RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 GLI2P10070 1586 aa16.54■□□□□ 0.24
TDP1-211ENST00000555178 PTPN23Q9H3S7 1636 aa16.53■□□□□ 0.24
TDP1-211ENST00000555178 ZNF777Q9ULD5 760 aaPredicted RBP16.53■□□□□ 0.24
TDP1-211ENST00000555178 PLCH2O75038 1416 aa16.52■□□□□ 0.24
TDP1-211ENST00000555178 CD109Q6YHK3 1445 aa16.52■□□□□ 0.24
TDP1-211ENST00000555178 SAMD9LQ8IVG5 1584 aa16.52■□□□□ 0.23
TDP1-211ENST00000555178 RRBP1Q9P2E9 1410 aaKnown RBP16.51■□□□□ 0.23
TDP1-211ENST00000555178 ARHGAP5Q13017 1502 aa16.51■□□□□ 0.23
TDP1-211ENST00000555178 CFDP1Q9UEE9 299 aaPredicted RBP16.5■□□□□ 0.23
TDP1-211ENST00000555178 FAM50AQ14320 339 aaKnown RBP16.49■□□□□ 0.23
TDP1-211ENST00000555178 CAMSAP2Q08AD1 1489 aa16.48■□□□□ 0.23
TDP1-211ENST00000555178 ARHGEF12Q9NZN5 1544 aa16.48■□□□□ 0.23
TDP1-211ENST00000555178 TRHP20396 242 aaPredicted RBP16.47■□□□□ 0.23
TDP1-211ENST00000555178 FANCAO15360 1455 aa16.46■□□□□ 0.23
TDP1-211ENST00000555178 TCOF1Q13428 1488 aaKnown RBP16.46■□□□□ 0.23
TDP1-211ENST00000555178 MIA2Q96PC5 1412 aa16.46■□□□□ 0.23
TDP1-211ENST00000555178 ITGAEP38570 1179 aa16.46■□□□□ 0.23
TDP1-211ENST00000555178 HNRNPMP52272 730 aaKnown RBP eCLIP16.45■□□□□ 0.22
TDP1-211ENST00000555178 PTPRKQ15262 1439 aa16.44■□□□□ 0.22
TDP1-211ENST00000555178 SYCP2Q9BX26 1530 aa16.43■□□□□ 0.22
TDP1-211ENST00000555178 ARAP3Q8WWN8 1544 aa16.43■□□□□ 0.22
TDP1-211ENST00000555178 EFCAB2Q5VUJ9 269 aa16.42■□□□□ 0.22
TDP1-211ENST00000555178 ABCC1P33527 1531 aa16.41■□□□□ 0.22
TDP1-211ENST00000555178 MBD5Q9P267 1494 aa16.41■□□□□ 0.22
TDP1-211ENST00000555178 AKNAQ7Z591 1439 aa16.4■□□□□ 0.22
TDP1-211ENST00000555178 TRAPPC8Q9Y2L5 1435 aa16.4■□□□□ 0.22
TDP1-211ENST00000555178 DNMT1P26358 1616 aaKnown RBP16.39■□□□□ 0.21
TDP1-211ENST00000555178 ABCC5O15440 1437 aa16.38■□□□□ 0.21
TDP1-211ENST00000555178 ADGRL1O94910 1474 aa16.38■□□□□ 0.21
TDP1-211ENST00000555178 COL17A1Q9UMD9 1497 aaPredicted RBP16.38■□□□□ 0.21
TDP1-211ENST00000555178 CROCC2H7BZ55 1655 aa16.37■□□□□ 0.21
TDP1-211ENST00000555178 CHIC2Q9UKJ5 165 aa16.37■□□□□ 0.21
TDP1-211ENST00000555178 AFAP1Q8N556 730 aa16.37■□□□□ 0.21
TDP1-211ENST00000555178 SCAPERQ9BY12 1400 aa16.37■□□□□ 0.21
TDP1-211ENST00000555178 DAPK1P53355 1430 aa16.36■□□□□ 0.21
TDP1-211ENST00000555178 CFAP74Q9C0B2 1584 aa16.36■□□□□ 0.21
TDP1-211ENST00000555178 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.35■□□□□ 0.21
TDP1-211ENST00000555178 NEO1Q92859 1461 aa16.35■□□□□ 0.21
TDP1-211ENST00000555178 RAPGEF3O95398 923 aa16.34■□□□□ 0.21
TDP1-211ENST00000555178 ARHGEF5Q12774 1597 aa16.34■□□□□ 0.21
TDP1-211ENST00000555178 RICTORQ6R327 1708 aa16.34■□□□□ 0.21
TDP1-211ENST00000555178 FRMPD1Q5SYB0 1578 aa16.33■□□□□ 0.21
TDP1-211ENST00000555178 KIAA1107Q9UPP5 1409 aa16.32■□□□□ 0.2
TDP1-211ENST00000555178 TEX14Q8IWB6 1497 aa16.31■□□□□ 0.2
TDP1-211ENST00000555178 CCDC141Q6ZP82 1450 aa16.31■□□□□ 0.2
TDP1-211ENST00000555178 PLEKHH2Q8IVE3 1493 aa16.3■□□□□ 0.2
TDP1-211ENST00000555178 RRP7BPQ9NSQ0 103 aa16.29■□□□□ 0.2
TDP1-211ENST00000555178 POGZQ7Z3K3 1410 aa16.28■□□□□ 0.2
TDP1-211ENST00000555178 KDM6BO15054 1643 aa16.28■□□□□ 0.2
TDP1-211ENST00000555178 KIDINS220Q9ULH0 1771 aa16.28■□□□□ 0.2
TDP1-211ENST00000555178 ADGBQ8N7X0 1667 aa16.27■□□□□ 0.2
TDP1-211ENST00000555178 C9orf84Q5VXU9 1444 aa16.27■□□□□ 0.2
TDP1-211ENST00000555178 DENND4BO75064 1496 aaPredicted RBP16.27■□□□□ 0.2
TDP1-211ENST00000555178 KDM5CP41229 1560 aa16.26■□□□□ 0.19
TDP1-211ENST00000555178 INO80Q9ULG1 1556 aaPredicted RBP16.25■□□□□ 0.19
TDP1-211ENST00000555178 ZFYVE16Q7Z3T8 1539 aa16.25■□□□□ 0.19
TDP1-211ENST00000555178 MAST1Q9Y2H9 1570 aa16.24■□□□□ 0.19
TDP1-211ENST00000555178 ZNF518AQ6AHZ1 1483 aa16.24■□□□□ 0.19
TDP1-211ENST00000555178 SHANK2Q9UPX8 1470 aa16.23■□□□□ 0.19
TDP1-211ENST00000555178 SPAG9O60271 1321 aaKnown RBP16.23■□□□□ 0.19
TDP1-211ENST00000555178 NCOA1Q15788 1441 aa16.23■□□□□ 0.19
TDP1-211ENST00000555178 ATP7AQ04656 1500 aa16.23■□□□□ 0.19
TDP1-211ENST00000555178 TSPY4P0CV99 314 aa16.22■□□□□ 0.19
TDP1-211ENST00000555178 TSPY10P0CW01 314 aa16.22■□□□□ 0.19
TDP1-211ENST00000555178 YEATS2Q9ULM3 1422 aa16.22■□□□□ 0.19
TDP1-211ENST00000555178 ABCA6Q8N139 1617 aa16.22■□□□□ 0.19
TDP1-211ENST00000555178 HECW2Q9P2P5 1572 aa16.21■□□□□ 0.19
TDP1-211ENST00000555178 ADGRL2O95490 1459 aa16.21■□□□□ 0.19
TDP1-211ENST00000555178 NAIPQ13075 1403 aa16.21■□□□□ 0.19
TDP1-211ENST00000555178 GCC2Q8IWJ2 1684 aa16.21■□□□□ 0.19
TDP1-211ENST00000555178 SIGLEC1Q9BZZ2 1709 aa16.2■□□□□ 0.18
TDP1-211ENST00000555178 RSPH4AQ5TD94 716 aa16.2■□□□□ 0.18
TDP1-211ENST00000555178 MYT1LQ9UL68 1186 aa16.19■□□□□ 0.18
TDP1-211ENST00000555178 PLXNC1O60486 1568 aa16.18■□□□□ 0.18
TDP1-211ENST00000555178 ZMYM4Q5VZL5 1548 aa16.18■□□□□ 0.18
TDP1-211ENST00000555178 MLH3Q9UHC1 1453 aa16.18■□□□□ 0.18
TDP1-211ENST00000555178 HFM1A2PYH4 1435 aa16.17■□□□□ 0.18
TDP1-211ENST00000555178 DIP2CQ9Y2E4 1556 aa16.17■□□□□ 0.18
TDP1-211ENST00000555178 ROCK1Q13464 1354 aa16.17■□□□□ 0.18
TDP1-211ENST00000555178 KIF15Q9NS87 1388 aa16.17■□□□□ 0.18
TDP1-211ENST00000555178 ANKRD30AQ9BXX3 1397 aa16.16■□□□□ 0.18
TDP1-211ENST00000555178 RAB3GAP2Q9H2M9 1393 aa16.16■□□□□ 0.18
TDP1-211ENST00000555178 RTEL1-TNFRSF6BF6WH68 1400 aa16.16■□□□□ 0.18
TDP1-211ENST00000555178 SETD5Q9C0A6 1442 aa16.15■□□□□ 0.18
TDP1-211ENST00000555178 ANKRD50Q9ULJ7 1429 aa16.1■□□□□ 0.17
TDP1-211ENST00000555178 DUOX2Q9NRD8 1548 aa16.1■□□□□ 0.17
TDP1-211ENST00000555178 ARHGEF40Q8TER5 1519 aa16.09■□□□□ 0.17
TDP1-211ENST00000555178 A2MP01023 1474 aa16.09■□□□□ 0.17
TDP1-211ENST00000555178 DHX29Q7Z478 1369 aaKnown RBP16.07■□□□□ 0.16
TDP1-211ENST00000555178 MAGI2Q86UL8 1455 aa16.07■□□□□ 0.16
TDP1-211ENST00000555178 ATP10AO60312 1499 aa16.06■□□□□ 0.16
TDP1-211ENST00000555178 MROH1Q8NDA8 1641 aa16.05■□□□□ 0.16
TDP1-211ENST00000555178 KIF3BO15066 747 aa16.04■□□□□ 0.16
TDP1-211ENST00000555178 ERBINQ96RT1 1412 aa16.03■□□□□ 0.16
TDP1-211ENST00000555178 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.03■□□□□ 0.16
TDP1-211ENST00000555178 UNC13BO14795 1591 aa16.02■□□□□ 0.15
TDP1-211ENST00000555178 DEPDC5O75140 1603 aa16.02■□□□□ 0.15
TDP1-211ENST00000555178 EIF2AK4Q9P2K8 1649 aaKnown RBP16.02■□□□□ 0.15
TDP1-211ENST00000555178 TRIM52Q96A61 297 aa16.01■□□□□ 0.15
TDP1-211ENST00000555178 BCORL1Q5H9F3 1711 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms