RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 MYT1LQ9UL68 1186 aa18.78■□□□□ 0.6
PRPF40B-209ENST00000548825 SUPT6HQ7KZ85 1726 aaKnown RBP18.78■□□□□ 0.6
PRPF40B-209ENST00000548825 TSPY4P0CV99 314 aa18.77■□□□□ 0.6
PRPF40B-209ENST00000548825 TSPY10P0CW01 314 aa18.77■□□□□ 0.6
PRPF40B-209ENST00000548825 EHBP1L1Q8N3D4 1523 aa18.77■□□□□ 0.59
PRPF40B-209ENST00000548825 B4GALNT3Q6L9W6 998 aa18.76■□□□□ 0.59
PRPF40B-209ENST00000548825 DCAF11Q8TEB1 546 aa18.74■□□□□ 0.59
PRPF40B-209ENST00000548825 IQGAP2Q13576 1575 aa18.74■□□□□ 0.59
PRPF40B-209ENST00000548825 PRKRIP1Q9H875 184 aaPredicted RBP18.74■□□□□ 0.59
PRPF40B-209ENST00000548825 KDM6BO15054 1643 aa18.74■□□□□ 0.59
PRPF40B-209ENST00000548825 ABCA5Q8WWZ7 1642 aa18.73■□□□□ 0.59
PRPF40B-209ENST00000548825 CARD11Q9BXL7 1154 aa18.73■□□□□ 0.59
PRPF40B-209ENST00000548825 RBM19Q9Y4C8 960 aaKnown RBP18.73■□□□□ 0.59
PRPF40B-209ENST00000548825 PLB1Q6P1J6 1458 aa18.73■□□□□ 0.59
PRPF40B-209ENST00000548825 KIF7Q2M1P5 1343 aa18.71■□□□□ 0.59
PRPF40B-209ENST00000548825 MRC2Q9UBG0 1479 aa18.7■□□□□ 0.58
PRPF40B-209ENST00000548825 UGGT2Q9NYU1 1516 aa18.7■□□□□ 0.58
PRPF40B-209ENST00000548825 NUP155O75694 1391 aa18.7■□□□□ 0.58
PRPF40B-209ENST00000548825 LRRIQ1Q96JM4 1722 aa18.69■□□□□ 0.58
PRPF40B-209ENST00000548825 SAMD9Q5K651 1589 aa18.68■□□□□ 0.58
PRPF40B-209ENST00000548825 DAPK1P53355 1430 aa18.67■□□□□ 0.58
PRPF40B-209ENST00000548825 ABCC5O15440 1437 aa18.67■□□□□ 0.58
PRPF40B-209ENST00000548825 ERICH6Q7L0X2 663 aa18.67■□□□□ 0.58
PRPF40B-209ENST00000548825 TMC1Q8TDI8 760 aa18.67■□□□□ 0.58
PRPF40B-209ENST00000548825 CCDC7Q96M83 1385 aa18.66■□□□□ 0.58
PRPF40B-209ENST00000548825 HECW1Q76N89 1606 aa18.65■□□□□ 0.58
PRPF40B-209ENST00000548825 SENP3Q9H4L4 574 aaPredicted RBP18.64■□□□□ 0.57
PRPF40B-209ENST00000548825 TARBP1Q13395 1621 aaKnown RBP18.63■□□□□ 0.57
PRPF40B-209ENST00000548825 ST20-MTHFSA0A0A6YYL1 179 aa18.62■□□□□ 0.57
PRPF40B-209ENST00000548825 ANKRD30BQ9BXX2 1392 aa18.62■□□□□ 0.57
PRPF40B-209ENST00000548825 NUP153P49790 1475 aaKnown RBP18.61■□□□□ 0.57
PRPF40B-209ENST00000548825 DENND4BO75064 1496 aaPredicted RBP18.6■□□□□ 0.57
PRPF40B-209ENST00000548825 MIA2Q96PC5 1412 aa18.59■□□□□ 0.57
PRPF40B-209ENST00000548825 USP47Q96K76 1375 aa18.58■□□□□ 0.57
PRPF40B-209ENST00000548825 KIAA0586Q9BVV6 1533 aa18.58■□□□□ 0.56
PRPF40B-209ENST00000548825 CNTLNQ9NXG0 1405 aa18.58■□□□□ 0.56
PRPF40B-209ENST00000548825 ANKRD30AQ9BXX3 1397 aa18.57■□□□□ 0.56
PRPF40B-209ENST00000548825 IFT140Q96RY7 1462 aa18.57■□□□□ 0.56
PRPF40B-209ENST00000548825 CC2D1BQ5T0F9 858 aaKnown RBP18.56■□□□□ 0.56
PRPF40B-209ENST00000548825 GRIN2AQ12879 1464 aa18.56■□□□□ 0.56
PRPF40B-209ENST00000548825 ADAMTS12P58397 1594 aa18.56■□□□□ 0.56
PRPF40B-209ENST00000548825 CARMIL2Q6F5E8 1435 aa18.56■□□□□ 0.56
PRPF40B-209ENST00000548825 WDR62O43379 1518 aa18.55■□□□□ 0.56
PRPF40B-209ENST00000548825 DISP1Q96F81 1524 aa18.55■□□□□ 0.56
PRPF40B-209ENST00000548825 ANP32EQ9BTT0 268 aa18.54■□□□□ 0.56
PRPF40B-209ENST00000548825 PBRM1Q86U86 1689 aa18.53■□□□□ 0.56
PRPF40B-209ENST00000548825 ANKRD50Q9ULJ7 1429 aa18.53■□□□□ 0.56
PRPF40B-209ENST00000548825 MYT1Q01538 1121 aa18.53■□□□□ 0.56
PRPF40B-209ENST00000548825 TROQ12816 1431 aaPredicted RBP18.53■□□□□ 0.56
PRPF40B-209ENST00000548825 CAMSAP2Q08AD1 1489 aa18.51■□□□□ 0.55
PRPF40B-209ENST00000548825 ARHGEF11O15085 1522 aa18.51■□□□□ 0.55
PRPF40B-209ENST00000548825 NBPF1Q3BBV0 1214 aa18.51■□□□□ 0.55
PRPF40B-209ENST00000548825 NCOA1Q15788 1441 aa18.5■□□□□ 0.55
PRPF40B-209ENST00000548825 TCOF1Q13428 1488 aaKnown RBP18.5■□□□□ 0.55
PRPF40B-209ENST00000548825 CCDC136Q96JN2 1154 aa18.49■□□□□ 0.55
PRPF40B-209ENST00000548825 KDM5BQ9UGL1 1544 aa18.48■□□□□ 0.55
PRPF40B-209ENST00000548825 RPRD2Q5VT52 1461 aaKnown RBP18.48■□□□□ 0.55
PRPF40B-209ENST00000548825 PPP4R2Q9NY27 417 aa18.48■□□□□ 0.55
PRPF40B-209ENST00000548825 KIF15Q9NS87 1388 aa18.47■□□□□ 0.55
PRPF40B-209ENST00000548825 GPATCH8Q9UKJ3 1502 aaKnown RBP18.47■□□□□ 0.55
PRPF40B-209ENST00000548825 ROCK2O75116 1388 aaKnown RBP18.46■□□□□ 0.55
PRPF40B-209ENST00000548825 PTPRGP23470 1445 aa18.46■□□□□ 0.55
PRPF40B-209ENST00000548825 AKNAQ7Z591 1439 aa18.46■□□□□ 0.55
PRPF40B-209ENST00000548825 KIAA0556O60303 1618 aa18.45■□□□□ 0.54
PRPF40B-209ENST00000548825 NPM2Q86SE8 214 aaKnown RBP18.44■□□□□ 0.54
PRPF40B-209ENST00000548825 ROCK1Q13464 1354 aa18.44■□□□□ 0.54
PRPF40B-209ENST00000548825 KIAA1107Q9UPP5 1409 aa18.42■□□□□ 0.54
PRPF40B-209ENST00000548825 RAPGEF6Q8TEU7 1601 aa18.42■□□□□ 0.54
PRPF40B-209ENST00000548825 C9orf84Q5VXU9 1444 aa18.42■□□□□ 0.54
PRPF40B-209ENST00000548825 EIF4G3O43432 1585 aaKnown RBP18.42■□□□□ 0.54
PRPF40B-209ENST00000548825 ZBED9Q6R2W3 1325 aa18.42■□□□□ 0.54
PRPF40B-209ENST00000548825 KIF14Q15058 1648 aa18.41■□□□□ 0.54
PRPF40B-209ENST00000548825 CHGAP10645 457 aaKnown RBP18.41■□□□□ 0.54
PRPF40B-209ENST00000548825 PZPP20742 1482 aa18.39■□□□□ 0.53
PRPF40B-209ENST00000548825 MSH5O43196 834 aa18.38■□□□□ 0.53
PRPF40B-209ENST00000548825 SYNJ2O15056 1496 aa18.38■□□□□ 0.53
PRPF40B-209ENST00000548825 NBR1Q14596 966 aa18.38■□□□□ 0.53
PRPF40B-209ENST00000548825 TEX14Q8IWB6 1497 aa18.37■□□□□ 0.53
PRPF40B-209ENST00000548825 ATP10BO94823 1461 aa18.36■□□□□ 0.53
PRPF40B-209ENST00000548825 PLIN1O60240 522 aa18.35■□□□□ 0.53
PRPF40B-209ENST00000548825 AFAP1Q8N556 730 aa18.34■□□□□ 0.53
PRPF40B-209ENST00000548825 CEP170Q5SW79 1584 aa18.34■□□□□ 0.53
PRPF40B-209ENST00000548825 NUDCQ9Y266 331 aa18.34■□□□□ 0.53
PRPF40B-209ENST00000548825 GCC2Q8IWJ2 1684 aa18.33■□□□□ 0.53
PRPF40B-209ENST00000548825 MAGI1Q96QZ7 1491 aaPredicted RBP18.33■□□□□ 0.53
PRPF40B-209ENST00000548825 CDCA7LQ96GN5 454 aa18.33■□□□□ 0.52
PRPF40B-209ENST00000548825 PANK3Q9H999 370 aa18.32■□□□□ 0.52
PRPF40B-209ENST00000548825 DNMT1P26358 1616 aaKnown RBP18.32■□□□□ 0.52
PRPF40B-209ENST00000548825 PNISRQ8TF01 805 aaKnown RBP18.32■□□□□ 0.52
PRPF40B-209ENST00000548825 CCDC144AA2RUR9 1427 aa18.31■□□□□ 0.52
PRPF40B-209ENST00000548825 SKAP1Q86WV1 359 aa18.29■□□□□ 0.52
PRPF40B-209ENST00000548825 SPATA31E1Q6ZUB1 1445 aa18.28■□□□□ 0.52
PRPF40B-209ENST00000548825 TNNT2P45379 298 aaPredicted RBP18.28■□□□□ 0.52
PRPF40B-209ENST00000548825 DHX29Q7Z478 1369 aaKnown RBP18.27■□□□□ 0.52
PRPF40B-209ENST00000548825 EXOC6Q8TAG9 804 aa18.26■□□□□ 0.51
PRPF40B-209ENST00000548825 NUTM2DQ5VT03 806 aaPredicted RBP18.24■□□□□ 0.51
PRPF40B-209ENST00000548825 MYBBP1AQ9BQG0 1328 aaKnown RBP18.24■□□□□ 0.51
PRPF40B-209ENST00000548825 ARHGAP5Q13017 1502 aa18.23■□□□□ 0.51
PRPF40B-209ENST00000548825 KIF3BO15066 747 aa18.23■□□□□ 0.51
PRPF40B-209ENST00000548825 KTN1Q86UP2 1357 aaKnown RBP18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms