□□ 0.24
PCDHGB3-201ENST00000576222 ITPRIPQ8IWB1 547 aa16.55■□□□□ 0.24
PCDHGB3-201ENST00000576222 ATAD2BQ9ULI0 1458 aa16.55■□□□□ 0.24
PCDHGB3-201ENST00000576222 IPO8O15397 1037 aaKnown RBP16.55■□□□□ 0.24
PCDHGB3-201ENST00000576222 BACH2Q9BYV9 841 aa16.55■□□□□ 0.24
PCDHGB3-201ENST00000576222 CFAP44Q96MT7 982 aa16.54■□□□□ 0.24
PCDHGB3-201ENST00000576222 CGNL1Q0VF96 1302 aa16.53■□□□□ 0.24
PCDHGB3-201ENST00000576222 TDRD9Q8NDG6 1382 aaKnown RBP16.52■□□□□ 0.24
PCDHGB3-201ENST00000576222 CALD1Q05682 793 aaKnown RBP16.52■□□□□ 0.24
PCDHGB3-201ENST00000576222 IGF1RP08069 1367 aa16.52■□□□□ 0.23
PCDHGB3-201ENST00000576222 FRAT2O75474 233 aaPredicted RBP16.51■□□□□ 0.23
PCDHGB3-201ENST00000576222 U2AF1L5P0DN76 240 aaPredicted RBP16.51■□□□□ 0.23
PCDHGB3-201ENST00000576222 U2AF1Q01081 240 aaKnown RBP eCLIP16.51■□□□□ 0.23
PCDHGB3-201ENST00000576222 KIAA2012Q0VF49 1180 aa16.5■□□□□ 0.23
PCDHGB3-201ENST00000576222 ZBTB7CA1YPR0 619 aa16.5■□□□□ 0.23
PCDHGB3-201ENST00000576222 CDK11BP21127 795 aaKnown RBP16.5■□□□□ 0.23
PCDHGB3-201ENST00000576222 COG6Q9Y2V7 657 aa16.5■□□□□ 0.23
PCDHGB3-201ENST00000576222 FOXD4L1Q9NU39 408 aa16.5■□□□□ 0.23
PCDHGB3-201ENST00000576222 SMG6Q86US8 1419 aaKnown RBP16.5■□□□□ 0.23
PCDHGB3-201ENST00000576222 SMC4Q9NTJ3 1288 aa16.49■□□□□ 0.23
PCDHGB3-201ENST00000576222 E9PSI1 815 aa16.48■□□□□ 0.23
PCDHGB3-201ENST00000576222 BRD4O60885 1362 aaPredicted RBP16.48■□□□□ 0.23
PCDHGB3-201ENST00000576222 ERICH3Q5RHP9 1530 aa16.48■□□□□ 0.23
PCDHGB3-201ENST00000576222 CDCA7LQ96GN5 454 aa16.47■□□□□ 0.23
PCDHGB3-201ENST00000576222 CHMP5Q9NZZ3 219 aa16.47■□□□□ 0.23
PCDHGB3-201ENST00000576222 MYOM3Q5VTT5 1437 aa16.47■□□□□ 0.23
PCDHGB3-201ENST00000576222 ZRSR1Q15695 479 aaKnown RBP16.47■□□□□ 0.23
PCDHGB3-201ENST00000576222 NPM1P06748 294 aaKnown RBP eCLIP16.46■□□□□ 0.23
PCDHGB3-201ENST00000576222 FAM43AQ8N2R8 423 aa16.46■□□□□ 0.23
PCDHGB3-201ENST00000576222 SKOR2Q2VWA4 1001 aaPredicted RBP16.46■□□□□ 0.23
PCDHGB3-201ENST00000576222 MCCP23508 829 aa16.45■□□□□ 0.22
PCDHGB3-201ENST00000576222 ESF1Q9H501 851 aaKnown RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms