RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ZBTB47Q9UFB7 747 aaPredicted RBP5.74□□□□□ -1.49
VPS35-209ENST00000568642 VSIG10Q8N0Z9 540 aa5.73□□□□□ -1.49
VPS35-209ENST00000568642 RIMBP2O15034 1052 aa5.72□□□□□ -1.49
VPS35-209ENST00000568642 HAP1P54257 671 aaPredicted RBP5.72□□□□□ -1.49
VPS35-209ENST00000568642 LSM11P83369 360 aaKnown RBP eCLIP5.72□□□□□ -1.49
VPS35-209ENST00000568642 DCAF8Q5TAQ9 597 aa5.72□□□□□ -1.49
VPS35-209ENST00000568642 GPR153Q6NV75 609 aa5.72□□□□□ -1.49
VPS35-209ENST00000568642 HCSTQ9UBK5 93 aa5.7□□□□□ -1.5
VPS35-209ENST00000568642 ZSWIM6Q9HCJ5 1215 aa5.69□□□□□ -1.5
VPS35-209ENST00000568642 G3V3G9 751 aa5.68□□□□□ -1.5
VPS35-209ENST00000568642 PSEN1P49768 467 aa5.68□□□□□ -1.5
VPS35-209ENST00000568642 TMEM92Q6UXU6 159 aa5.68□□□□□ -1.5
VPS35-209ENST00000568642 IRX2Q9BZI1 471 aaPredicted RBP5.68□□□□□ -1.5
VPS35-209ENST00000568642 GTF3C3Q9Y5Q9 886 aa5.68□□□□□ -1.5
VPS35-209ENST00000568642 LMTK3Q96Q04 1460 aa5.67□□□□□ -1.5
VPS35-209ENST00000568642 POTEEQ6S8J3 1075 aa5.66□□□□□ -1.5
VPS35-209ENST00000568642 ZNF467Q7Z7K2 595 aaPredicted RBP5.66□□□□□ -1.5
VPS35-209ENST00000568642 CCDC180Q9P1Z9 1646 aa5.66□□□□□ -1.5
VPS35-209ENST00000568642 SOCS7O14512 581 aa5.65□□□□□ -1.5
VPS35-209ENST00000568642 ARSIQ5FYB1 569 aa5.65□□□□□ -1.5
VPS35-209ENST00000568642 KHSRPQ92945 711 aaKnown RBP eCLIP5.65□□□□□ -1.5
VPS35-209ENST00000568642 ZNF316A6NFI3 1004 aaPredicted RBP5.64□□□□□ -1.51
VPS35-209ENST00000568642 HOMEZQ8IX15 550 aa5.64□□□□□ -1.51
VPS35-209ENST00000568642 CABP2Q9NPB3 220 aa5.63□□□□□ -1.51
VPS35-209ENST00000568642 ERCC6Q03468 1493 aa5.63□□□□□ -1.51
VPS35-209ENST00000568642 AXIN2Q9Y2T1 843 aa5.62□□□□□ -1.51
VPS35-209ENST00000568642 BICRAQ9NZM4 1560 aa5.61□□□□□ -1.51
VPS35-209ENST00000568642 TMEM132AQ24JP5 1023 aa5.6□□□□□ -1.51
VPS35-209ENST00000568642 RGS20O76081 388 aa5.57□□□□□ -1.52
VPS35-209ENST00000568642 ADGRD1Q6QNK2 874 aa5.57□□□□□ -1.52
VPS35-209ENST00000568642 MICALL2Q8IY33 904 aa5.57□□□□□ -1.52
VPS35-209ENST00000568642 PBX2P40425 430 aa5.56□□□□□ -1.52
VPS35-209ENST00000568642 PDAP1Q13442 181 aaKnown RBP5.56□□□□□ -1.52
VPS35-209ENST00000568642 EIF4G1Q04637 1599 aaKnown RBP5.55□□□□□ -1.52
VPS35-209ENST00000568642 CHRM1P11229 460 aaPredicted RBP5.55□□□□□ -1.52
VPS35-209ENST00000568642 RIMBP3CA6NJZ7 1639 aa5.55□□□□□ -1.52
VPS35-209ENST00000568642 RIMBP3BA6NNM3 1639 aa5.55□□□□□ -1.52
VPS35-209ENST00000568642 RIMBP3Q9UFD9 1639 aa5.55□□□□□ -1.52
VPS35-209ENST00000568642 PKD2Q13563 968 aa5.54□□□□□ -1.52
VPS35-209ENST00000568642 KCTD12Q96CX2 325 aaKnown RBP5.54□□□□□ -1.52
VPS35-209ENST00000568642 Q6ZNB5 142 aa5.53□□□□□ -1.52
VPS35-209ENST00000568642 KLHL34Q8N239 644 aa5.53□□□□□ -1.52
VPS35-209ENST00000568642 NUDT7P0C024 238 aa5.52□□□□□ -1.53
VPS35-209ENST00000568642 ILDR2Q71H61 639 aa5.52□□□□□ -1.53
VPS35-209ENST00000568642 A0A0G2JS52 829 aa5.51□□□□□ -1.53
VPS35-209ENST00000568642 LCE2BO14633 110 aa5.51□□□□□ -1.53
VPS35-209ENST00000568642 HRO43593 1189 aa5.51□□□□□ -1.53
VPS35-209ENST00000568642 GSE1Q14687 1217 aa5.51□□□□□ -1.53
VPS35-209ENST00000568642 LHX6Q9UPM6 363 aa5.51□□□□□ -1.53
VPS35-209ENST00000568642 NACADO15069 1562 aa5.5□□□□□ -1.53
VPS35-209ENST00000568642 IFFO2Q5TF58 517 aa5.49□□□□□ -1.53
VPS35-209ENST00000568642 EFCAB3Q8N7B9 438 aa5.49□□□□□ -1.53
VPS35-209ENST00000568642 FBXO41Q8TF61 875 aa5.49□□□□□ -1.53
VPS35-209ENST00000568642 BAZ1AQ9NRL2 1556 aaPredicted RBP5.48□□□□□ -1.53
VPS35-209ENST00000568642 DMRTA1Q5VZB9 504 aa5.48□□□□□ -1.53
VPS35-209ENST00000568642 ERICH6Q7L0X2 663 aa5.48□□□□□ -1.53
VPS35-209ENST00000568642 PODXL2Q9NZ53 605 aa5.48□□□□□ -1.53
VPS35-209ENST00000568642 ARHGAP33O14559 1287 aa5.47□□□□□ -1.53
VPS35-209ENST00000568642 TSHZ2Q9NRE2 1034 aa5.47□□□□□ -1.53
VPS35-209ENST00000568642 PTPN5P54829 565 aa5.46□□□□□ -1.54
VPS35-209ENST00000568642 MS4A4AQ96JQ5 239 aa5.46□□□□□ -1.54
VPS35-209ENST00000568642 ERCC6L2Q5T890 1561 aa5.46□□□□□ -1.54
VPS35-209ENST00000568642 TK2O00142 265 aa5.44□□□□□ -1.54
VPS35-209ENST00000568642 PSEN2P49810 448 aa5.44□□□□□ -1.54
VPS35-209ENST00000568642 DISP3Q9P2K9 1392 aa5.43□□□□□ -1.54
VPS35-209ENST00000568642 THOC2Q8NI27 1593 aaKnown RBP5.43□□□□□ -1.54
VPS35-209ENST00000568642 HRCP23327 699 aa5.43□□□□□ -1.54
VPS35-209ENST00000568642 IFNLR1Q8IU57 520 aaPredicted RBP5.43□□□□□ -1.54
VPS35-209ENST00000568642 BBXQ8WY36 941 aaPredicted RBP5.43□□□□□ -1.54
VPS35-209ENST00000568642 SHROOM4Q9ULL8 1493 aa5.42□□□□□ -1.54
VPS35-209ENST00000568642 C14orf37Q86TY3 774 aa5.41□□□□□ -1.54
VPS35-209ENST00000568642 PCDHGA4Q9Y5G9 962 aa5.41□□□□□ -1.54
VPS35-209ENST00000568642 ARHGEF11O15085 1522 aa5.41□□□□□ -1.54
VPS35-209ENST00000568642 TRIM26Q12899 539 aaPredicted RBP5.4□□□□□ -1.54
VPS35-209ENST00000568642 PAXIP1Q6ZW49 1069 aaPredicted RBP5.4□□□□□ -1.54
VPS35-209ENST00000568642 CYB5RLQ6IPT4 315 aa5.38□□□□□ -1.55
VPS35-209ENST00000568642 PHF8Q9UPP1 1060 aa5.38□□□□□ -1.55
VPS35-209ENST00000568642 KIF3CO14782 793 aa5.37□□□□□ -1.55
VPS35-209ENST00000568642 UBTFP17480 764 aaKnown RBP5.37□□□□□ -1.55
VPS35-209ENST00000568642 TRAF7Q6Q0C0 670 aa5.37□□□□□ -1.55
VPS35-209ENST00000568642 STAC3Q96MF2 364 aa5.37□□□□□ -1.55
VPS35-209ENST00000568642 C2orf72A6NCS6 295 aa5.36□□□□□ -1.55
VPS35-209ENST00000568642 SUPT5HO00267 1087 aaKnown RBP5.36□□□□□ -1.55
VPS35-209ENST00000568642 THSD4Q6ZMP0 1018 aa5.36□□□□□ -1.55
VPS35-209ENST00000568642 HECW2Q9P2P5 1572 aa5.35□□□□□ -1.55
VPS35-209ENST00000568642 SLC34A2O95436 690 aa5.35□□□□□ -1.55
VPS35-209ENST00000568642 VASPP50552 380 aaPredicted RBP5.35□□□□□ -1.55
VPS35-209ENST00000568642 SPATA31D1Q6ZQQ2 1576 aa5.34□□□□□ -1.55
VPS35-209ENST00000568642 KDM4FA0A1W2PPD8 638 aa5.34□□□□□ -1.55
VPS35-209ENST00000568642 SOX12O15370 315 aa5.34□□□□□ -1.55
VPS35-209ENST00000568642 DCAF8L2P0C7V8 631 aa5.34□□□□□ -1.55
VPS35-209ENST00000568642 RANGAP1P46060 587 aaPredicted RBP5.34□□□□□ -1.55
VPS35-209ENST00000568642 CFAP44Q96MT7 982 aa5.34□□□□□ -1.55
VPS35-209ENST00000568642 PSDA5PKW4 1024 aaPredicted RBP5.33□□□□□ -1.56
VPS35-209ENST00000568642 ZNF775Q96BV0 537 aaPredicted RBP5.33□□□□□ -1.56
VPS35-209ENST00000568642 VPS9D1Q9Y2B5 631 aa5.33□□□□□ -1.56
VPS35-209ENST00000568642 NPM2Q86SE8 214 aaKnown RBP5.32□□□□□ -1.56
VPS35-209ENST00000568642 CIZ1Q9ULV3 898 aaPredicted RBP5.32□□□□□ -1.56
VPS35-209ENST00000568642 GFRA3O60609 400 aa5.31□□□□□ -1.56
VPS35-209ENST00000568642 KCNK17Q96T54 332 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms