RNA–Protein interactions for RNA: ENST00000576222.1

PCDHGB3-201, Transcript of protocadherin gamma subfamily B, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGB3, Length 4,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGB3-201ENST00000576222 NISCHQ9Y2I1 1504 aa22.27■■□□□ 1.16
PCDHGB3-201ENST00000576222 DCAF8L2P0C7V8 631 aa21.72■■□□□ 1.07
PCDHGB3-201ENST00000576222 SUPT5HO00267 1087 aaKnown RBP21.71■■□□□ 1.07
PCDHGB3-201ENST00000576222 SHROOM4Q9ULL8 1493 aa21.32■■□□□ 1
PCDHGB3-201ENST00000576222 PCGF6Q9BYE7 350 aa21.04■□□□□ 0.96
PCDHGB3-201ENST00000576222 PELP1Q8IZL8 1130 aaKnown RBP20.78■□□□□ 0.92
PCDHGB3-201ENST00000576222 EHMT2Q96KQ7 1210 aa20.63■□□□□ 0.89
PCDHGB3-201ENST00000576222 HRCP23327 699 aa20.61■□□□□ 0.89
PCDHGB3-201ENST00000576222 ZEB1P37275 1124 aaPredicted RBP20.54■□□□□ 0.88
PCDHGB3-201ENST00000576222 CENPBP07199 599 aaPredicted RBP20.38■□□□□ 0.85
PCDHGB3-201ENST00000576222 FAM9AQ8IZU1 332 aaPredicted RBP20.35■□□□□ 0.85
PCDHGB3-201ENST00000576222 MYT1Q01538 1121 aa20.31■□□□□ 0.84
PCDHGB3-201ENST00000576222 TRIM26Q12899 539 aaPredicted RBP20.17■□□□□ 0.82
PCDHGB3-201ENST00000576222 PPARGC1BQ86YN6 1023 aaKnown RBP20.17■□□□□ 0.82
PCDHGB3-201ENST00000576222 CCER1Q8TC90 406 aaPredicted RBP20.15■□□□□ 0.82
PCDHGB3-201ENST00000576222 CHIC1Q5VXU3 224 aa20.07■□□□□ 0.8
PCDHGB3-201ENST00000576222 TTBK1Q5TCY1 1321 aaPredicted RBP20.07■□□□□ 0.8
PCDHGB3-201ENST00000576222 TRIM41Q8WV44 630 aa20.06■□□□□ 0.8
PCDHGB3-201ENST00000576222 APLP2Q06481 763 aa19.98■□□□□ 0.79
PCDHGB3-201ENST00000576222 LOC105371045A0A1W2PR82 267 aa19.92■□□□□ 0.78
PCDHGB3-201ENST00000576222 YTHDC1Q96MU7 727 aaKnown RBP19.86■□□□□ 0.77
PCDHGB3-201ENST00000576222 ERICH6Q7L0X2 663 aa19.62■□□□□ 0.73
PCDHGB3-201ENST00000576222 UBTFP17480 764 aaKnown RBP19.54■□□□□ 0.72
PCDHGB3-201ENST00000576222 DIEXFQ68CQ4 756 aaKnown RBP19.5■□□□□ 0.71
PCDHGB3-201ENST00000576222 NEFLP07196 543 aa19.46■□□□□ 0.71
PCDHGB3-201ENST00000576222 RANGAP1P46060 587 aaPredicted RBP19.46■□□□□ 0.71
PCDHGB3-201ENST00000576222 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.45■□□□□ 0.7
PCDHGB3-201ENST00000576222 GTF3C3Q9Y5Q9 886 aa19.43■□□□□ 0.7
PCDHGB3-201ENST00000576222 ACIN1Q9UKV3 1341 aaKnown RBP19.31■□□□□ 0.68
PCDHGB3-201ENST00000576222 HNRNPUL2Q1KMD3 747 aaKnown RBP19.21■□□□□ 0.67
PCDHGB3-201ENST00000576222 DCAF1Q9Y4B6 1507 aa19.14■□□□□ 0.65
PCDHGB3-201ENST00000576222 SCAF1Q9H7N4 1312 aaKnown RBP19.11■□□□□ 0.65
PCDHGB3-201ENST00000576222 ATP1B4Q9UN42 357 aaPredicted RBP19.03■□□□□ 0.64
PCDHGB3-201ENST00000576222 ZNF316A6NFI3 1004 aaPredicted RBP19.03■□□□□ 0.64
PCDHGB3-201ENST00000576222 NEUROD1Q13562 356 aa18.98■□□□□ 0.63
PCDHGB3-201ENST00000576222 ITGAEP38570 1179 aa18.94■□□□□ 0.62
PCDHGB3-201ENST00000576222 MYO15BQ96JP2 1530 aa18.91■□□□□ 0.62
PCDHGB3-201ENST00000576222 BCANQ96GW7 911 aa18.83■□□□□ 0.6
PCDHGB3-201ENST00000576222 CLSPNQ9HAW4 1339 aa18.65■□□□□ 0.58
PCDHGB3-201ENST00000576222 ZCCHC6Q5VYS8 1495 aaKnown RBP18.63■□□□□ 0.57
PCDHGB3-201ENST00000576222 RTL5Q5HYW3 569 aaPredicted RBP18.63■□□□□ 0.57
PCDHGB3-201ENST00000576222 DAXXQ9UER7 740 aaPredicted RBP18.58■□□□□ 0.57
PCDHGB3-201ENST00000576222 CCDC180Q9P1Z9 1646 aa18.57■□□□□ 0.56
PCDHGB3-201ENST00000576222 CDK11AQ9UQ88 783 aaPredicted RBP18.57■□□□□ 0.56
PCDHGB3-201ENST00000576222 ANP32CO43423 234 aa18.53■□□□□ 0.56
PCDHGB3-201ENST00000576222 MIER1Q8N108 512 aa18.52■□□□□ 0.56
PCDHGB3-201ENST00000576222 POLR3GLQ9BT43 218 aa18.52■□□□□ 0.55
PCDHGB3-201ENST00000576222 CSRNP3Q8WYN3 585 aa18.49■□□□□ 0.55
PCDHGB3-201ENST00000576222 CNGB1Q14028 1251 aaPredicted RBP18.48■□□□□ 0.55
PCDHGB3-201ENST00000576222 FKBP8Q14318 412 aa18.46■□□□□ 0.55
PCDHGB3-201ENST00000576222 FAM50AQ14320 339 aaKnown RBP18.44■□□□□ 0.54
PCDHGB3-201ENST00000576222 ANP32EQ9BTT0 268 aa18.27■□□□□ 0.52
PCDHGB3-201ENST00000576222 DDX10Q13206 875 aaKnown RBP18.24■□□□□ 0.51
PCDHGB3-201ENST00000576222 TRIM52Q96A61 297 aa18.2■□□□□ 0.5
PCDHGB3-201ENST00000576222 MYT1LQ9UL68 1186 aa18.2■□□□□ 0.5
PCDHGB3-201ENST00000576222 ANP32AP39687 249 aaKnown RBP18.19■□□□□ 0.5
PCDHGB3-201ENST00000576222 HNRNPUQ00839 825 aaKnown RBP eCLIP18.14■□□□□ 0.49
PCDHGB3-201ENST00000576222 SUPT16HQ9Y5B9 1047 aaKnown RBP18.09■□□□□ 0.49
PCDHGB3-201ENST00000576222 ABCC9O60706 1549 aa18.09■□□□□ 0.49
PCDHGB3-201ENST00000576222 SCRIBQ14160 1630 aa18.08■□□□□ 0.48
PCDHGB3-201ENST00000576222 RSF1Q96T23 1441 aaPredicted RBP18.08■□□□□ 0.48
PCDHGB3-201ENST00000576222 CEP162Q5TB80 1403 aa18.06■□□□□ 0.48
PCDHGB3-201ENST00000576222 PABPN1Q86U42 306 aaKnown RBP eCLIP18.04■□□□□ 0.48
PCDHGB3-201ENST00000576222 NPM2Q86SE8 214 aaKnown RBP18.01■□□□□ 0.47
PCDHGB3-201ENST00000576222 NBR1Q14596 966 aa18.01■□□□□ 0.47
PCDHGB3-201ENST00000576222 TONSLQ96HA7 1378 aa18■□□□□ 0.47
PCDHGB3-201ENST00000576222 ZNF326Q5BKZ1 582 aaKnown RBP17.98■□□□□ 0.47
PCDHGB3-201ENST00000576222 BCL11AQ9H165 835 aa17.97■□□□□ 0.47
PCDHGB3-201ENST00000576222 IRX6P78412 446 aaPredicted RBP17.97■□□□□ 0.47
PCDHGB3-201ENST00000576222 CLIP1P30622 1438 aa17.97■□□□□ 0.47
PCDHGB3-201ENST00000576222 FAM9BQ8IZU0 186 aa17.95■□□□□ 0.46
PCDHGB3-201ENST00000576222 P3H3Q8IVL6 736 aa17.94■□□□□ 0.46
PCDHGB3-201ENST00000576222 EIF5BO60841 1220 aaKnown RBP17.94■□□□□ 0.46
PCDHGB3-201ENST00000576222 ZBTB47Q9UFB7 747 aaPredicted RBP17.93■□□□□ 0.46
PCDHGB3-201ENST00000576222 TNIKQ9UKE5 1360 aa17.92■□□□□ 0.46
PCDHGB3-201ENST00000576222 HIRIP3Q9BW71 556 aaPredicted RBP17.91■□□□□ 0.46
PCDHGB3-201ENST00000576222 CCDC136Q96JN2 1154 aa17.89■□□□□ 0.45
PCDHGB3-201ENST00000576222 EEA1Q15075 1411 aa17.89■□□□□ 0.45
PCDHGB3-201ENST00000576222 GOLGA3Q08378 1498 aa17.86■□□□□ 0.45
PCDHGB3-201ENST00000576222 MRS2Q9HD23 443 aa17.81■□□□□ 0.44
PCDHGB3-201ENST00000576222 TSHZ2Q9NRE2 1034 aa17.81■□□□□ 0.44
PCDHGB3-201ENST00000576222 RBM19Q9Y4C8 960 aaKnown RBP17.79■□□□□ 0.44
PCDHGB3-201ENST00000576222 RB1CC1Q8TDY2 1594 aa17.76■□□□□ 0.43
PCDHGB3-201ENST00000576222 SLC4A1APQ9BWU0 796 aaKnown RBP17.74■□□□□ 0.43
PCDHGB3-201ENST00000576222 TMC1Q8TDI8 760 aa17.69■□□□□ 0.42
PCDHGB3-201ENST00000576222 PPP4R2Q9NY27 417 aa17.68■□□□□ 0.42
PCDHGB3-201ENST00000576222 CANXP27824 592 aaKnown RBP17.67■□□□□ 0.42
PCDHGB3-201ENST00000576222 SALL2Q9Y467 1007 aaPredicted RBP17.67■□□□□ 0.42
PCDHGB3-201ENST00000576222 EIF4G2P78344 907 aaKnown RBP eCLIP17.66■□□□□ 0.42
PCDHGB3-201ENST00000576222 CEP164Q9UPV0 1460 aa17.65■□□□□ 0.42
PCDHGB3-201ENST00000576222 SIN3AQ96ST3 1273 aa17.63■□□□□ 0.41
PCDHGB3-201ENST00000576222 NOP58Q9Y2X3 529 aaKnown RBP17.63■□□□□ 0.41
PCDHGB3-201ENST00000576222 WRNQ14191 1432 aaPredicted RBP eCLIP17.62■□□□□ 0.41
PCDHGB3-201ENST00000576222 ARID3CA6NKF2 412 aa17.61■□□□□ 0.41
PCDHGB3-201ENST00000576222 GLIPR1L2Q4G1C9 344 aa17.61■□□□□ 0.41
PCDHGB3-201ENST00000576222 CHIC2Q9UKJ5 165 aa17.6■□□□□ 0.41
PCDHGB3-201ENST00000576222 DEKP35659 375 aaKnown RBP17.6■□□□□ 0.41
PCDHGB3-201ENST00000576222 SOGA1O94964 1423 aa17.59■□□□□ 0.41
PCDHGB3-201ENST00000576222 CCER2I3L3R5 266 aa17.59■□□□□ 0.41
PCDHGB3-201ENST00000576222 B4GALNT3Q6L9W6 998 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms