RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 NISCHQ9Y2I1 1504 aa24.02■■□□□ 1.44
SFSWAP-209ENST00000540469 SHROOM4Q9ULL8 1493 aa21.63■■□□□ 1.05
SFSWAP-209ENST00000540469 SUPT5HO00267 1087 aaKnown RBP21.59■■□□□ 1.05
SFSWAP-209ENST00000540469 HRCP23327 699 aa21.5■■□□□ 1.03
SFSWAP-209ENST00000540469 PCGF6Q9BYE7 350 aa21.29■■□□□ 1
SFSWAP-209ENST00000540469 PPARGC1BQ86YN6 1023 aaKnown RBP21.15■□□□□ 0.98
SFSWAP-209ENST00000540469 CHIC1Q5VXU3 224 aa20.96■□□□□ 0.95
SFSWAP-209ENST00000540469 MYO15BQ96JP2 1530 aa20.92■□□□□ 0.94
SFSWAP-209ENST00000540469 DCAF8L2P0C7V8 631 aa20.75■□□□□ 0.91
SFSWAP-209ENST00000540469 PELP1Q8IZL8 1130 aaKnown RBP20.71■□□□□ 0.91
SFSWAP-209ENST00000540469 LOC105371045A0A1W2PR82 267 aa20.58■□□□□ 0.89
SFSWAP-209ENST00000540469 TRIM26Q12899 539 aaPredicted RBP20.51■□□□□ 0.87
SFSWAP-209ENST00000540469 DCAF1Q9Y4B6 1507 aa20.47■□□□□ 0.87
SFSWAP-209ENST00000540469 ZCCHC6Q5VYS8 1495 aaKnown RBP20.38■□□□□ 0.85
SFSWAP-209ENST00000540469 ZEB1P37275 1124 aaPredicted RBP20.36■□□□□ 0.85
SFSWAP-209ENST00000540469 SCAF1Q9H7N4 1312 aaKnown RBP20.3■□□□□ 0.84
SFSWAP-209ENST00000540469 CCDC180Q9P1Z9 1646 aa20.18■□□□□ 0.82
SFSWAP-209ENST00000540469 ABCC9O60706 1549 aa20.08■□□□□ 0.81
SFSWAP-209ENST00000540469 EHMT2Q96KQ7 1210 aa20.06■□□□□ 0.8
SFSWAP-209ENST00000540469 FAM9AQ8IZU1 332 aaPredicted RBP20.03■□□□□ 0.8
SFSWAP-209ENST00000540469 TRIM41Q8WV44 630 aa19.92■□□□□ 0.78
SFSWAP-209ENST00000540469 MYT1Q01538 1121 aa19.89■□□□□ 0.77
SFSWAP-209ENST00000540469 ACIN1Q9UKV3 1341 aaKnown RBP19.87■□□□□ 0.77
SFSWAP-209ENST00000540469 CENPBP07199 599 aaPredicted RBP19.82■□□□□ 0.76
SFSWAP-209ENST00000540469 NEUROD1Q13562 356 aa19.82■□□□□ 0.76
SFSWAP-209ENST00000540469 CCER1Q8TC90 406 aaPredicted RBP19.8■□□□□ 0.76
SFSWAP-209ENST00000540469 GTF3C3Q9Y5Q9 886 aa19.79■□□□□ 0.76
SFSWAP-209ENST00000540469 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.75■□□□□ 0.75
SFSWAP-209ENST00000540469 DIEXFQ68CQ4 756 aaKnown RBP19.67■□□□□ 0.74
SFSWAP-209ENST00000540469 TTBK1Q5TCY1 1321 aaPredicted RBP19.56■□□□□ 0.72
SFSWAP-209ENST00000540469 YTHDC1Q96MU7 727 aaKnown RBP19.52■□□□□ 0.72
SFSWAP-209ENST00000540469 RSF1Q96T23 1441 aaPredicted RBP19.37■□□□□ 0.69
SFSWAP-209ENST00000540469 RB1CC1Q8TDY2 1594 aa19.28■□□□□ 0.68
SFSWAP-209ENST00000540469 ZNF316A6NFI3 1004 aaPredicted RBP19.26■□□□□ 0.67
SFSWAP-209ENST00000540469 PABPN1Q86U42 306 aaKnown RBP eCLIP19.26■□□□□ 0.67
SFSWAP-209ENST00000540469 SCRIBQ14160 1630 aa19.21■□□□□ 0.67
SFSWAP-209ENST00000540469 MIER1Q8N108 512 aa19.12■□□□□ 0.65
SFSWAP-209ENST00000540469 HNRNPUL2Q1KMD3 747 aaKnown RBP19.01■□□□□ 0.63
SFSWAP-209ENST00000540469 UBTFP17480 764 aaKnown RBP19■□□□□ 0.63
SFSWAP-209ENST00000540469 BCL11AQ9H165 835 aa19■□□□□ 0.63
SFSWAP-209ENST00000540469 NACADO15069 1562 aa18.93■□□□□ 0.62
SFSWAP-209ENST00000540469 CEP162Q5TB80 1403 aa18.91■□□□□ 0.62
SFSWAP-209ENST00000540469 CECR2Q9BXF3 1484 aa18.87■□□□□ 0.61
SFSWAP-209ENST00000540469 WRNQ14191 1432 aaPredicted RBP eCLIP18.84■□□□□ 0.61
SFSWAP-209ENST00000540469 MROH2BQ7Z745 1585 aa18.8■□□□□ 0.6
SFSWAP-209ENST00000540469 APLP2Q06481 763 aa18.79■□□□□ 0.6
SFSWAP-209ENST00000540469 SUPT16HQ9Y5B9 1047 aaKnown RBP18.77■□□□□ 0.6
SFSWAP-209ENST00000540469 CSRNP3Q8WYN3 585 aa18.74■□□□□ 0.59
SFSWAP-209ENST00000540469 TNIKQ9UKE5 1360 aa18.74■□□□□ 0.59
SFSWAP-209ENST00000540469 WIZO95785 1651 aa18.73■□□□□ 0.59
SFSWAP-209ENST00000540469 CLSPNQ9HAW4 1339 aa18.71■□□□□ 0.59
SFSWAP-209ENST00000540469 RANGAP1P46060 587 aaPredicted RBP18.71■□□□□ 0.59
SFSWAP-209ENST00000540469 CCDC88BA6NC98 1476 aa18.7■□□□□ 0.58
SFSWAP-209ENST00000540469 ANP32EQ9BTT0 268 aa18.7■□□□□ 0.58
SFSWAP-209ENST00000540469 ABCC8Q09428 1581 aa18.69■□□□□ 0.58
SFSWAP-209ENST00000540469 SOGA1O94964 1423 aa18.68■□□□□ 0.58
SFSWAP-209ENST00000540469 TSHZ2Q9NRE2 1034 aa18.64■□□□□ 0.57
SFSWAP-209ENST00000540469 BCANQ96GW7 911 aa18.63■□□□□ 0.57
SFSWAP-209ENST00000540469 GOLGA3Q08378 1498 aa18.54■□□□□ 0.56
SFSWAP-209ENST00000540469 BAZ1AQ9NRL2 1556 aaPredicted RBP18.53■□□□□ 0.56
SFSWAP-209ENST00000540469 RUSC2Q8N2Y8 1516 aa18.53■□□□□ 0.56
SFSWAP-209ENST00000540469 EEA1Q15075 1411 aa18.52■□□□□ 0.56
SFSWAP-209ENST00000540469 PRKCSHP14314 528 aaPredicted RBP18.47■□□□□ 0.55
SFSWAP-209ENST00000540469 CLIP1P30622 1438 aa18.46■□□□□ 0.55
SFSWAP-209ENST00000540469 EIF4G1Q04637 1599 aaKnown RBP18.45■□□□□ 0.54
SFSWAP-209ENST00000540469 NEFLP07196 543 aa18.44■□□□□ 0.54
SFSWAP-209ENST00000540469 FKBP8Q14318 412 aa18.44■□□□□ 0.54
SFSWAP-209ENST00000540469 UNC13AQ9UPW8 1703 aa18.44■□□□□ 0.54
SFSWAP-209ENST00000540469 BICRAQ9NZM4 1560 aa18.38■□□□□ 0.53
SFSWAP-209ENST00000540469 ITGAEP38570 1179 aa18.37■□□□□ 0.53
SFSWAP-209ENST00000540469 KCNH8Q96L42 1107 aa18.36■□□□□ 0.53
SFSWAP-209ENST00000540469 VPS8Q8N3P4 1428 aa18.36■□□□□ 0.53
SFSWAP-209ENST00000540469 CEP164Q9UPV0 1460 aa18.34■□□□□ 0.53
SFSWAP-209ENST00000540469 TOP2AP11388 1531 aaKnown RBP18.34■□□□□ 0.53
SFSWAP-209ENST00000540469 DHX57Q6P158 1386 aaKnown RBP18.33■□□□□ 0.53
SFSWAP-209ENST00000540469 ERICH6Q7L0X2 663 aa18.28■□□□□ 0.52
SFSWAP-209ENST00000540469 SMARCA2P51531 1590 aa18.27■□□□□ 0.52
SFSWAP-209ENST00000540469 RBM19Q9Y4C8 960 aaKnown RBP18.27■□□□□ 0.52
SFSWAP-209ENST00000540469 DDX10Q13206 875 aaKnown RBP18.25■□□□□ 0.51
SFSWAP-209ENST00000540469 TRIM52Q96A61 297 aa18.21■□□□□ 0.51
SFSWAP-209ENST00000540469 RAPGEF2Q9Y4G8 1499 aa18.15■□□□□ 0.5
SFSWAP-209ENST00000540469 KANK4Q5T7N3 995 aaPredicted RBP18.15■□□□□ 0.5
SFSWAP-209ENST00000540469 SMARCA4P51532 1647 aa18.14■□□□□ 0.49
SFSWAP-209ENST00000540469 KIF21BO75037 1637 aa18.12■□□□□ 0.49
SFSWAP-209ENST00000540469 ANP32CO43423 234 aa18.09■□□□□ 0.49
SFSWAP-209ENST00000540469 HIRIP3Q9BW71 556 aaPredicted RBP18.09■□□□□ 0.49
SFSWAP-209ENST00000540469 DNAJC5BQ9UF47 199 aa18.08■□□□□ 0.48
SFSWAP-209ENST00000540469 BAZ1BQ9UIG0 1483 aaKnown RBP18.08■□□□□ 0.48
SFSWAP-209ENST00000540469 CDK11AQ9UQ88 783 aaPredicted RBP18.05■□□□□ 0.48
SFSWAP-209ENST00000540469 SYNJ1O43426 1573 aa18.03■□□□□ 0.48
SFSWAP-209ENST00000540469 CCNB3Q8WWL7 1395 aa18.02■□□□□ 0.47
SFSWAP-209ENST00000540469 IRX6P78412 446 aaPredicted RBP18.02■□□□□ 0.47
SFSWAP-209ENST00000540469 SIN3AQ96ST3 1273 aa18■□□□□ 0.47
SFSWAP-209ENST00000540469 MSH5O43196 834 aa17.99■□□□□ 0.47
SFSWAP-209ENST00000540469 RAB3GAP2Q9H2M9 1393 aa17.97■□□□□ 0.47
SFSWAP-209ENST00000540469 FAM50AQ14320 339 aaKnown RBP17.96■□□□□ 0.47
SFSWAP-209ENST00000540469 ANO8Q9HCE9 1232 aaPredicted RBP17.94■□□□□ 0.46
SFSWAP-209ENST00000540469 HNRNPUQ00839 825 aaKnown RBP eCLIP17.93■□□□□ 0.46
SFSWAP-209ENST00000540469 ATAD2BQ9ULI0 1458 aa17.93■□□□□ 0.46
SFSWAP-209ENST00000540469 RRBP1Q9P2E9 1410 aaKnown RBP17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms