RNA–Protein interactions for RNA: ENST00000568877.5

COMMD4-224, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 770 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-224ENST00000568877 NEO1Q92859 1461 aa25.98■■□□□ 1.75
COMMD4-224ENST00000568877 CDC42BPAQ5VT25 1732 aa25.98■■□□□ 1.75
COMMD4-224ENST00000568877 PHLDB1Q86UU1 1377 aa25.97■■□□□ 1.75
COMMD4-224ENST00000568877 CFDP1Q9UEE9 299 aaPredicted RBP25.96■■□□□ 1.75
COMMD4-224ENST00000568877 CDC42BPBQ9Y5S2 1711 aa25.96■■□□□ 1.75
COMMD4-224ENST00000568877 AKNAQ7Z591 1439 aa25.94■■□□□ 1.74
COMMD4-224ENST00000568877 CFAP74Q9C0B2 1584 aa25.94■■□□□ 1.74
COMMD4-224ENST00000568877 ITSN2Q9NZM3 1697 aa25.92■■□□□ 1.74
COMMD4-224ENST00000568877 MYOM3Q5VTT5 1437 aa25.91■■□□□ 1.74
COMMD4-224ENST00000568877 ZNF777Q9ULD5 760 aaPredicted RBP25.9■■□□□ 1.74
COMMD4-224ENST00000568877 ADGRL1O94910 1474 aa25.86■■□□□ 1.73
COMMD4-224ENST00000568877 COL17A1Q9UMD9 1497 aaPredicted RBP25.86■■□□□ 1.73
COMMD4-224ENST00000568877 MIA2Q96PC5 1412 aa25.86■■□□□ 1.73
COMMD4-224ENST00000568877 KDM6BO15054 1643 aa25.85■■□□□ 1.73
COMMD4-224ENST00000568877 SCAPERQ9BY12 1400 aa25.84■■□□□ 1.73
COMMD4-224ENST00000568877 ZNF644Q9H582 1327 aaPredicted RBP25.84■■□□□ 1.73
COMMD4-224ENST00000568877 SAMD9LQ8IVG5 1584 aa25.83■■□□□ 1.73
COMMD4-224ENST00000568877 DENND4BO75064 1496 aaPredicted RBP25.81■■□□□ 1.72
COMMD4-224ENST00000568877 PLEKHH2Q8IVE3 1493 aa25.81■■□□□ 1.72
COMMD4-224ENST00000568877 ABCC1P33527 1531 aa25.81■■□□□ 1.72
COMMD4-224ENST00000568877 FGD6Q6ZV73 1430 aa25.8■■□□□ 1.72
COMMD4-224ENST00000568877 KIAA1107Q9UPP5 1409 aa25.8■■□□□ 1.72
COMMD4-224ENST00000568877 RAPGEF3O95398 923 aa25.79■■□□□ 1.72
COMMD4-224ENST00000568877 CAMSAP2Q08AD1 1489 aa25.78■■□□□ 1.72
COMMD4-224ENST00000568877 ARHGEF12Q9NZN5 1544 aa25.78■■□□□ 1.72
COMMD4-224ENST00000568877 HNRNPMP52272 730 aaKnown RBP eCLIP25.77■■□□□ 1.72
COMMD4-224ENST00000568877 SYCP2Q9BX26 1530 aa25.75■■□□□ 1.71
COMMD4-224ENST00000568877 POGZQ7Z3K3 1410 aa25.75■■□□□ 1.71
COMMD4-224ENST00000568877 PTPN23Q9H3S7 1636 aa25.74■■□□□ 1.71
COMMD4-224ENST00000568877 TRAPPC8Q9Y2L5 1435 aa25.73■■□□□ 1.71
COMMD4-224ENST00000568877 AFAP1Q8N556 730 aa25.73■■□□□ 1.71
COMMD4-224ENST00000568877 FRMPD1Q5SYB0 1578 aa25.72■■□□□ 1.71
COMMD4-224ENST00000568877 TCOF1Q13428 1488 aaKnown RBP25.72■■□□□ 1.71
COMMD4-224ENST00000568877 ZNF518AQ6AHZ1 1483 aa25.72■■□□□ 1.71
COMMD4-224ENST00000568877 MBD5Q9P267 1494 aa25.72■■□□□ 1.71
COMMD4-224ENST00000568877 RICTORQ6R327 1708 aa25.71■■□□□ 1.71
COMMD4-224ENST00000568877 RSPH4AQ5TD94 716 aa25.69■■□□□ 1.7
COMMD4-224ENST00000568877 FAM50AQ14320 339 aaKnown RBP25.67■■□□□ 1.7
COMMD4-224ENST00000568877 KDM5CP41229 1560 aa25.65■■□□□ 1.7
COMMD4-224ENST00000568877 ARHGEF5Q12774 1597 aa25.65■■□□□ 1.7
COMMD4-224ENST00000568877 ZMYM4Q5VZL5 1548 aa25.64■■□□□ 1.7
COMMD4-224ENST00000568877 CCDC141Q6ZP82 1450 aa25.64■■□□□ 1.69
COMMD4-224ENST00000568877 RRBP1Q9P2E9 1410 aaKnown RBP25.63■■□□□ 1.69
COMMD4-224ENST00000568877 SPAG9O60271 1321 aaKnown RBP25.62■■□□□ 1.69
COMMD4-224ENST00000568877 MAGI2Q86UL8 1455 aa25.61■■□□□ 1.69
COMMD4-224ENST00000568877 MLH3Q9UHC1 1453 aa25.6■■□□□ 1.69
COMMD4-224ENST00000568877 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.6■■□□□ 1.69
COMMD4-224ENST00000568877 MYT1LQ9UL68 1186 aa25.6■■□□□ 1.69
COMMD4-224ENST00000568877 TSPY4P0CV99 314 aa25.59■■□□□ 1.69
COMMD4-224ENST00000568877 TSPY10P0CW01 314 aa25.59■■□□□ 1.69
COMMD4-224ENST00000568877 HECW2Q9P2P5 1572 aa25.57■■□□□ 1.68
COMMD4-224ENST00000568877 ABCC5O15440 1437 aa25.57■■□□□ 1.68
COMMD4-224ENST00000568877 DAPK1P53355 1430 aa25.56■■□□□ 1.68
COMMD4-224ENST00000568877 DNMT1P26358 1616 aaKnown RBP25.55■■□□□ 1.68
COMMD4-224ENST00000568877 YEATS2Q9ULM3 1422 aa25.55■■□□□ 1.68
COMMD4-224ENST00000568877 ZFYVE16Q7Z3T8 1539 aa25.55■■□□□ 1.68
COMMD4-224ENST00000568877 RTEL1-TNFRSF6BF6WH68 1400 aa25.54■■□□□ 1.68
COMMD4-224ENST00000568877 ATP7AQ04656 1500 aa25.53■■□□□ 1.68
COMMD4-224ENST00000568877 INO80Q9ULG1 1556 aaPredicted RBP25.52■■□□□ 1.68
COMMD4-224ENST00000568877 KIDINS220Q9ULH0 1771 aa25.51■■□□□ 1.67
COMMD4-224ENST00000568877 C9orf84Q5VXU9 1444 aa25.51■■□□□ 1.67
COMMD4-224ENST00000568877 ARHGEF40Q8TER5 1519 aa25.51■■□□□ 1.67
COMMD4-224ENST00000568877 SHANK2Q9UPX8 1470 aa25.5■■□□□ 1.67
COMMD4-224ENST00000568877 MAST1Q9Y2H9 1570 aa25.5■■□□□ 1.67
COMMD4-224ENST00000568877 CROCC2H7BZ55 1655 aa25.48■■□□□ 1.67
COMMD4-224ENST00000568877 ATP10AO60312 1499 aa25.47■■□□□ 1.67
COMMD4-224ENST00000568877 ITGAEP38570 1179 aa25.47■■□□□ 1.67
COMMD4-224ENST00000568877 DIP2CQ9Y2E4 1556 aa25.47■■□□□ 1.67
COMMD4-224ENST00000568877 ABCA6Q8N139 1617 aa25.46■■□□□ 1.67
COMMD4-224ENST00000568877 CHIC2Q9UKJ5 165 aa25.46■■□□□ 1.67
COMMD4-224ENST00000568877 PTPRKQ15262 1439 aa25.46■■□□□ 1.67
COMMD4-224ENST00000568877 ANKRD30AQ9BXX3 1397 aa25.41■■□□□ 1.66
COMMD4-224ENST00000568877 ADGRL2O95490 1459 aa25.39■■□□□ 1.65
COMMD4-224ENST00000568877 A2MP01023 1474 aa25.39■■□□□ 1.65
COMMD4-224ENST00000568877 PLXNC1O60486 1568 aa25.39■■□□□ 1.65
COMMD4-224ENST00000568877 REREQ9P2R6 1566 aa25.39■■□□□ 1.65
COMMD4-224ENST00000568877 NCOA1Q15788 1441 aa25.38■■□□□ 1.65
COMMD4-224ENST00000568877 RRP7BPQ9NSQ0 103 aa25.38■■□□□ 1.65
COMMD4-224ENST00000568877 ADGBQ8N7X0 1667 aa25.36■■□□□ 1.65
COMMD4-224ENST00000568877 ROCK1Q13464 1354 aa25.36■■□□□ 1.65
COMMD4-224ENST00000568877 DHX29Q7Z478 1369 aaKnown RBP25.36■■□□□ 1.65
COMMD4-224ENST00000568877 KIF15Q9NS87 1388 aa25.36■■□□□ 1.65
COMMD4-224ENST00000568877 ARID4BQ4LE39 1312 aaPredicted RBP25.36■■□□□ 1.65
COMMD4-224ENST00000568877 AGLP35573 1532 aa25.32■■□□□ 1.64
COMMD4-224ENST00000568877 DUOX2Q9NRD8 1548 aa25.32■■□□□ 1.64
COMMD4-224ENST00000568877 SIGLEC1Q9BZZ2 1709 aa25.32■■□□□ 1.64
COMMD4-224ENST00000568877 KIF3BO15066 747 aa25.25■■□□□ 1.63
COMMD4-224ENST00000568877 ERBINQ96RT1 1412 aa25.25■■□□□ 1.63
COMMD4-224ENST00000568877 MLECQ14165 292 aa25.24■■□□□ 1.63
COMMD4-224ENST00000568877 ANKRD50Q9ULJ7 1429 aa25.23■■□□□ 1.63
COMMD4-224ENST00000568877 TRIM26Q12899 539 aaPredicted RBP25.21■■□□□ 1.63
COMMD4-224ENST00000568877 EIF2AK4Q9P2K8 1649 aaKnown RBP25.2■■□□□ 1.62
COMMD4-224ENST00000568877 GGT6Q6P531 493 aa25.2■■□□□ 1.62
COMMD4-224ENST00000568877 BCORL1Q5H9F3 1711 aa25.2■■□□□ 1.62
COMMD4-224ENST00000568877 HFM1A2PYH4 1435 aa25.2■■□□□ 1.62
COMMD4-224ENST00000568877 NAIPQ13075 1403 aa25.2■■□□□ 1.62
COMMD4-224ENST00000568877 KDM4FA0A1W2PPD8 638 aa25.14■■□□□ 1.62
COMMD4-224ENST00000568877 PPP6R1Q9UPN7 881 aa25.14■■□□□ 1.62
COMMD4-224ENST00000568877 ADAMTSL3P82987 1691 aa25.13■■□□□ 1.61
COMMD4-224ENST00000568877 GCC2Q8IWJ2 1684 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms