RNA–Protein interactions for RNA: ENST00000545920.1

SNHG1-225, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 625 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-225ENST00000545920 AEBP2Q6ZN18 517 aaPredicted RBP20.3■□□□□ 0.84
SNHG1-225ENST00000545920 CHIC1Q5VXU3 224 aa19.04■□□□□ 0.64
SNHG1-225ENST00000545920 SENP3Q9H4L4 574 aaPredicted RBP17.4■□□□□ 0.38
SNHG1-225ENST00000545920 PHF23Q9BUL5 403 aaPredicted RBP17.11■□□□□ 0.33
SNHG1-225ENST00000545920 FOXD1Q16676 465 aa16.23■□□□□ 0.19
SNHG1-225ENST00000545920 POTEDQ86YR6 584 aa15.39■□□□□ 0.05
SNHG1-225ENST00000545920 MSH5O43196 834 aa15.33■□□□□ 0.04
SNHG1-225ENST00000545920 PLPPR3Q6T4P5 718 aa15.1■□□□□ 0.01
SNHG1-225ENST00000545920 PIAS4Q8N2W9 510 aaPredicted RBP15.09■□□□□ 0.01
SNHG1-225ENST00000545920 PPP6R1Q9UPN7 881 aa14.94□□□□□ -0.02
SNHG1-225ENST00000545920 ADRA2BP18089 450 aa14.87□□□□□ -0.03
SNHG1-225ENST00000545920 DMRT2Q9Y5R5 561 aa13.76□□□□□ -0.21
SNHG1-225ENST00000545920 MAPK8IP2Q13387 824 aaPredicted RBP13.73□□□□□ -0.21
SNHG1-225ENST00000545920 SCAF1Q9H7N4 1312 aaKnown RBP13.67□□□□□ -0.22
SNHG1-225ENST00000545920 CACNB1Q02641 598 aaPredicted RBP13.28□□□□□ -0.28
SNHG1-225ENST00000545920 PPP4R3CPQ6ZMV5 832 aa13.18□□□□□ -0.3
SNHG1-225ENST00000545920 HOXD11P31277 338 aaPredicted RBP13.15□□□□□ -0.3
SNHG1-225ENST00000545920 DCAF8L1A6NGE4 600 aa13.14□□□□□ -0.31
SNHG1-225ENST00000545920 NISCHQ9Y2I1 1504 aa13.05□□□□□ -0.32
SNHG1-225ENST00000545920 RNF39Q9H2S5 420 aa13.04□□□□□ -0.32
SNHG1-225ENST00000545920 CNKSR2Q8WXI2 1034 aa13.02□□□□□ -0.33
SNHG1-225ENST00000545920 RNF216Q9NWF9 866 aaPredicted RBP12.98□□□□□ -0.33
SNHG1-225ENST00000545920 C1QBPQ07021 282 aaKnown RBP12.85□□□□□ -0.35
SNHG1-225ENST00000545920 DNAJC5BQ9UF47 199 aa12.81□□□□□ -0.36
SNHG1-225ENST00000545920 KCNA4P22459 653 aa12.71□□□□□ -0.37
SNHG1-225ENST00000545920 NCBP3Q53F19 620 aaKnown RBP12.62□□□□□ -0.39
SNHG1-225ENST00000545920 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.5□□□□□ -0.41
SNHG1-225ENST00000545920 EHMT2Q96KQ7 1210 aa12.46□□□□□ -0.41
SNHG1-225ENST00000545920 NPM3O75607 178 aaKnown RBP12.4□□□□□ -0.42
SNHG1-225ENST00000545920 U3KPZ7 1027 aaPredicted RBP12.21□□□□□ -0.45
SNHG1-225ENST00000545920 SLC4A1APQ9BWU0 796 aaKnown RBP12.2□□□□□ -0.46
SNHG1-225ENST00000545920 CSRNP3Q8WYN3 585 aa12.16□□□□□ -0.46
SNHG1-225ENST00000545920 DSG3P32926 999 aa12.11□□□□□ -0.47
SNHG1-225ENST00000545920 CAPN15O75808 1086 aa12.09□□□□□ -0.47
SNHG1-225ENST00000545920 SPINK5Q9NQ38 1064 aaPredicted RBP12.09□□□□□ -0.47
SNHG1-225ENST00000545920 POTEHQ6S545 545 aa12.01□□□□□ -0.49
SNHG1-225ENST00000545920 SLC4A2P04920 1241 aa11.92□□□□□ -0.5
SNHG1-225ENST00000545920 APLP2Q06481 763 aa11.9□□□□□ -0.5
SNHG1-225ENST00000545920 ZNF219Q9P2Y4 722 aaPredicted RBP11.84□□□□□ -0.51
SNHG1-225ENST00000545920 TRHP20396 242 aaPredicted RBP11.82□□□□□ -0.52
SNHG1-225ENST00000545920 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.81□□□□□ -0.52
SNHG1-225ENST00000545920 HNRNPUL2Q1KMD3 747 aaKnown RBP11.81□□□□□ -0.52
SNHG1-225ENST00000545920 ABCB7O75027 752 aa11.77□□□□□ -0.53
SNHG1-225ENST00000545920 ZBTB22O15209 634 aa11.74□□□□□ -0.53
SNHG1-225ENST00000545920 SAMD1Q6SPF0 538 aaPredicted RBP11.72□□□□□ -0.53
SNHG1-225ENST00000545920 RBM42Q9BTD8 480 aaKnown RBP11.59□□□□□ -0.55
SNHG1-225ENST00000545920 FOXD4L1Q9NU39 408 aa11.53□□□□□ -0.56
SNHG1-225ENST00000545920 MYCNP04198 464 aaPredicted RBP11.5□□□□□ -0.57
SNHG1-225ENST00000545920 POLA2Q14181 598 aa11.46□□□□□ -0.57
SNHG1-225ENST00000545920 CHRDL2Q6WN34 429 aa11.42□□□□□ -0.58
SNHG1-225ENST00000545920 AKT1S1Q96B36 256 aa11.26□□□□□ -0.61
SNHG1-225ENST00000545920 ZBTB12Q9Y330 459 aaPredicted RBP11.26□□□□□ -0.61
SNHG1-225ENST00000545920 ATF5Q9Y2D1 282 aaPredicted RBP11.22□□□□□ -0.61
SNHG1-225ENST00000545920 CCDC180Q9P1Z9 1646 aa11.16□□□□□ -0.62
SNHG1-225ENST00000545920 ATXN8OSP0DMR3 200 aa11.14□□□□□ -0.63
SNHG1-225ENST00000545920 REM2Q8IYK8 340 aaPredicted RBP11.13□□□□□ -0.63
SNHG1-225ENST00000545920 SP7Q8TDD2 431 aaPredicted RBP11.13□□□□□ -0.63
SNHG1-225ENST00000545920 ZCCHC6Q5VYS8 1495 aaKnown RBP11.09□□□□□ -0.63
SNHG1-225ENST00000545920 OSCARQ8IYS5 282 aa11.09□□□□□ -0.63
SNHG1-225ENST00000545920 PIP4P2Q8N4L2 257 aa11.09□□□□□ -0.63
SNHG1-225ENST00000545920 PITPNM1O00562 1244 aa11.01□□□□□ -0.65
SNHG1-225ENST00000545920 AMER1Q5JTC6 1135 aaPredicted RBP11.01□□□□□ -0.65
SNHG1-225ENST00000545920 FXR2P51116 673 aaKnown RBP eCLIP10.99□□□□□ -0.65
SNHG1-225ENST00000545920 RTN4Q9NQC3 1192 aaKnown RBP10.99□□□□□ -0.65
SNHG1-225ENST00000545920 HAX1O00165 279 aa10.94□□□□□ -0.66
SNHG1-225ENST00000545920 DCAF1Q9Y4B6 1507 aa10.92□□□□□ -0.66
SNHG1-225ENST00000545920 SLC24A1O60721 1099 aa10.89□□□□□ -0.67
SNHG1-225ENST00000545920 FKBP8Q14318 412 aa10.88□□□□□ -0.67
SNHG1-225ENST00000545920 SPDYE2BA6NHP3 402 aa10.87□□□□□ -0.67
SNHG1-225ENST00000545920 SPDYE6P0CI01 402 aa10.87□□□□□ -0.67
SNHG1-225ENST00000545920 SPDYE2Q495Y8 402 aa10.87□□□□□ -0.67
SNHG1-225ENST00000545920 FBLN2P98095 1184 aa10.84□□□□□ -0.67
SNHG1-225ENST00000545920 SHROOM4Q9ULL8 1493 aa10.83□□□□□ -0.68
SNHG1-225ENST00000545920 EVX2Q03828 476 aa10.77□□□□□ -0.69
SNHG1-225ENST00000545920 SUPT5HO00267 1087 aaKnown RBP10.75□□□□□ -0.69
SNHG1-225ENST00000545920 SPDYE1Q8NFV5 336 aaPredicted RBP10.74□□□□□ -0.69
SNHG1-225ENST00000545920 PRKAR2AP13861 404 aaKnown RBP10.72□□□□□ -0.69
SNHG1-225ENST00000545920 MKRN4PQ13434 485 aaPredicted RBP10.7□□□□□ -0.7
SNHG1-225ENST00000545920 CLEC11AQ9Y240 323 aa10.69□□□□□ -0.7
SNHG1-225ENST00000545920 SSUH2Q9Y2M2 353 aa10.69□□□□□ -0.7
SNHG1-225ENST00000545920 ZNF692Q9BU19 519 aaPredicted RBP10.67□□□□□ -0.7
SNHG1-225ENST00000545920 C19orf67A6NJJ6 358 aa10.65□□□□□ -0.7
SNHG1-225ENST00000545920 MYO15BQ96JP2 1530 aa10.62□□□□□ -0.71
SNHG1-225ENST00000545920 HRCP23327 699 aa10.57□□□□□ -0.72
SNHG1-225ENST00000545920 GABBR2O75899 941 aa10.54□□□□□ -0.72
SNHG1-225ENST00000545920 CHADLQ6NUI6 762 aa10.51□□□□□ -0.73
SNHG1-225ENST00000545920 PRR29P0C7W0 189 aa10.5□□□□□ -0.73
SNHG1-225ENST00000545920 PABPN1Q86U42 306 aaKnown RBP eCLIP10.49□□□□□ -0.73
SNHG1-225ENST00000545920 ABCC9O60706 1549 aa10.47□□□□□ -0.73
SNHG1-225ENST00000545920 DCAF8L2P0C7V8 631 aa10.43□□□□□ -0.74
SNHG1-225ENST00000545920 LHX8Q68G74 356 aa10.43□□□□□ -0.74
SNHG1-225ENST00000545920 PROM2Q8N271 834 aa10.37□□□□□ -0.75
SNHG1-225ENST00000545920 FBXO3Q9UK99 471 aa10.37□□□□□ -0.75
SNHG1-225ENST00000545920 FARP1Q9Y4F1 1045 aaPredicted RBP10.37□□□□□ -0.75
SNHG1-225ENST00000545920 CD44P16070 742 aaKnown RBP10.36□□□□□ -0.75
SNHG1-225ENST00000545920 CLCN6P51797 869 aa10.35□□□□□ -0.75
SNHG1-225ENST00000545920 SPDYE4A6NLX3 237 aa10.33□□□□□ -0.76
SNHG1-225ENST00000545920 RSF1Q96T23 1441 aaPredicted RBP10.33□□□□□ -0.76
SNHG1-225ENST00000545920 ZEB1P37275 1124 aaPredicted RBP10.32□□□□□ -0.76
SNHG1-225ENST00000545920 TRIM26Q12899 539 aaPredicted RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms