RNA–Protein interactions for RNA: ENST00000568877.5

COMMD4-224, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 770 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-224ENST00000568877 NISCHQ9Y2I1 1504 aa39.89■■■■□ 3.98
COMMD4-224ENST00000568877 CCDC180Q9P1Z9 1646 aa35.23■■■■□ 3.23
COMMD4-224ENST00000568877 ABCC9O60706 1549 aa34.14■■■■□ 3.06
COMMD4-224ENST00000568877 ZCCHC6Q5VYS8 1495 aaKnown RBP33.31■■■□□ 2.92
COMMD4-224ENST00000568877 DCAF8L2P0C7V8 631 aa33.22■■■□□ 2.91
COMMD4-224ENST00000568877 NACADO15069 1562 aa33.07■■■□□ 2.88
COMMD4-224ENST00000568877 DCAF1Q9Y4B6 1507 aa33.02■■■□□ 2.88
COMMD4-224ENST00000568877 MYO15BQ96JP2 1530 aa33■■■□□ 2.87
COMMD4-224ENST00000568877 RB1CC1Q8TDY2 1594 aa33■■■□□ 2.87
COMMD4-224ENST00000568877 SCRIBQ14160 1630 aa32.21■■■□□ 2.75
COMMD4-224ENST00000568877 UNC13AQ9UPW8 1703 aa32.2■■■□□ 2.74
COMMD4-224ENST00000568877 PABPN1Q86U42 306 aaKnown RBP eCLIP32.01■■■□□ 2.71
COMMD4-224ENST00000568877 BICRAQ9NZM4 1560 aa31.98■■■□□ 2.71
COMMD4-224ENST00000568877 SHROOM4Q9ULL8 1493 aa31.78■■■□□ 2.68
COMMD4-224ENST00000568877 EIF4G1Q04637 1599 aaKnown RBP31.12■■■□□ 2.57
COMMD4-224ENST00000568877 CECR2Q9BXF3 1484 aa31.03■■■□□ 2.56
COMMD4-224ENST00000568877 DNAJC5BQ9UF47 199 aa30.99■■■□□ 2.55
COMMD4-224ENST00000568877 BAZ1AQ9NRL2 1556 aaPredicted RBP30.88■■■□□ 2.53
COMMD4-224ENST00000568877 CC2D2AQ9P2K1 1620 aa30.87■■■□□ 2.53
COMMD4-224ENST00000568877 SMARCA4P51532 1647 aa30.84■■■□□ 2.53
COMMD4-224ENST00000568877 MROH2BQ7Z745 1585 aa30.75■■■□□ 2.51
COMMD4-224ENST00000568877 ATAD2BQ9ULI0 1458 aa30.6■■■□□ 2.49
COMMD4-224ENST00000568877 RSF1Q96T23 1441 aaPredicted RBP30.57■■■□□ 2.48
COMMD4-224ENST00000568877 SMARCA2P51531 1590 aa30.57■■■□□ 2.48
COMMD4-224ENST00000568877 PEG3Q9GZU2 1588 aa30.54■■■□□ 2.48
COMMD4-224ENST00000568877 NCAPD3P42695 1498 aa30.53■■■□□ 2.48
COMMD4-224ENST00000568877 WIZO95785 1651 aa30.42■■■□□ 2.46
COMMD4-224ENST00000568877 HMGXB3Q12766 1538 aa30.38■■■□□ 2.45
COMMD4-224ENST00000568877 BAZ1BQ9UIG0 1483 aaKnown RBP30.37■■■□□ 2.45
COMMD4-224ENST00000568877 TOP2AP11388 1531 aaKnown RBP30.12■■■□□ 2.41
COMMD4-224ENST00000568877 SUPT5HO00267 1087 aaKnown RBP30.12■■■□□ 2.41
COMMD4-224ENST00000568877 CCDC88BA6NC98 1476 aa29.8■■■□□ 2.36
COMMD4-224ENST00000568877 CADPSQ9ULU8 1353 aa29.67■■■□□ 2.34
COMMD4-224ENST00000568877 NESP48681 1621 aa29.66■■■□□ 2.34
COMMD4-224ENST00000568877 LAMC3Q9Y6N6 1575 aa29.64■■■□□ 2.33
COMMD4-224ENST00000568877 CFTRP13569 1480 aa29.57■■■□□ 2.32
COMMD4-224ENST00000568877 PDS5BQ9NTI5 1447 aa29.45■■■□□ 2.31
COMMD4-224ENST00000568877 ERCC6Q03468 1493 aa29.4■■■□□ 2.3
COMMD4-224ENST00000568877 FANCD2Q9BXW9 1451 aa29.31■■■□□ 2.28
COMMD4-224ENST00000568877 PRDM2Q13029 1718 aa29.28■■■□□ 2.28
COMMD4-224ENST00000568877 KIF21AQ7Z4S6 1674 aa29.28■■■□□ 2.28
COMMD4-224ENST00000568877 CEP164Q9UPV0 1460 aa29.23■■■□□ 2.27
COMMD4-224ENST00000568877 MRC2Q9UBG0 1479 aa29.1■■■□□ 2.25
COMMD4-224ENST00000568877 THOC2Q8NI27 1593 aaKnown RBP29.09■■■□□ 2.25
COMMD4-224ENST00000568877 URB2Q14146 1524 aaKnown RBP28.99■■■□□ 2.23
COMMD4-224ENST00000568877 WDR62O43379 1518 aa28.99■■■□□ 2.23
COMMD4-224ENST00000568877 CUX2O14529 1486 aa28.92■■■□□ 2.22
COMMD4-224ENST00000568877 ABCC8Q09428 1581 aa28.92■■■□□ 2.22
COMMD4-224ENST00000568877 TOPBP1Q92547 1522 aa28.89■■■□□ 2.21
COMMD4-224ENST00000568877 DNMBPQ6XZF7 1577 aa28.88■■■□□ 2.21
COMMD4-224ENST00000568877 CUX1P39880 1505 aa28.83■■■□□ 2.21
COMMD4-224ENST00000568877 WRNQ14191 1432 aaPredicted RBP eCLIP28.8■■■□□ 2.2
COMMD4-224ENST00000568877 SYNJ1O43426 1573 aa28.68■■■□□ 2.18
COMMD4-224ENST00000568877 POLA1P09884 1462 aaPredicted RBP28.67■■■□□ 2.18
COMMD4-224ENST00000568877 TOP2BQ02880 1626 aa28.67■■■□□ 2.18
COMMD4-224ENST00000568877 FGD5Q6ZNL6 1462 aa28.66■■■□□ 2.18
COMMD4-224ENST00000568877 BIVM-ERCC5R4GMW8 1640 aa28.65■■■□□ 2.18
COMMD4-224ENST00000568877 IFT140Q96RY7 1462 aa28.61■■■□□ 2.17
COMMD4-224ENST00000568877 SOGA1O94964 1423 aa28.58■■■□□ 2.17
COMMD4-224ENST00000568877 RAD54L2Q9Y4B4 1467 aa28.55■■■□□ 2.16
COMMD4-224ENST00000568877 TARBP1Q13395 1621 aaKnown RBP28.52■■■□□ 2.16
COMMD4-224ENST00000568877 ZNF608Q9ULD9 1512 aaPredicted RBP28.44■■■□□ 2.14
COMMD4-224ENST00000568877 TRIM41Q8WV44 630 aa28.44■■■□□ 2.14
COMMD4-224ENST00000568877 ABCA10Q8WWZ4 1543 aa28.4■■■□□ 2.14
COMMD4-224ENST00000568877 TDRD9Q8NDG6 1382 aaKnown RBP28.37■■■□□ 2.13
COMMD4-224ENST00000568877 CHIC1Q5VXU3 224 aa28.36■■■□□ 2.13
COMMD4-224ENST00000568877 WDR97A6NE52 1622 aa28.36■■■□□ 2.13
COMMD4-224ENST00000568877 AQRO60306 1485 aaKnown RBP eCLIP28.35■■■□□ 2.13
COMMD4-224ENST00000568877 EIF4G3O43432 1585 aaKnown RBP28.33■■■□□ 2.12
COMMD4-224ENST00000568877 GAPVD1Q14C86 1478 aa28.25■■■□□ 2.11
COMMD4-224ENST00000568877 ABCA5Q8WWZ7 1642 aa28.22■■■□□ 2.11
COMMD4-224ENST00000568877 GRIN2BQ13224 1484 aa28.19■■■□□ 2.1
COMMD4-224ENST00000568877 KIF27Q86VH2 1401 aa28.18■■■□□ 2.1
COMMD4-224ENST00000568877 PBRM1Q86U86 1689 aa28.1■■■□□ 2.09
COMMD4-224ENST00000568877 SNAPC4Q5SXM2 1469 aa28.08■■■□□ 2.09
COMMD4-224ENST00000568877 ERICH3Q5RHP9 1530 aa28.07■■■□□ 2.08
COMMD4-224ENST00000568877 MAGI1Q96QZ7 1491 aaPredicted RBP28.06■■■□□ 2.08
COMMD4-224ENST00000568877 RUSC2Q8N2Y8 1516 aa28.04■■■□□ 2.08
COMMD4-224ENST00000568877 IGF1RP08069 1367 aa28.02■■■□□ 2.08
COMMD4-224ENST00000568877 SYNJ2O15056 1496 aa27.95■■■□□ 2.07
COMMD4-224ENST00000568877 FBLN2P98095 1184 aa27.95■■■□□ 2.06
COMMD4-224ENST00000568877 FHAD1B1AJZ9 1412 aa27.94■■■□□ 2.06
COMMD4-224ENST00000568877 CHMP7Q8WUX9 453 aaPredicted RBP27.94■■■□□ 2.06
COMMD4-224ENST00000568877 ADAMTS12P58397 1594 aa27.94■■■□□ 2.06
COMMD4-224ENST00000568877 EEA1Q15075 1411 aa27.91■■■□□ 2.06
COMMD4-224ENST00000568877 CUL7Q14999 1698 aa27.87■■■□□ 2.05
COMMD4-224ENST00000568877 CHD1O14646 1710 aa27.87■■■□□ 2.05
COMMD4-224ENST00000568877 CARMIL1Q5VZK9 1371 aa27.86■■■□□ 2.05
COMMD4-224ENST00000568877 OSCARQ8IYS5 282 aa27.85■■■□□ 2.05
COMMD4-224ENST00000568877 FAM9AQ8IZU1 332 aaPredicted RBP27.84■■■□□ 2.05
COMMD4-224ENST00000568877 CSRNP3Q8WYN3 585 aa27.84■■■□□ 2.05
COMMD4-224ENST00000568877 GRIN2AQ12879 1464 aa27.82■■■□□ 2.04
COMMD4-224ENST00000568877 PRXQ9BXM0 1461 aa27.73■■■□□ 2.03
COMMD4-224ENST00000568877 RAPGEF2Q9Y4G8 1499 aa27.73■■■□□ 2.03
COMMD4-224ENST00000568877 NUP160Q12769 1436 aa27.68■■■□□ 2.02
COMMD4-224ENST00000568877 CEP170Q5SW79 1584 aa27.65■■■□□ 2.02
COMMD4-224ENST00000568877 CLASP1Q7Z460 1538 aa27.61■■■□□ 2.01
COMMD4-224ENST00000568877 DNAJC5Q9H3Z4 198 aa27.6■■■□□ 2.01
COMMD4-224ENST00000568877 KIF21BO75037 1637 aa27.56■■■□□ 2
COMMD4-224ENST00000568877 KIAA0586Q9BVV6 1533 aa27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms