RNA–Protein interactions for RNA: ENST00000545920.1

SNHG1-225, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 625 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-225ENST00000545920 ZNF316A6NFI3 1004 aaPredicted RBP9.62□□□□□ -0.87
SNHG1-225ENST00000545920 FAM163AQ96GL9 167 aaPredicted RBP9.62□□□□□ -0.87
SNHG1-225ENST00000545920 CLIP1P30622 1438 aa9.61□□□□□ -0.87
SNHG1-225ENST00000545920 ERICH3Q5RHP9 1530 aa9.6□□□□□ -0.87
SNHG1-225ENST00000545920 TSHZ2Q9NRE2 1034 aa9.59□□□□□ -0.87
SNHG1-225ENST00000545920 TTLL13PA6NNM8 815 aa9.58□□□□□ -0.88
SNHG1-225ENST00000545920 SGIP1Q9BQI5 828 aa9.57□□□□□ -0.88
SNHG1-225ENST00000545920 DNAJC5Q9H3Z4 198 aa9.57□□□□□ -0.88
SNHG1-225ENST00000545920 CIZ1Q9ULV3 898 aaPredicted RBP9.57□□□□□ -0.88
SNHG1-225ENST00000545920 SYNJ1O43426 1573 aa9.56□□□□□ -0.88
SNHG1-225ENST00000545920 CHGAP10645 457 aaKnown RBP9.56□□□□□ -0.88
SNHG1-225ENST00000545920 TOP2BQ02880 1626 aa9.56□□□□□ -0.88
SNHG1-225ENST00000545920 SEC24BO95487 1268 aa9.55□□□□□ -0.88
SNHG1-225ENST00000545920 COLQQ9Y215 455 aaPredicted RBP9.55□□□□□ -0.88
SNHG1-225ENST00000545920 RUSC2Q8N2Y8 1516 aa9.55□□□□□ -0.88
SNHG1-225ENST00000545920 IER5LQ5T953 404 aa9.54□□□□□ -0.88
SNHG1-225ENST00000545920 HS6ST3Q8IZP7 471 aa9.54□□□□□ -0.88
SNHG1-225ENST00000545920 HMGXB3Q12766 1538 aa9.53□□□□□ -0.88
SNHG1-225ENST00000545920 PRXQ9BXM0 1461 aa9.53□□□□□ -0.88
SNHG1-225ENST00000545920 BIVM-ERCC5R4GMW8 1640 aa9.53□□□□□ -0.88
SNHG1-225ENST00000545920 NEUROD1Q13562 356 aa9.52□□□□□ -0.89
SNHG1-225ENST00000545920 PCDHB13Q9Y5F0 798 aa9.51□□□□□ -0.89
SNHG1-225ENST00000545920 TPRNQ4KMQ1 711 aa9.5□□□□□ -0.89
SNHG1-225ENST00000545920 TRIM35Q9UPQ4 493 aa9.5□□□□□ -0.89
SNHG1-225ENST00000545920 NCAPD3P42695 1498 aa9.5□□□□□ -0.89
SNHG1-225ENST00000545920 NUBP1P53384 320 aa9.49□□□□□ -0.89
SNHG1-225ENST00000545920 GSE1Q14687 1217 aa9.49□□□□□ -0.89
SNHG1-225ENST00000545920 CUX2O14529 1486 aa9.48□□□□□ -0.89
SNHG1-225ENST00000545920 RAPGEF2Q9Y4G8 1499 aa9.48□□□□□ -0.89
SNHG1-225ENST00000545920 RNF25Q96BH1 459 aaPredicted RBP9.47□□□□□ -0.89
SNHG1-225ENST00000545920 MAP3K1Q13233 1512 aa9.46□□□□□ -0.89
SNHG1-225ENST00000545920 GTF3C3Q9Y5Q9 886 aa9.46□□□□□ -0.9
SNHG1-225ENST00000545920 KIF27Q86VH2 1401 aa9.46□□□□□ -0.9
SNHG1-225ENST00000545920 RRBP1Q9P2E9 1410 aaKnown RBP9.46□□□□□ -0.9
SNHG1-225ENST00000545920 IFNL1Q8IU54 200 aa9.44□□□□□ -0.9
SNHG1-225ENST00000545920 CFTRP13569 1480 aa9.42□□□□□ -0.9
SNHG1-225ENST00000545920 CDAN1Q8IWY9 1227 aa9.42□□□□□ -0.9
SNHG1-225ENST00000545920 FAM212AQ96EL1 285 aa9.42□□□□□ -0.9
SNHG1-225ENST00000545920 TMEM106CQ9BVX2 250 aa9.42□□□□□ -0.9
SNHG1-225ENST00000545920 NKX1-1Q15270 411 aaPredicted RBP9.41□□□□□ -0.9
SNHG1-225ENST00000545920 SLAIN1Q8ND83 568 aa9.41□□□□□ -0.9
SNHG1-225ENST00000545920 ARAP1Q96P48 1450 aa9.4□□□□□ -0.9
SNHG1-225ENST00000545920 RIOK3O14730 519 aaKnown RBP9.4□□□□□ -0.9
SNHG1-225ENST00000545920 PLCG2P16885 1265 aa9.4□□□□□ -0.9
SNHG1-225ENST00000545920 DHX57Q6P158 1386 aaKnown RBP9.39□□□□□ -0.91
SNHG1-225ENST00000545920 CHRM1P11229 460 aaPredicted RBP9.39□□□□□ -0.91
SNHG1-225ENST00000545920 GTPBP6O43824 516 aaPredicted RBP9.37□□□□□ -0.91
SNHG1-225ENST00000545920 ST18O60284 1047 aa9.37□□□□□ -0.91
SNHG1-225ENST00000545920 IRX5P78411 483 aaPredicted RBP9.37□□□□□ -0.91
SNHG1-225ENST00000545920 TIMELESSQ9UNS1 1208 aa9.37□□□□□ -0.91
SNHG1-225ENST00000545920 CCNB3Q8WWL7 1395 aa9.36□□□□□ -0.91
SNHG1-225ENST00000545920 CUX1P39880 1505 aa9.36□□□□□ -0.91
SNHG1-225ENST00000545920 TTBK1Q5TCY1 1321 aaPredicted RBP9.34□□□□□ -0.91
SNHG1-225ENST00000545920 NBR1Q14596 966 aa9.34□□□□□ -0.91
SNHG1-225ENST00000545920 DCAF8Q5TAQ9 597 aa9.34□□□□□ -0.91
SNHG1-225ENST00000545920 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.34□□□□□ -0.917e-33■□□□□ 8.4
SNHG1-225ENST00000545920 FHAD1B1AJZ9 1412 aa9.33□□□□□ -0.92
SNHG1-225ENST00000545920 OCEL1Q9H607 264 aa9.33□□□□□ -0.92
SNHG1-225ENST00000545920 VGFO15240 615 aaPredicted RBP9.32□□□□□ -0.92
SNHG1-225ENST00000545920 ARHGAP35Q9NRY4 1499 aa9.32□□□□□ -0.92
SNHG1-225ENST00000545920 PRDM2Q13029 1718 aa9.31□□□□□ -0.92
SNHG1-225ENST00000545920 TMEM121BQ9BXQ6 578 aaPredicted RBP9.3□□□□□ -0.92
SNHG1-225ENST00000545920 IGF1RP08069 1367 aa9.28□□□□□ -0.92
SNHG1-225ENST00000545920 STK25O00506 426 aa9.28□□□□□ -0.92
SNHG1-225ENST00000545920 SNPHO15079 494 aa9.28□□□□□ -0.92
SNHG1-225ENST00000545920 AQRO60306 1485 aaKnown RBP eCLIP9.28□□□□□ -0.925e-27■■■■■ 53.2
SNHG1-225ENST00000545920 CADPSQ9ULU8 1353 aa9.27□□□□□ -0.93
SNHG1-225ENST00000545920 PYGBP11216 843 aa9.27□□□□□ -0.93
SNHG1-225ENST00000545920 TIAM1Q13009 1591 aa9.27□□□□□ -0.93
SNHG1-225ENST00000545920 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.26□□□□□ -0.93
SNHG1-225ENST00000545920 EFCAB5A4FU69 1503 aa9.26□□□□□ -0.93
SNHG1-225ENST00000545920 CARMIL1Q5VZK9 1371 aa9.25□□□□□ -0.93
SNHG1-225ENST00000545920 SETD5Q9C0A6 1442 aa9.25□□□□□ -0.93
SNHG1-225ENST00000545920 KANK4Q5T7N3 995 aaPredicted RBP9.25□□□□□ -0.93
SNHG1-225ENST00000545920 RYDENQ9NUL5 291 aaKnown RBP9.25□□□□□ -0.93
SNHG1-225ENST00000545920 LRRC9Q6ZRR7 1453 aa9.25□□□□□ -0.93
SNHG1-225ENST00000545920 PCDHB8Q9UN66 801 aa9.24□□□□□ -0.93
SNHG1-225ENST00000545920 FYCO1Q9BQS8 1478 aa9.22□□□□□ -0.93
SNHG1-225ENST00000545920 BCL11BQ9C0K0 894 aaPredicted RBP9.22□□□□□ -0.93
SNHG1-225ENST00000545920 RAB3GAP2Q9H2M9 1393 aa9.22□□□□□ -0.93
SNHG1-225ENST00000545920 CFAP43Q8NDM7 1665 aa9.21□□□□□ -0.93
SNHG1-225ENST00000545920 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.21□□□□□ -0.94
SNHG1-225ENST00000545920 MMRN1Q13201 1228 aa9.21□□□□□ -0.94
SNHG1-225ENST00000545920 SPNS2Q8IVW8 549 aa9.21□□□□□ -0.94
SNHG1-225ENST00000545920 ZFP91Q96JP5 570 aaPredicted RBP9.21□□□□□ -0.94
SNHG1-225ENST00000545920 YTHDC1Q96MU7 727 aaKnown RBP9.21□□□□□ -0.94
SNHG1-225ENST00000545920 FGD5Q6ZNL6 1462 aa9.21□□□□□ -0.94
SNHG1-225ENST00000545920 CASKIN1Q8WXD9 1431 aa9.2□□□□□ -0.94
SNHG1-225ENST00000545920 CC2D2AQ9P2K1 1620 aa9.2□□□□□ -0.94
SNHG1-225ENST00000545920 PDCD7Q8N8D1 485 aaKnown RBP9.19□□□□□ -0.94
SNHG1-225ENST00000545920 MAPKBP1O60336 1514 aa9.19□□□□□ -0.94
SNHG1-225ENST00000545920 ABCA10Q8WWZ4 1543 aa9.19□□□□□ -0.94
SNHG1-225ENST00000545920 CCER2I3L3R5 266 aa9.18□□□□□ -0.94
SNHG1-225ENST00000545920 CUL7Q14999 1698 aa9.18□□□□□ -0.94
SNHG1-225ENST00000545920 FMN1Q68DA7 1419 aa9.18□□□□□ -0.94
SNHG1-225ENST00000545920 STK24Q9Y6E0 443 aa9.18□□□□□ -0.94
SNHG1-225ENST00000545920 ZNF467Q7Z7K2 595 aaPredicted RBP9.17□□□□□ -0.94
SNHG1-225ENST00000545920 MARVELD3Q96A59 401 aa9.17□□□□□ -0.94
SNHG1-225ENST00000545920 L3MBTL3Q96JM7 780 aaPredicted RBP9.17□□□□□ -0.94
SNHG1-225ENST00000545920 DNMBPQ6XZF7 1577 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms