RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 KIF13AQ9H1H9 1805 aa8.4□□□□□ -1.06
LIMA1-203ENST00000547825 RIOK3O14730 519 aaKnown RBP8.4□□□□□ -1.07
LIMA1-203ENST00000547825 DCAF8Q5TAQ9 597 aa8.4□□□□□ -1.07
LIMA1-203ENST00000547825 TDRD9Q8NDG6 1382 aaKnown RBP8.39□□□□□ -1.07
LIMA1-203ENST00000547825 CCER1Q8TC90 406 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-203ENST00000547825 SAMD9Q5K651 1589 aa8.37□□□□□ -1.07
LIMA1-203ENST00000547825 CENPBP07199 599 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-203ENST00000547825 IGF1RP08069 1367 aa8.37□□□□□ -1.07
LIMA1-203ENST00000547825 PRXQ9BXM0 1461 aa8.37□□□□□ -1.07
LIMA1-203ENST00000547825 KIF21BO75037 1637 aa8.37□□□□□ -1.07
LIMA1-203ENST00000547825 TRIM41Q8WV44 630 aa8.36□□□□□ -1.07
LIMA1-203ENST00000547825 UGGT2Q9NYU1 1516 aa8.36□□□□□ -1.07
LIMA1-203ENST00000547825 GSE1Q14687 1217 aa8.35□□□□□ -1.07
LIMA1-203ENST00000547825 BCL11BQ9C0K0 894 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-203ENST00000547825 ADCY10Q96PN6 1610 aa8.35□□□□□ -1.07
LIMA1-203ENST00000547825 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-203ENST00000547825 RASEFQ8IZ41 740 aa8.33□□□□□ -1.08
LIMA1-203ENST00000547825 ZFP91Q96JP5 570 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-203ENST00000547825 STK24Q9Y6E0 443 aa8.33□□□□□ -1.08
LIMA1-203ENST00000547825 MNX1P50219 401 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-203ENST00000547825 PPRC1Q5VV67 1664 aaKnown RBP8.32□□□□□ -1.08
LIMA1-203ENST00000547825 ZEB1P37275 1124 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-203ENST00000547825 DISP1Q96F81 1524 aa8.32□□□□□ -1.08
LIMA1-203ENST00000547825 IQGAP2Q13576 1575 aa8.32□□□□□ -1.08
LIMA1-203ENST00000547825 LRRIQ1Q96JM4 1722 aa8.32□□□□□ -1.08
LIMA1-203ENST00000547825 TRIM26Q12899 539 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-203ENST00000547825 KIAA0556O60303 1618 aa8.31□□□□□ -1.08
LIMA1-203ENST00000547825 KIAA0586Q9BVV6 1533 aa8.31□□□□□ -1.08
LIMA1-203ENST00000547825 PYGBP11216 843 aa8.31□□□□□ -1.08
LIMA1-203ENST00000547825 CADPS2Q86UW7 1296 aa8.31□□□□□ -1.08
LIMA1-203ENST00000547825 KIF27Q86VH2 1401 aa8.3□□□□□ -1.08
LIMA1-203ENST00000547825 CREBZFQ9NS37 354 aa8.29□□□□□ -1.08
LIMA1-203ENST00000547825 MAPKBP1O60336 1514 aa8.29□□□□□ -1.08
LIMA1-203ENST00000547825 VGFO15240 615 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-203ENST00000547825 CLEC11AQ9Y240 323 aa8.28□□□□□ -1.08
LIMA1-203ENST00000547825 KCNV2Q8TDN2 545 aa8.27□□□□□ -1.08
LIMA1-203ENST00000547825 UHRF1BP1LA0JNW5 1464 aa8.27□□□□□ -1.09
LIMA1-203ENST00000547825 ABCA8O94911 1581 aa8.27□□□□□ -1.09
LIMA1-203ENST00000547825 FAM212AQ96EL1 285 aa8.26□□□□□ -1.09
LIMA1-203ENST00000547825 TMEM132AQ24JP5 1023 aa8.25□□□□□ -1.09
LIMA1-203ENST00000547825 RAPGEF2Q9Y4G8 1499 aa8.25□□□□□ -1.09
LIMA1-203ENST00000547825 MAP3K4Q9Y6R4 1608 aa8.25□□□□□ -1.09
LIMA1-203ENST00000547825 KDM5BQ9UGL1 1544 aa8.24□□□□□ -1.09
LIMA1-203ENST00000547825 GLI2P10070 1586 aa8.24□□□□□ -1.09
LIMA1-203ENST00000547825 DIP2BQ9P265 1576 aa8.23□□□□□ -1.09
LIMA1-203ENST00000547825 ZCCHC11Q5TAX3 1644 aaKnown RBP8.23□□□□□ -1.09
LIMA1-203ENST00000547825 EEA1Q15075 1411 aa8.23□□□□□ -1.09
LIMA1-203ENST00000547825 POTEDQ86YR6 584 aa8.22□□□□□ -1.09
LIMA1-203ENST00000547825 RANGAP1P46060 587 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-203ENST00000547825 MYT1Q01538 1121 aa8.22□□□□□ -1.09
LIMA1-203ENST00000547825 LMOD2Q6P5Q4 547 aa8.22□□□□□ -1.09
LIMA1-203ENST00000547825 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.21□□□□□ -1.1
LIMA1-203ENST00000547825 ABCC2Q92887 1545 aa8.2□□□□□ -1.1
LIMA1-203ENST00000547825 CARMIL1Q5VZK9 1371 aa8.2□□□□□ -1.1
LIMA1-203ENST00000547825 PRR29P0C7W0 189 aa8.19□□□□□ -1.1
LIMA1-203ENST00000547825 CHRM1P11229 460 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-203ENST00000547825 BRPF1P55201 1214 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-203ENST00000547825 SPDYE1Q8NFV5 336 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-203ENST00000547825 EFCAB5A4FU69 1503 aa8.17□□□□□ -1.1
LIMA1-203ENST00000547825 PRG4Q92954 1404 aaPredicted RBP8.16□□□□□ -1.1
LIMA1-203ENST00000547825 C14orf37Q86TY3 774 aa8.16□□□□□ -1.1
LIMA1-203ENST00000547825 SGIP1Q9BQI5 828 aa8.16□□□□□ -1.1
LIMA1-203ENST00000547825 CFAP43Q8NDM7 1665 aa8.15□□□□□ -1.1
LIMA1-203ENST00000547825 RAPGEF6Q8TEU7 1601 aa8.15□□□□□ -1.11
LIMA1-203ENST00000547825 P3H3Q8IVL6 736 aa8.14□□□□□ -1.11
LIMA1-203ENST00000547825 ABCA9Q8IUA7 1624 aa8.13□□□□□ -1.11
LIMA1-203ENST00000547825 DIEXFQ68CQ4 756 aaKnown RBP8.13□□□□□ -1.11
LIMA1-203ENST00000547825 PCDHB8Q9UN66 801 aa8.13□□□□□ -1.11
LIMA1-203ENST00000547825 PCDHB13Q9Y5F0 798 aa8.13□□□□□ -1.11
LIMA1-203ENST00000547825 PPP1R37O75864 691 aa8.12□□□□□ -1.11
LIMA1-203ENST00000547825 NEUROD1Q13562 356 aa8.12□□□□□ -1.11
LIMA1-203ENST00000547825 ARXQ96QS3 562 aa8.11□□□□□ -1.11
LIMA1-203ENST00000547825 TSPYL2Q9H2G4 693 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-203ENST00000547825 ABCC10Q5T3U5 1492 aa8.11□□□□□ -1.11
LIMA1-203ENST00000547825 REM2Q8IYK8 340 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-203ENST00000547825 MFRPQ9BY79 579 aa8.11□□□□□ -1.11
LIMA1-203ENST00000547825 WDR70Q9NW82 654 aa8.11□□□□□ -1.11
LIMA1-203ENST00000547825 SEMA3EO15041 775 aa8.11□□□□□ -1.11
LIMA1-203ENST00000547825 CHMP7Q8WUX9 453 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-203ENST00000547825 CHADLQ6NUI6 762 aa8.1□□□□□ -1.11
LIMA1-203ENST00000547825 SLC24A3Q9HC58 644 aa8.09□□□□□ -1.11
LIMA1-203ENST00000547825 RYDENQ9NUL5 291 aaKnown RBP8.09□□□□□ -1.11
LIMA1-203ENST00000547825 GOLGA3Q08378 1498 aa8.09□□□□□ -1.11
LIMA1-203ENST00000547825 ZC3H15Q8WU90 426 aaKnown RBP8.09□□□□□ -1.11
LIMA1-203ENST00000547825 CACNB1Q02641 598 aaPredicted RBP8.09□□□□□ -1.12
LIMA1-203ENST00000547825 ERICH6Q7L0X2 663 aa8.08□□□□□ -1.12
LIMA1-203ENST00000547825 TNIKQ9UKE5 1360 aa8.08□□□□□ -1.12
LIMA1-203ENST00000547825 FRMPD1Q5SYB0 1578 aa8.07□□□□□ -1.12
LIMA1-203ENST00000547825 AKT1S1Q96B36 256 aa8.07□□□□□ -1.12
LIMA1-203ENST00000547825 JPH4Q96JJ6 628 aa8.07□□□□□ -1.12
LIMA1-203ENST00000547825 ACIN1Q9UKV3 1341 aaKnown RBP8.06□□□□□ -1.12
LIMA1-203ENST00000547825 ARHGAP35Q9NRY4 1499 aa8.06□□□□□ -1.12
LIMA1-203ENST00000547825 RICTORQ6R327 1708 aa8.06□□□□□ -1.12
LIMA1-203ENST00000547825 NUP153P49790 1475 aaKnown RBP8.06□□□□□ -1.12
LIMA1-203ENST00000547825 NEUROD2Q15784 382 aa8.06□□□□□ -1.12
LIMA1-203ENST00000547825 UBTFP17480 764 aaKnown RBP8.06□□□□□ -1.12
LIMA1-203ENST00000547825 UACAQ9BZF9 1416 aa8.05□□□□□ -1.12
LIMA1-203ENST00000547825 PITPNM1O00562 1244 aa8.05□□□□□ -1.12
LIMA1-203ENST00000547825 EPRSP07814 1512 aaKnown RBP8.05□□□□□ -1.12
LIMA1-203ENST00000547825 SIGLEC1Q9BZZ2 1709 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms