RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CTTNBP2Q8WZ74 1663 aa28.77■■■□□ 2.2
VPS53-218ENST00000575207 FAM9AQ8IZU1 332 aaPredicted RBP28.77■■■□□ 2.2
VPS53-218ENST00000575207 NCOA1Q15788 1441 aa28.72■■■□□ 2.19
VPS53-218ENST00000575207 HECW1Q76N89 1606 aa28.72■■■□□ 2.19
VPS53-218ENST00000575207 CFAP74Q9C0B2 1584 aa28.71■■■□□ 2.19
VPS53-218ENST00000575207 ATP10AO60312 1499 aa28.71■■■□□ 2.19
VPS53-218ENST00000575207 C9orf84Q5VXU9 1444 aa28.68■■■□□ 2.18
VPS53-218ENST00000575207 HSPA1LP34931 641 aa28.66■■■□□ 2.18
VPS53-218ENST00000575207 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.64■■■□□ 2.18
VPS53-218ENST00000575207 HNRNPUL2Q1KMD3 747 aaKnown RBP28.64■■■□□ 2.18
VPS53-218ENST00000575207 ZNF335Q9H4Z2 1342 aaPredicted RBP28.63■■■□□ 2.17
VPS53-218ENST00000575207 PHF23Q9BUL5 403 aaPredicted RBP28.6■■■□□ 2.17
VPS53-218ENST00000575207 TRAPPC8Q9Y2L5 1435 aa28.58■■■□□ 2.17
VPS53-218ENST00000575207 P3H3Q8IVL6 736 aa28.56■■■□□ 2.16
VPS53-218ENST00000575207 RAPGEF6Q8TEU7 1601 aa28.55■■■□□ 2.16
VPS53-218ENST00000575207 SCAPERQ9BY12 1400 aa28.55■■■□□ 2.16
VPS53-218ENST00000575207 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.54■■■□□ 2.16
VPS53-218ENST00000575207 PLEKHD1A6NEE1 506 aa28.53■■■□□ 2.16
VPS53-218ENST00000575207 C3P01024 1663 aa28.52■■■□□ 2.16
VPS53-218ENST00000575207 NUP153P49790 1475 aaKnown RBP28.51■■■□□ 2.15
VPS53-218ENST00000575207 CAMSAP1Q5T5Y3 1602 aa28.49■■■□□ 2.15
VPS53-218ENST00000575207 SCAF1Q9H7N4 1312 aaKnown RBP28.44■■■□□ 2.14
VPS53-218ENST00000575207 NCKAP5LQ9HCH0 1330 aa28.44■■■□□ 2.14
VPS53-218ENST00000575207 PIP4K2BP78356 416 aa28.44■■■□□ 2.14
VPS53-218ENST00000575207 TOM1O60784 492 aa28.41■■■□□ 2.14
VPS53-218ENST00000575207 PLCH2O75038 1416 aa28.39■■■□□ 2.14
VPS53-218ENST00000575207 PKD2Q13563 968 aa28.38■■■□□ 2.13
VPS53-218ENST00000575207 ESF1Q9H501 851 aaKnown RBP28.36■■■□□ 2.13
VPS53-218ENST00000575207 SAMD9Q5K651 1589 aa28.36■■■□□ 2.13
VPS53-218ENST00000575207 REREQ9P2R6 1566 aa28.36■■■□□ 2.13
VPS53-218ENST00000575207 PRXQ9BXM0 1461 aa28.35■■■□□ 2.13
VPS53-218ENST00000575207 PLA2R1Q13018 1463 aa28.34■■■□□ 2.13
VPS53-218ENST00000575207 AGLP35573 1532 aa28.33■■■□□ 2.13
VPS53-218ENST00000575207 NPATQ14207 1427 aa28.33■■■□□ 2.13
VPS53-218ENST00000575207 CNTLNQ9NXG0 1405 aa28.31■■■□□ 2.12
VPS53-218ENST00000575207 TCOF1Q13428 1488 aaKnown RBP28.31■■■□□ 2.12
VPS53-218ENST00000575207 ZNF518AQ6AHZ1 1483 aa28.3■■■□□ 2.12
VPS53-218ENST00000575207 RGS17Q9UGC6 210 aaPredicted RBP28.3■■■□□ 2.12
VPS53-218ENST00000575207 KDM5CP41229 1560 aa28.28■■■□□ 2.12
VPS53-218ENST00000575207 DIP2CQ9Y2E4 1556 aa28.28■■■□□ 2.12
VPS53-218ENST00000575207 EFCAB2Q5VUJ9 269 aa28.27■■■□□ 2.12
VPS53-218ENST00000575207 PPP6R1Q9UPN7 881 aa28.26■■■□□ 2.11
VPS53-218ENST00000575207 AFAP1Q8N556 730 aa28.25■■■□□ 2.11
VPS53-218ENST00000575207 CPS1P31327 1500 aa28.22■■■□□ 2.11
VPS53-218ENST00000575207 PTPRKQ15262 1439 aa28.18■■■□□ 2.1
VPS53-218ENST00000575207 MLH3Q9UHC1 1453 aa28.16■■■□□ 2.1
VPS53-218ENST00000575207 ABCA6Q8N139 1617 aa28.15■■■□□ 2.1
VPS53-218ENST00000575207 ALKQ9UM73 1620 aa28.15■■■□□ 2.1
VPS53-218ENST00000575207 MYT1LQ9UL68 1186 aa28.15■■■□□ 2.1
VPS53-218ENST00000575207 ZNF142P52746 1687 aaPredicted RBP28.15■■■□□ 2.1
VPS53-218ENST00000575207 ZMYM3Q14202 1370 aa28.14■■■□□ 2.1
VPS53-218ENST00000575207 MROH2AA6NES4 1674 aa28.13■■■□□ 2.09
VPS53-218ENST00000575207 SHANK2Q9UPX8 1470 aa28.1■■■□□ 2.09
VPS53-218ENST00000575207 CEP170BQ9Y4F5 1589 aaPredicted RBP28.1■■■□□ 2.09
VPS53-218ENST00000575207 MYO3AQ8NEV4 1616 aa28.08■■■□□ 2.09
VPS53-218ENST00000575207 MYO5CQ9NQX4 1742 aa28.07■■■□□ 2.08
VPS53-218ENST00000575207 SUPT6HQ7KZ85 1726 aaKnown RBP28.05■■■□□ 2.08
VPS53-218ENST00000575207 POTEAQ6S8J7 498 aa28.04■■■□□ 2.08
VPS53-218ENST00000575207 CDK13Q14004 1512 aaKnown RBP28.01■■■□□ 2.07
VPS53-218ENST00000575207 SRCAPQ6ZRS2 3230 aa27.98■■■□□ 2.07
VPS53-218ENST00000575207 ARHGAP5Q13017 1502 aa27.97■■■□□ 2.07
VPS53-218ENST00000575207 SENP3Q9H4L4 574 aaPredicted RBP27.96■■■□□ 2.07
VPS53-218ENST00000575207 NEURL4Q96JN8 1562 aa27.93■■■□□ 2.06
VPS53-218ENST00000575207 VWDEQ8N2E2 1590 aa27.92■■■□□ 2.06
VPS53-218ENST00000575207 A2ML1A8K2U0 1454 aa27.91■■■□□ 2.06
VPS53-218ENST00000575207 DNMT1P26358 1616 aaKnown RBP27.9■■■□□ 2.06
VPS53-218ENST00000575207 KIDINS220Q9ULH0 1771 aa27.9■■■□□ 2.06
VPS53-218ENST00000575207 POLR1AO95602 1720 aaPredicted RBP27.87■■■□□ 2.05
VPS53-218ENST00000575207 RANGAP1P46060 587 aaPredicted RBP27.86■■■□□ 2.05
VPS53-218ENST00000575207 KIF14Q15058 1648 aa27.85■■■□□ 2.05
VPS53-218ENST00000575207 CLTCQ00610 1675 aaKnown RBP27.85■■■□□ 2.05
VPS53-218ENST00000575207 CDK11AQ9UQ88 783 aaPredicted RBP27.82■■■□□ 2.04
VPS53-218ENST00000575207 ABCC1P33527 1531 aa27.82■■■□□ 2.04
VPS53-218ENST00000575207 SETD1AO15047 1707 aaKnown RBP27.81■■■□□ 2.04
VPS53-218ENST00000575207 LRRC7Q96NW7 1537 aa27.79■■■□□ 2.04
VPS53-218ENST00000575207 RNF17Q9BXT8 1623 aaKnown RBP27.78■■■□□ 2.04
VPS53-218ENST00000575207 UPF1Q92900 1129 aaKnown RBP eCLIP27.78■■■□□ 2.04
VPS53-218ENST00000575207 CDC42BPBQ9Y5S2 1711 aa27.77■■■□□ 2.04
VPS53-218ENST00000575207 TROQ12816 1431 aaPredicted RBP27.76■■■□□ 2.04
VPS53-218ENST00000575207 ITSN2Q9NZM3 1697 aa27.76■■■□□ 2.03
VPS53-218ENST00000575207 ANKLE2Q86XL3 938 aa27.76■■■□□ 2.03
VPS53-218ENST00000575207 MED14O60244 1454 aa27.75■■■□□ 2.03
VPS53-218ENST00000575207 NPHP4O75161 1426 aaPredicted RBP27.71■■■□□ 2.03
VPS53-218ENST00000575207 CSRNP3Q8WYN3 585 aa27.69■■■□□ 2.02
VPS53-218ENST00000575207 SYNMO15061 1565 aa27.68■■■□□ 2.02
VPS53-218ENST00000575207 PLXNC1O60486 1568 aa27.68■■■□□ 2.02
VPS53-218ENST00000575207 SAMD9LQ8IVG5 1584 aa27.68■■■□□ 2.02
VPS53-218ENST00000575207 CLIP1P30622 1438 aa27.67■■■□□ 2.02
VPS53-218ENST00000575207 GGT6Q6P531 493 aa27.67■■■□□ 2.02
VPS53-218ENST00000575207 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.67■■■□□ 2.02
VPS53-218ENST00000575207 STRCP1A6NGW2 1772 aa27.67■■■□□ 2.02
VPS53-218ENST00000575207 DEPDC5O75140 1603 aa27.65■■■□□ 2.02
VPS53-218ENST00000575207 PREX2Q70Z35 1606 aa27.64■■■□□ 2.02
VPS53-218ENST00000575207 THEMISQ8N1K5 641 aaPredicted RBP27.63■■■□□ 2.01
VPS53-218ENST00000575207 FAM135BQ49AJ0 1406 aa27.63■■■□□ 2.01
VPS53-218ENST00000575207 TNRQ92752 1358 aa27.62■■■□□ 2.01
VPS53-218ENST00000575207 ATP1B4Q9UN42 357 aaPredicted RBP27.62■■■□□ 2.01
VPS53-218ENST00000575207 SPAG9O60271 1321 aaKnown RBP27.62■■■□□ 2.01
VPS53-218ENST00000575207 A2MP01023 1474 aa27.61■■■□□ 2.01
VPS53-218ENST00000575207 IQGAP1P46940 1657 aa27.57■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms