RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 FGD5Q6ZNL6 1462 aa17.14■□□□□ 0.33
SFSWAP-209ENST00000540469 NCOA1Q15788 1441 aa17.14■□□□□ 0.33
SFSWAP-209ENST00000540469 RAD54L2Q9Y4B4 1467 aa17.13■□□□□ 0.33
SFSWAP-209ENST00000540469 UBE2Q2Q8WVN8 375 aa17.12■□□□□ 0.33
SFSWAP-209ENST00000540469 PDE4AP27815 886 aa17.12■□□□□ 0.33
SFSWAP-209ENST00000540469 TDRD9Q8NDG6 1382 aaKnown RBP17.12■□□□□ 0.33
SFSWAP-209ENST00000540469 TCERG1O14776 1098 aaKnown RBP17.12■□□□□ 0.33
SFSWAP-209ENST00000540469 USP35Q9P2H5 1018 aa17.12■□□□□ 0.33
SFSWAP-209ENST00000540469 MYOM3Q5VTT5 1437 aa17.11■□□□□ 0.33
SFSWAP-209ENST00000540469 NBPF8Q3BBV2 869 aa17.11■□□□□ 0.33
SFSWAP-209ENST00000540469 ARID3CA6NKF2 412 aa17.11■□□□□ 0.33
SFSWAP-209ENST00000540469 EXOC6Q8TAG9 804 aa17.1■□□□□ 0.33
SFSWAP-209ENST00000540469 FBLN2P98095 1184 aa17.1■□□□□ 0.33
SFSWAP-209ENST00000540469 PDS5BQ9NTI5 1447 aa17.1■□□□□ 0.33
SFSWAP-209ENST00000540469 KDM5BQ9UGL1 1544 aa17.1■□□□□ 0.33
SFSWAP-209ENST00000540469 SLC4A1APQ9BWU0 796 aaKnown RBP17.08■□□□□ 0.32
SFSWAP-209ENST00000540469 BRPF3Q9ULD4 1205 aa17.06■□□□□ 0.32
SFSWAP-209ENST00000540469 RRP1P56182 461 aaKnown RBP17.05■□□□□ 0.32
SFSWAP-209ENST00000540469 EFCAB5A4FU69 1503 aa17.04■□□□□ 0.32
SFSWAP-209ENST00000540469 RNF123Q5XPI4 1314 aa17.03■□□□□ 0.32
SFSWAP-209ENST00000540469 DDRGK1Q96HY6 314 aa17.03■□□□□ 0.32
SFSWAP-209ENST00000540469 RCAN3Q9UKA8 241 aa17.03■□□□□ 0.32
SFSWAP-209ENST00000540469 BACH2Q9BYV9 841 aa17.01■□□□□ 0.31
SFSWAP-209ENST00000540469 GSE1Q14687 1217 aa17.01■□□□□ 0.31
SFSWAP-209ENST00000540469 PNISRQ8TF01 805 aaKnown RBP17■□□□□ 0.31
SFSWAP-209ENST00000540469 SLC4A3P48751 1232 aa16.99■□□□□ 0.31
SFSWAP-209ENST00000540469 URB2Q14146 1524 aaKnown RBP16.99■□□□□ 0.31
SFSWAP-209ENST00000540469 MS4A1P11836 297 aa16.97■□□□□ 0.31
SFSWAP-209ENST00000540469 TOPBP1Q92547 1522 aa16.97■□□□□ 0.31
SFSWAP-209ENST00000540469 USP47Q96K76 1375 aa16.95■□□□□ 0.3
SFSWAP-209ENST00000540469 SUPT6HQ7KZ85 1726 aaKnown RBP16.95■□□□□ 0.3
SFSWAP-209ENST00000540469 SKAP1Q86WV1 359 aa16.95■□□□□ 0.3
SFSWAP-209ENST00000540469 NFKBIBQ15653 356 aa16.95■□□□□ 0.3
SFSWAP-209ENST00000540469 WASHC2CQ9Y4E1 1318 aa16.94■□□□□ 0.3
SFSWAP-209ENST00000540469 PLIN1O60240 522 aa16.94■□□□□ 0.3
SFSWAP-209ENST00000540469 POLA1P09884 1462 aaPredicted RBP16.94■□□□□ 0.3
SFSWAP-209ENST00000540469 LAMC3Q9Y6N6 1575 aa16.94■□□□□ 0.3
SFSWAP-209ENST00000540469 KIF21AQ7Z4S6 1674 aa16.93■□□□□ 0.3
SFSWAP-209ENST00000540469 SNAPC4Q5SXM2 1469 aa16.93■□□□□ 0.3
SFSWAP-209ENST00000540469 DHX29Q7Z478 1369 aaKnown RBP16.92■□□□□ 0.3
SFSWAP-209ENST00000540469 FRAT1Q92837 279 aaPredicted RBP16.92■□□□□ 0.3
SFSWAP-209ENST00000540469 HECW1Q76N89 1606 aa16.92■□□□□ 0.3
SFSWAP-209ENST00000540469 DENND4BO75064 1496 aaPredicted RBP16.91■□□□□ 0.3
SFSWAP-209ENST00000540469 ANKRD30BQ9BXX2 1392 aa16.91■□□□□ 0.3
SFSWAP-209ENST00000540469 EHBP1L1Q8N3D4 1523 aa16.91■□□□□ 0.3
SFSWAP-209ENST00000540469 RPRD2Q5VT52 1461 aaKnown RBP16.91■□□□□ 0.3
SFSWAP-209ENST00000540469 CARD11Q9BXL7 1154 aa16.9■□□□□ 0.3
SFSWAP-209ENST00000540469 PKNOX2Q96KN3 472 aa16.89■□□□□ 0.29
SFSWAP-209ENST00000540469 KDM2AQ9Y2K7 1162 aa16.89■□□□□ 0.29
SFSWAP-209ENST00000540469 KDM6BO15054 1643 aa16.89■□□□□ 0.29
SFSWAP-209ENST00000540469 SPATA31E1Q6ZUB1 1445 aa16.88■□□□□ 0.29
SFSWAP-209ENST00000540469 MYBBP1AQ9BQG0 1328 aaKnown RBP16.88■□□□□ 0.29
SFSWAP-209ENST00000540469 KIF15Q9NS87 1388 aa16.87■□□□□ 0.29
SFSWAP-209ENST00000540469 CDCA7LQ96GN5 454 aa16.87■□□□□ 0.29
SFSWAP-209ENST00000540469 CRBNQ96SW2 442 aa16.87■□□□□ 0.29
SFSWAP-209ENST00000540469 MIA2Q96PC5 1412 aa16.86■□□□□ 0.29
SFSWAP-209ENST00000540469 RALBP1Q15311 655 aa16.84■□□□□ 0.29
SFSWAP-209ENST00000540469 ROCK2O75116 1388 aaKnown RBP16.84■□□□□ 0.29
SFSWAP-209ENST00000540469 TEX14Q8IWB6 1497 aa16.84■□□□□ 0.29
SFSWAP-209ENST00000540469 UGGT2Q9NYU1 1516 aa16.84■□□□□ 0.29
SFSWAP-209ENST00000540469 PDE3BQ13370 1112 aa16.83■□□□□ 0.29
SFSWAP-209ENST00000540469 GCC2Q8IWJ2 1684 aa16.83■□□□□ 0.28
SFSWAP-209ENST00000540469 GRIN2BQ13224 1484 aa16.82■□□□□ 0.28
SFSWAP-209ENST00000540469 BRD4O60885 1362 aaPredicted RBP16.82■□□□□ 0.28
SFSWAP-209ENST00000540469 ZNF608Q9ULD9 1512 aaPredicted RBP16.82■□□□□ 0.28
SFSWAP-209ENST00000540469 CTTNBP2Q8WZ74 1663 aa16.82■□□□□ 0.28
SFSWAP-209ENST00000540469 RGS3P49796 1198 aa16.82■□□□□ 0.28
SFSWAP-209ENST00000540469 ZNF777Q9ULD5 760 aaPredicted RBP16.82■□□□□ 0.28
SFSWAP-209ENST00000540469 MRC2Q9UBG0 1479 aa16.81■□□□□ 0.28
SFSWAP-209ENST00000540469 ST20-MTHFSA0A0A6YYL1 179 aa16.81■□□□□ 0.28
SFSWAP-209ENST00000540469 PKD2Q13563 968 aa16.81■□□□□ 0.28
SFSWAP-209ENST00000540469 DNMBPQ6XZF7 1577 aa16.81■□□□□ 0.28
SFSWAP-209ENST00000540469 NLRP13Q86W25 1043 aa16.8■□□□□ 0.28
SFSWAP-209ENST00000540469 FRAT2O75474 233 aaPredicted RBP16.8■□□□□ 0.28
SFSWAP-209ENST00000540469 ARID4BQ4LE39 1312 aaPredicted RBP16.8■□□□□ 0.28
SFSWAP-209ENST00000540469 ZNF644Q9H582 1327 aaPredicted RBP16.8■□□□□ 0.28
SFSWAP-209ENST00000540469 ABCA5Q8WWZ7 1642 aa16.78■□□□□ 0.28
SFSWAP-209ENST00000540469 ABCA10Q8WWZ4 1543 aa16.78■□□□□ 0.28
SFSWAP-209ENST00000540469 ARXQ96QS3 562 aa16.78■□□□□ 0.28
SFSWAP-209ENST00000540469 TCOF1Q13428 1488 aaKnown RBP16.78■□□□□ 0.28
SFSWAP-209ENST00000540469 CC2D1BQ5T0F9 858 aaKnown RBP16.77■□□□□ 0.28
SFSWAP-209ENST00000540469 CUL7Q14999 1698 aa16.77■□□□□ 0.27
SFSWAP-209ENST00000540469 KTN1Q86UP2 1357 aaKnown RBP16.77■□□□□ 0.27
SFSWAP-209ENST00000540469 CHMP7Q8WUX9 453 aaPredicted RBP16.76■□□□□ 0.27
SFSWAP-209ENST00000540469 RSPH6AQ9H0K4 717 aa16.76■□□□□ 0.27
SFSWAP-209ENST00000540469 LRPPRCP42704 1394 aaKnown RBP16.76■□□□□ 0.27
SFSWAP-209ENST00000540469 MAGI3Q5TCQ9 1506 aa16.76■□□□□ 0.27
SFSWAP-209ENST00000540469 PRDM2Q13029 1718 aa16.76■□□□□ 0.27
SFSWAP-209ENST00000540469 FAM161AQ3B820 660 aa16.75■□□□□ 0.27
SFSWAP-209ENST00000540469 DAPK1P53355 1430 aa16.74■□□□□ 0.27
SFSWAP-209ENST00000540469 LRRIQ1Q96JM4 1722 aa16.73■□□□□ 0.27
SFSWAP-209ENST00000540469 DCAF11Q8TEB1 546 aa16.73■□□□□ 0.27
SFSWAP-209ENST00000540469 POLR1AO95602 1720 aaPredicted RBP16.73■□□□□ 0.27
SFSWAP-209ENST00000540469 C20orf194Q5TEA3 1177 aa16.73■□□□□ 0.27
SFSWAP-209ENST00000540469 THOC2Q8NI27 1593 aaKnown RBP16.73■□□□□ 0.27
SFSWAP-209ENST00000540469 GAPVD1Q14C86 1478 aa16.72■□□□□ 0.27
SFSWAP-209ENST00000540469 CENPQQ7L2Z9 268 aaPredicted RBP16.72■□□□□ 0.27
SFSWAP-209ENST00000540469 VSIG10Q8N0Z9 540 aa16.72■□□□□ 0.27
SFSWAP-209ENST00000540469 BCORL1Q5H9F3 1711 aa16.72■□□□□ 0.27
SFSWAP-209ENST00000540469 CDK13Q14004 1512 aaKnown RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms