RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 SLC4A2P04920 1241 aa11.72□□□□□ -0.53
SCFD1-222ENST00000556768 CDK13Q14004 1512 aaKnown RBP11.72□□□□□ -0.53
SCFD1-222ENST00000556768 FANCAO15360 1455 aa11.72□□□□□ -0.53
SCFD1-222ENST00000556768 AKNAQ7Z591 1439 aa11.72□□□□□ -0.53
SCFD1-222ENST00000556768 HECW1Q76N89 1606 aa11.71□□□□□ -0.53
SCFD1-222ENST00000556768 DENND4BO75064 1496 aaPredicted RBP11.7□□□□□ -0.54
SCFD1-222ENST00000556768 ADGRL1O94910 1474 aa11.7□□□□□ -0.54
SCFD1-222ENST00000556768 PLCH2O75038 1416 aa11.7□□□□□ -0.54
SCFD1-222ENST00000556768 CASKIN1Q8WXD9 1431 aa11.7□□□□□ -0.54
SCFD1-222ENST00000556768 FKBP8Q14318 412 aa11.7□□□□□ -0.54
SCFD1-222ENST00000556768 TROQ12816 1431 aaPredicted RBP11.69□□□□□ -0.54
SCFD1-222ENST00000556768 ATXN8OSP0DMR3 200 aa11.69□□□□□ -0.54
SCFD1-222ENST00000556768 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.69□□□□□ -0.54
SCFD1-222ENST00000556768 MYT1LQ9UL68 1186 aa11.68□□□□□ -0.54
SCFD1-222ENST00000556768 CCDC18Q5T9S5 1454 aa11.68□□□□□ -0.54
SCFD1-222ENST00000556768 SCAPERQ9BY12 1400 aa11.66□□□□□ -0.54
SCFD1-222ENST00000556768 HOXD11P31277 338 aaPredicted RBP11.66□□□□□ -0.54
SCFD1-222ENST00000556768 FYCO1Q9BQS8 1478 aa11.64□□□□□ -0.55
SCFD1-222ENST00000556768 CFAP74Q9C0B2 1584 aa11.64□□□□□ -0.55
SCFD1-222ENST00000556768 LOC105371045A0A1W2PR82 267 aa11.63□□□□□ -0.55
SCFD1-222ENST00000556768 TTC37Q6PGP7 1564 aa11.62□□□□□ -0.55
SCFD1-222ENST00000556768 MTUS2Q5JR59 1369 aa11.62□□□□□ -0.55
SCFD1-222ENST00000556768 KIF14Q15058 1648 aa11.62□□□□□ -0.55
SCFD1-222ENST00000556768 POGZQ7Z3K3 1410 aa11.62□□□□□ -0.55
SCFD1-222ENST00000556768 MAGI2Q86UL8 1455 aa11.62□□□□□ -0.55
SCFD1-222ENST00000556768 AFAP1Q8N556 730 aa11.62□□□□□ -0.55
SCFD1-222ENST00000556768 ZNF777Q9ULD5 760 aaPredicted RBP11.62□□□□□ -0.55
SCFD1-222ENST00000556768 CEP162Q5TB80 1403 aa11.61□□□□□ -0.55
SCFD1-222ENST00000556768 ARHGAP5Q13017 1502 aa11.61□□□□□ -0.55
SCFD1-222ENST00000556768 MYCNP04198 464 aaPredicted RBP11.6□□□□□ -0.55
SCFD1-222ENST00000556768 CFDP1Q9UEE9 299 aaPredicted RBP11.6□□□□□ -0.55
SCFD1-222ENST00000556768 PCF11O94913 1555 aaKnown RBP11.59□□□□□ -0.55
SCFD1-222ENST00000556768 MLECQ14165 292 aa11.58□□□□□ -0.56
SCFD1-222ENST00000556768 ZNF518AQ6AHZ1 1483 aa11.58□□□□□ -0.56
SCFD1-222ENST00000556768 CCNB3Q8WWL7 1395 aa11.58□□□□□ -0.56
SCFD1-222ENST00000556768 DMRT2Q9Y5R5 561 aa11.58□□□□□ -0.56
SCFD1-222ENST00000556768 ESF1Q9H501 851 aaKnown RBP11.56□□□□□ -0.56
SCFD1-222ENST00000556768 ZFYVE16Q7Z3T8 1539 aa11.56□□□□□ -0.56
SCFD1-222ENST00000556768 YEATS2Q9ULM3 1422 aa11.56□□□□□ -0.56
SCFD1-222ENST00000556768 FRMPD1Q5SYB0 1578 aa11.55□□□□□ -0.56
SCFD1-222ENST00000556768 APLP2Q06481 763 aa11.55□□□□□ -0.56
SCFD1-222ENST00000556768 ZMYM4Q5VZL5 1548 aa11.55□□□□□ -0.56
SCFD1-222ENST00000556768 ATP10AO60312 1499 aa11.55□□□□□ -0.56
SCFD1-222ENST00000556768 ARHGEF40Q8TER5 1519 aa11.54□□□□□ -0.56
SCFD1-222ENST00000556768 MYO5CQ9NQX4 1742 aa11.54□□□□□ -0.56
SCFD1-222ENST00000556768 PTPRMP28827 1452 aa11.53□□□□□ -0.56
SCFD1-222ENST00000556768 HNRNPMP52272 730 aaKnown RBP eCLIP11.53□□□□□ -0.562e-6■■■■□ 19.7
SCFD1-222ENST00000556768 SPAG9O60271 1321 aaKnown RBP11.53□□□□□ -0.56
SCFD1-222ENST00000556768 C9orf84Q5VXU9 1444 aa11.53□□□□□ -0.56
SCFD1-222ENST00000556768 GPATCH8Q9UKJ3 1502 aaKnown RBP11.52□□□□□ -0.57
SCFD1-222ENST00000556768 RICTORQ6R327 1708 aa11.52□□□□□ -0.57
SCFD1-222ENST00000556768 PLEKHH2Q8IVE3 1493 aa11.5□□□□□ -0.57
SCFD1-222ENST00000556768 TRAPPC8Q9Y2L5 1435 aa11.5□□□□□ -0.57
SCFD1-222ENST00000556768 MLH3Q9UHC1 1453 aa11.5□□□□□ -0.57
SCFD1-222ENST00000556768 KIAA1107Q9UPP5 1409 aa11.5□□□□□ -0.57
SCFD1-222ENST00000556768 RSPH4AQ5TD94 716 aa11.49□□□□□ -0.57
SCFD1-222ENST00000556768 VPS8Q8N3P4 1428 aa11.49□□□□□ -0.57
SCFD1-222ENST00000556768 LRRIQ1Q96JM4 1722 aa11.47□□□□□ -0.57
SCFD1-222ENST00000556768 PREX2Q70Z35 1606 aa11.47□□□□□ -0.57
SCFD1-222ENST00000556768 ARHGEF12Q9NZN5 1544 aa11.47□□□□□ -0.57
SCFD1-222ENST00000556768 ADAMTSL3P82987 1691 aa11.47□□□□□ -0.57
SCFD1-222ENST00000556768 TSPY4P0CV99 314 aa11.46□□□□□ -0.57
SCFD1-222ENST00000556768 TSPY10P0CW01 314 aa11.46□□□□□ -0.57
SCFD1-222ENST00000556768 KDM5CP41229 1560 aa11.46□□□□□ -0.57
SCFD1-222ENST00000556768 BCORL1Q5H9F3 1711 aa11.46□□□□□ -0.57
SCFD1-222ENST00000556768 ABCC1P33527 1531 aa11.46□□□□□ -0.57
SCFD1-222ENST00000556768 EHBP1L1Q8N3D4 1523 aa11.46□□□□□ -0.57
SCFD1-222ENST00000556768 ZNF644Q9H582 1327 aaPredicted RBP11.46□□□□□ -0.58
SCFD1-222ENST00000556768 HECW2Q9P2P5 1572 aa11.45□□□□□ -0.58
SCFD1-222ENST00000556768 CDC42BPBQ9Y5S2 1711 aa11.44□□□□□ -0.58
SCFD1-222ENST00000556768 MADDQ8WXG6 1647 aa11.44□□□□□ -0.58
SCFD1-222ENST00000556768 CEBPAP49715 358 aaPredicted RBP11.44□□□□□ -0.58
SCFD1-222ENST00000556768 NCOA2Q15596 1464 aa11.43□□□□□ -0.58
SCFD1-222ENST00000556768 SYCP2Q9BX26 1530 aa11.43□□□□□ -0.58
SCFD1-222ENST00000556768 GGT6Q6P531 493 aa11.42□□□□□ -0.58
SCFD1-222ENST00000556768 KANK4Q5T7N3 995 aaPredicted RBP11.42□□□□□ -0.58
SCFD1-222ENST00000556768 HSPA2P54652 639 aa11.41□□□□□ -0.58
SCFD1-222ENST00000556768 LRRC9Q6ZRR7 1453 aa11.41□□□□□ -0.58
SCFD1-222ENST00000556768 CDC42BPAQ5VT25 1732 aa11.41□□□□□ -0.58
SCFD1-222ENST00000556768 SAMD9LQ8IVG5 1584 aa11.4□□□□□ -0.58
SCFD1-222ENST00000556768 CNTLNQ9NXG0 1405 aa11.4□□□□□ -0.58
SCFD1-222ENST00000556768 DIP2CQ9Y2E4 1556 aa11.4□□□□□ -0.59
SCFD1-222ENST00000556768 AGLP35573 1532 aa11.4□□□□□ -0.59
SCFD1-222ENST00000556768 REREQ9P2R6 1566 aa11.39□□□□□ -0.59
SCFD1-222ENST00000556768 RTEL1-TNFRSF6BF6WH68 1400 aa11.39□□□□□ -0.59
SCFD1-222ENST00000556768 TIAM1Q13009 1591 aa11.38□□□□□ -0.59
SCFD1-222ENST00000556768 MAP3K1Q13233 1512 aa11.38□□□□□ -0.59
SCFD1-222ENST00000556768 RIMS1Q86UR5 1692 aaKnown RBP11.38□□□□□ -0.59
SCFD1-222ENST00000556768 A2MP01023 1474 aa11.38□□□□□ -0.59
SCFD1-222ENST00000556768 MBD5Q9P267 1494 aa11.38□□□□□ -0.59
SCFD1-222ENST00000556768 ITSN2Q9NZM3 1697 aa11.38□□□□□ -0.59
SCFD1-222ENST00000556768 ATP7AQ04656 1500 aa11.37□□□□□ -0.59
SCFD1-222ENST00000556768 LMTK3Q96Q04 1460 aa11.37□□□□□ -0.59
SCFD1-222ENST00000556768 KIF3BO15066 747 aa11.37□□□□□ -0.59
SCFD1-222ENST00000556768 SUPT6HQ7KZ85 1726 aaKnown RBP11.37□□□□□ -0.59
SCFD1-222ENST00000556768 DHX29Q7Z478 1369 aaKnown RBP11.36□□□□□ -0.59
SCFD1-222ENST00000556768 CCDC141Q6ZP82 1450 aa11.36□□□□□ -0.59
SCFD1-222ENST00000556768 UHRF1BP1Q6BDS2 1440 aa11.36□□□□□ -0.59
SCFD1-222ENST00000556768 ABCA6Q8N139 1617 aa11.36□□□□□ -0.59
SCFD1-222ENST00000556768 ZMYM3Q14202 1370 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms